Wall clock time and date at job start Tue Mar 31 2020 06:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48498 * 109.47435 * 240.00036 * 3 2 1 5 5 H 1.48502 * 109.47455 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47119 * 120.00469 * 3 2 1 7 7 C 1.37880 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99979 * 175.27868 * 7 2 1 9 9 C 1.50697 * 119.99729 * 355.55829 * 7 2 1 10 10 C 1.52998 * 115.54853 * 274.98797 * 9 7 2 11 11 N 1.46493 * 109.47606 * 294.33524 * 10 9 7 12 12 S 1.65595 * 120.00439 * 159.13435 * 11 10 9 13 13 O 1.42101 * 104.28061 * 181.06936 * 12 11 10 14 14 O 1.42096 * 104.27910 * 308.92824 * 12 11 10 15 15 C 1.81404 * 104.44979 * 65.00030 * 12 11 10 16 16 C 1.52994 * 109.47106 * 180.02562 * 15 12 11 17 17 C 1.53003 * 109.47069 * 179.97438 * 16 15 12 18 18 C 1.53002 * 109.47239 * 179.97438 * 17 16 15 19 19 Cl 1.80298 * 109.47421 * 180.02562 * 18 17 16 20 20 C 1.52999 * 117.49827 * 129.32527 * 9 7 2 21 21 C 1.52998 * 117.49954 * 60.66535 * 9 7 2 22 22 H 0.97001 * 120.00377 * 4.99678 * 1 2 3 23 23 H 1.09001 * 109.47033 * 54.33686 * 10 9 7 24 24 H 1.09003 * 109.47087 * 174.32890 * 10 9 7 25 25 H 0.97003 * 120.00052 * 339.13370 * 11 10 9 26 26 H 1.08998 * 109.46714 * 300.00122 * 15 12 11 27 27 H 1.09001 * 109.46995 * 60.00334 * 15 12 11 28 28 H 1.08997 * 109.47557 * 299.99962 * 16 15 12 29 29 H 1.08998 * 109.47638 * 60.00269 * 16 15 12 30 30 H 1.08994 * 109.47398 * 299.99778 * 17 16 15 31 31 H 1.09001 * 109.46805 * 60.00203 * 17 16 15 32 32 H 1.09007 * 109.47145 * 300.00110 * 18 17 16 33 33 H 1.09000 * 109.47028 * 59.99888 * 18 17 16 34 34 H 1.09001 * 117.50026 * 359.97438 * 20 9 7 35 35 H 1.08999 * 117.50119 * 145.02174 * 20 9 7 36 36 H 1.09004 * 117.49455 * 214.98044 * 21 9 7 37 37 H 1.09002 * 117.49844 * 359.96940 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0819 -1.1955 -0.0775 9 6 1.2545 -2.4972 0.1000 10 6 0.9145 -2.9551 1.5197 11 7 2.1509 -3.2607 2.2435 12 16 2.1587 -3.2762 3.8994 13 8 3.5046 -3.5787 4.2407 14 8 1.5719 -2.0346 4.2643 15 6 1.0644 -4.6528 4.3444 16 6 0.9875 -4.7712 5.8678 17 6 0.0639 -5.9319 6.2432 18 6 -0.0124 -6.0507 7.7667 19 17 -1.1001 -7.4189 8.2090 20 6 1.5762 -3.5789 -0.9331 21 6 0.2486 -2.8205 -1.0066 22 1 -0.4851 0.8368 -0.0732 23 1 0.3765 -2.1615 2.0383 24 1 0.2901 -3.8474 1.4739 25 1 2.9650 -3.4540 1.7529 26 1 0.0675 -4.4684 3.9439 27 1 1.4581 -5.5795 3.9270 28 1 1.9842 -4.9552 6.2688 29 1 0.5935 -3.8445 6.2850 30 1 -0.9327 -5.7474 5.8424 31 1 0.4575 -6.8588 5.8261 32 1 0.9844 -6.2355 8.1672 33 1 -0.4057 -5.1238 8.1842 34 1 2.3300 -3.3479 -1.6857 35 1 1.5451 -4.6168 -0.6015 36 1 -0.6554 -3.3597 -0.7232 37 1 0.1290 -2.0903 -1.8071 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404170555.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:15 Heat of formation + Delta-G solvation = -102.082865 kcal Electronic energy + Delta-G solvation = -19780.312614 eV Core-core repulsion = 16516.760884 eV Total energy + Delta-G solvation = -3263.551730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.080 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.75678 -38.04121 -37.42161 -36.92737 -36.12021 -34.81583 -33.87635 -31.12938 -27.82177 -26.57006 -25.19155 -22.83146 -22.36751 -21.14204 -20.11375 -18.65027 -18.07263 -17.30839 -17.22317 -16.69254 -16.49467 -15.79636 -15.44939 -15.22206 -14.94536 -14.61522 -14.39244 -13.99158 -13.69674 -13.27694 -13.15803 -13.03015 -12.95118 -12.94188 -12.84884 -12.82023 -12.64107 -12.37703 -11.92800 -11.83639 -11.74177 -11.31572 -11.25424 -11.23577 -10.93389 -10.36201 -10.15461 -9.84894 -8.08248 -6.17963 -0.62961 1.37833 1.37964 1.42617 1.46661 1.90322 2.42784 2.90908 3.20838 3.34282 3.47119 3.59091 3.80256 4.02768 4.09713 4.17374 4.28332 4.52234 4.56103 4.60515 4.62370 4.67328 4.72357 4.78842 4.86298 5.06906 5.10046 5.21713 5.37946 5.39259 5.70807 5.80081 5.85787 6.30133 6.45292 6.87369 7.49618 8.98182 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.022959 B = 0.003462 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.281666 B = 8085.650172 C = 8423.304390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.505 4.505 8 H 0.048 0.952 9 C 0.002 3.998 10 C 0.164 3.836 11 N -1.103 6.103 12 S 2.605 3.395 13 O -0.997 6.997 14 O -1.005 7.005 15 C -0.601 4.601 16 C -0.122 4.122 17 C -0.118 4.118 18 C -0.035 4.035 19 Cl -0.208 7.208 20 C -0.182 4.182 21 C -0.152 4.152 22 H 0.259 0.741 23 H 0.046 0.954 24 H 0.075 0.925 25 H 0.417 0.583 26 H 0.151 0.849 27 H 0.165 0.835 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.110 0.890 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.225 -14.883 11.754 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.000 4.000 10 C 0.038 3.962 11 N -0.861 5.861 12 S 2.703 3.297 13 O -0.988 6.988 14 O -0.996 6.996 15 C -0.735 4.735 16 C -0.162 4.162 17 C -0.157 4.157 18 C -0.097 4.097 19 Cl -0.181 7.181 20 C -0.219 4.219 21 C -0.191 4.191 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.251 0.749 26 H 0.169 0.831 27 H 0.183 0.817 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.133 -14.165 12.484 18.915 hybrid contribution 0.261 0.877 -0.679 1.139 sum -0.872 -13.288 11.806 17.796 Atomic orbital electron populations 1.70024 1.06538 1.27127 1.50205 1.25540 0.95610 1.01407 0.94808 0.86014 0.78867 0.80744 0.78446 1.19466 1.20861 1.20803 1.20667 0.92551 0.90598 1.50513 0.93373 1.19043 0.99977 0.93354 0.87611 1.20737 0.84081 0.97903 0.93482 1.55067 1.19176 1.87230 1.24643 1.04820 0.75038 0.76921 0.72964 1.93517 1.35368 1.86805 1.83112 1.93556 1.80339 1.42706 1.82950 1.30390 1.17495 1.19547 1.06043 1.21432 1.02818 1.01270 0.90634 1.21826 1.01089 0.98917 0.93868 1.24583 0.96743 0.90739 0.97652 1.98726 1.70965 1.54229 1.94229 1.23029 0.98762 0.96565 1.03533 1.22422 0.92354 1.01642 1.02663 0.93209 0.93507 0.90693 0.74887 0.83084 0.81681 0.88973 0.89845 0.89924 0.89290 0.87189 0.87653 0.91014 0.87905 0.89846 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.82 12.65 21.45 0.27 -50.55 16 2 C 0.03 1.49 5.43 84.66 0.46 1.95 16 3 Si 0.93 44.57 29.54 68.60 2.03 46.60 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.51 -26.89 8.75 25.60 0.22 -26.67 16 8 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 9 C 0.00 0.09 1.49 -52.93 -0.08 0.01 16 10 C 0.16 6.30 6.00 86.38 0.52 6.82 16 11 N -1.10 -37.16 5.77 -187.50 -1.08 -38.24 16 12 S 2.60 79.47 5.46 -56.49 -0.31 79.16 16 13 O -1.00 -34.65 18.08 -127.65 -2.31 -36.96 16 14 O -1.01 -41.13 17.44 -127.65 -2.23 -43.35 16 15 C -0.60 -10.38 6.07 71.98 0.44 -9.95 16 16 C -0.12 -1.80 5.22 30.59 0.16 -1.64 16 17 C -0.12 -1.36 5.34 30.60 0.16 -1.20 16 18 C -0.03 -0.37 6.66 71.98 0.48 0.11 16 19 Cl -0.21 -3.24 29.15 -2.72 -0.08 -3.32 16 20 C -0.18 -6.78 9.96 30.62 0.30 -6.48 16 21 C -0.15 -6.47 9.15 30.62 0.28 -6.19 16 22 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 23 H 0.05 2.12 7.60 -2.39 -0.02 2.10 16 24 H 0.08 2.21 8.09 -2.39 -0.02 2.19 16 25 H 0.42 13.61 8.66 -96.75 -0.84 12.77 16 26 H 0.15 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.17 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 2.75 8.14 -2.39 -0.02 2.74 16 35 H 0.10 3.07 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -71.84 341.64 -0.54 -72.38 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.22 Total: 17.51 kcal Atomic # 6 Polarization: -46.18 SS G_CDS: 2.95 Total: -43.24 kcal Atomic # 7 Polarization: -87.98 SS G_CDS: -0.81 Total: -88.79 kcal Atomic # 8 Polarization: -75.77 SS G_CDS: -4.53 Total: -80.31 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 79.47 SS G_CDS: -0.31 Total: 79.16 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.08 Total: -3.32 kcal Total: -71.84 -0.54 -72.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404170555.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.701 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds