Wall clock time and date at job start Tue Mar 31 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48507 * 109.47069 * 239.99959 * 3 2 1 5 5 H 1.48498 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47272 * 120.00019 * 3 2 1 7 7 C 1.37877 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00162 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.81402 * 103.00285 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.43310 * 56.08003 * 11 10 9 13 13 C 1.54628 * 110.48865 * 178.76889 * 11 10 9 14 14 C 1.54660 * 101.68199 * 93.66316 * 13 11 10 15 15 N 1.46766 * 105.38583 * 25.76765 * 14 13 11 16 16 C 1.40045 * 124.35157 * 162.85255 * 15 14 13 17 17 C 1.38807 * 120.07542 * 269.72468 * 16 15 14 18 18 C 1.38146 * 119.95061 * 179.97438 * 17 16 15 19 19 C 1.38277 * 120.11177 * 0.02562 * 18 17 16 20 20 C 1.38261 * 120.16023 * 359.97438 * 19 18 17 21 21 C 1.38311 * 120.04117 * 359.74533 * 20 19 18 22 22 F 1.35104 * 120.05392 * 180.27248 * 21 20 19 23 23 C 1.34417 * 111.29669 * 342.58918 * 15 14 13 24 24 O 1.21288 * 124.94181 * 180.69781 * 23 15 14 25 25 H 0.97001 * 120.00007 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47466 * 59.99242 * 9 7 2 27 27 H 1.09005 * 109.46834 * 299.99058 * 9 7 2 28 28 H 1.09001 * 110.96653 * 211.99421 * 13 11 10 29 29 H 1.08994 * 110.97175 * 335.72438 * 13 11 10 30 30 H 1.08999 * 110.39931 * 266.73889 * 14 13 11 31 31 H 1.09001 * 110.17882 * 144.67987 * 14 13 11 32 32 H 1.08000 * 120.02924 * 0.02562 * 17 16 15 33 33 H 1.08007 * 119.94264 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.92111 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.98334 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 16 2.4297 -3.8779 0.0005 11 6 1.3515 -5.3367 0.0013 12 1 0.6667 -5.3042 -0.8460 13 6 2.1943 -6.6327 -0.0297 14 6 2.3106 -6.9668 1.4759 15 7 1.1350 -6.3514 2.1032 16 6 0.6547 -6.6821 3.3765 17 6 -0.2895 -7.6888 3.5239 18 6 -0.7612 -8.0132 4.7812 19 6 -0.2945 -7.3365 5.8931 20 6 0.6460 -6.3330 5.7515 21 6 1.1270 -6.0068 4.4964 22 9 2.0501 -5.0301 4.3584 23 6 0.5820 -5.4256 1.3008 24 8 -0.3919 -4.7581 1.5785 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 1.6739 -7.4236 -0.5698 29 1 3.1772 -6.4485 -0.4632 30 1 3.2249 -6.5418 1.8899 31 1 2.2950 -8.0466 1.6237 32 1 -0.6547 -8.2185 2.6565 33 1 -1.4956 -8.7968 4.8958 34 1 -0.6656 -7.5924 6.8745 35 1 1.0082 -5.8061 6.6219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413013256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:07 Heat of formation + Delta-G solvation = -47.427422 kcal Electronic energy + Delta-G solvation = -21114.953128 eV Core-core repulsion = 17732.743980 eV Total energy + Delta-G solvation = -3382.209148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.79695 -40.57545 -38.63472 -36.23078 -33.12709 -33.06136 -30.78840 -29.07556 -28.49575 -27.48263 -23.44202 -23.15040 -22.84803 -21.69255 -19.92678 -17.81215 -17.19106 -17.04751 -16.47067 -16.12054 -15.57199 -15.30689 -15.01582 -14.91718 -14.30021 -14.19920 -13.75398 -13.63166 -13.19669 -12.90307 -12.62879 -12.41135 -12.33495 -12.11324 -12.07445 -11.59958 -11.52535 -11.33994 -10.80648 -10.62115 -10.10873 -9.81697 -9.50486 -9.17361 -8.96479 -8.83024 -8.75129 -8.53977 -6.78856 -6.10244 -4.16121 0.89403 1.01558 2.10311 2.89179 3.11176 3.32588 3.34255 3.35510 3.39664 3.80600 4.14728 4.41000 4.43198 4.52378 4.60147 4.72208 4.92040 5.00750 5.05847 5.14499 5.25744 5.30099 5.48849 5.64107 5.79355 5.81950 5.90339 5.94641 6.07905 6.14341 6.42473 6.88840 7.07087 7.19187 7.33393 7.80473 8.07647 8.36455 8.84751 9.46031 11.00589 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004554 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.237065 B = 6147.290575 C = 6822.688794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.087 3.913 10 S -0.252 6.252 11 C -0.104 4.104 12 H 0.116 0.884 13 C -0.106 4.106 14 C 0.110 3.890 15 N -0.582 5.582 16 C 0.117 3.883 17 C -0.084 4.084 18 C -0.127 4.127 19 C -0.088 4.088 20 C -0.151 4.151 21 C 0.111 3.889 22 F -0.124 7.124 23 C 0.533 3.467 24 O -0.500 6.500 25 H 0.266 0.734 26 H 0.037 0.963 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.584 -20.353 7.873 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.084 0.916 9 C -0.059 4.059 10 S -0.024 6.024 11 C -0.235 4.235 12 H 0.134 0.866 13 C -0.144 4.144 14 C -0.011 4.011 15 N -0.315 5.315 16 C 0.026 3.974 17 C -0.103 4.103 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.171 4.171 21 C 0.090 3.910 22 F -0.102 7.102 23 C 0.318 3.682 24 O -0.372 6.372 25 H 0.075 0.925 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.024 -19.795 8.008 21.449 hybrid contribution -0.765 1.145 0.010 1.377 sum 1.260 -18.650 8.018 20.339 Atomic orbital electron populations 1.69977 1.06112 1.27344 1.49064 1.24961 0.94948 0.99168 0.94674 0.86424 0.79401 0.81982 0.78888 1.19900 1.21026 1.19931 1.20590 0.93253 0.88761 1.52998 0.91642 1.21198 0.93506 0.90170 1.01070 1.86628 1.18427 1.00063 1.97238 1.23802 1.01308 0.99837 0.98592 0.86641 1.22503 1.01761 0.94832 0.95298 1.22209 0.87970 0.98108 0.92853 1.45445 1.30778 1.41113 1.14194 1.17436 0.98662 0.97863 0.83450 1.21265 0.94907 0.95737 0.98400 1.21086 1.00792 1.00935 0.91781 1.21062 0.95587 0.94608 0.99384 1.21144 0.99868 1.00236 0.95821 1.18170 0.90512 0.88391 0.93950 1.91578 1.62722 1.59339 1.96587 1.20968 0.83077 0.78023 0.86108 1.90787 1.25727 1.43474 1.77241 0.92454 0.94487 0.93394 0.89186 0.87990 0.90288 0.90185 0.84839 0.84904 0.84749 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 3 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.29 9.13 -34.44 -0.31 -15.61 16 8 H 0.07 1.90 7.71 -52.48 -0.40 1.50 16 9 C 0.09 2.45 5.53 36.00 0.20 2.65 16 10 S -0.25 -5.58 21.00 -107.50 -2.26 -7.84 16 11 C -0.10 -1.83 3.45 -26.74 -0.09 -1.92 16 12 H 0.12 1.99 8.14 -51.93 -0.42 1.57 16 13 C -0.11 -1.25 6.74 -25.00 -0.17 -1.42 16 14 C 0.11 1.32 7.29 -3.02 -0.02 1.29 16 15 N -0.58 -9.24 2.78 -112.09 -0.31 -9.55 16 16 C 0.12 1.73 5.39 -83.60 -0.45 1.28 16 17 C -0.08 -0.97 9.97 -39.40 -0.39 -1.36 16 18 C -0.13 -1.17 10.04 -39.60 -0.40 -1.57 16 19 C -0.09 -0.81 10.04 -39.56 -0.40 -1.20 16 20 C -0.15 -1.75 10.02 -39.55 -0.40 -2.14 16 21 C 0.11 1.68 7.31 -39.26 -0.29 1.39 16 22 F -0.12 -2.24 17.08 2.25 0.04 -2.20 16 23 C 0.53 10.55 7.16 -10.86 -0.08 10.47 16 24 O -0.50 -12.25 16.86 5.55 0.09 -12.16 16 25 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 26 H 0.04 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.05 1.49 7.29 -51.92 -0.38 1.11 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.10 1.13 7.87 -51.93 -0.41 0.72 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 323.51 15.07 4.88 4.88 Total: -1.00 -35.78 323.51 -8.87 -44.65 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -4.13 Total: -2.09 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.89 Total: -6.26 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: 0.42 Total: -36.16 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: -5.58 SS G_CDS: -2.26 Total: -7.84 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.78 -8.87 -44.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.776 kcal (2) G-P(sol) polarization free energy of solvation -35.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds