Wall clock time and date at job start Tue Mar 31 2020 07:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00045 * 2 1 4 4 H 1.48507 * 109.47069 * 239.99959 * 3 2 1 5 5 H 1.48498 * 109.47312 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47272 * 120.00019 * 3 2 1 7 7 C 1.37877 * 119.99781 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99991 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00162 * 0.02562 * 7 2 1 10 10 S 1.81397 * 109.47150 * 179.97438 * 9 7 2 11 11 C 1.81402 * 103.00285 * 179.97438 * 10 9 7 12 12 H 1.09000 * 110.43310 * 56.08003 * 11 10 9 13 13 C 1.54628 * 110.48865 * 178.76889 * 11 10 9 14 14 C 1.54660 * 101.68199 * 93.66316 * 13 11 10 15 15 N 1.46766 * 105.38583 * 25.76765 * 14 13 11 16 16 C 1.40045 * 124.35157 * 162.85255 * 15 14 13 17 17 C 1.38807 * 120.07542 * 269.72468 * 16 15 14 18 18 C 1.38146 * 119.95061 * 179.97438 * 17 16 15 19 19 C 1.38277 * 120.11177 * 0.02562 * 18 17 16 20 20 C 1.38261 * 120.16023 * 359.97438 * 19 18 17 21 21 C 1.38311 * 120.04117 * 359.74533 * 20 19 18 22 22 F 1.35104 * 120.05392 * 180.27248 * 21 20 19 23 23 C 1.34417 * 111.29669 * 342.58918 * 15 14 13 24 24 O 1.21288 * 124.94181 * 180.69781 * 23 15 14 25 25 H 0.97001 * 120.00007 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47466 * 59.99242 * 9 7 2 27 27 H 1.09005 * 109.46834 * 299.99058 * 9 7 2 28 28 H 1.09001 * 110.96653 * 211.99421 * 13 11 10 29 29 H 1.08994 * 110.97175 * 335.72438 * 13 11 10 30 30 H 1.08999 * 110.39931 * 266.73889 * 14 13 11 31 31 H 1.09001 * 110.17882 * 144.67987 * 14 13 11 32 32 H 1.08000 * 120.02924 * 0.02562 * 17 16 15 33 33 H 1.08007 * 119.94264 * 180.02562 * 18 17 16 34 34 H 1.08001 * 119.92111 * 179.97438 * 19 18 17 35 35 H 1.08001 * 119.98334 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 16 2.4297 -3.8779 0.0005 11 6 1.3515 -5.3367 0.0013 12 1 0.6667 -5.3042 -0.8460 13 6 2.1943 -6.6327 -0.0297 14 6 2.3106 -6.9668 1.4759 15 7 1.1350 -6.3514 2.1032 16 6 0.6547 -6.6821 3.3765 17 6 -0.2895 -7.6888 3.5239 18 6 -0.7612 -8.0132 4.7812 19 6 -0.2945 -7.3365 5.8931 20 6 0.6460 -6.3330 5.7515 21 6 1.1270 -6.0068 4.4964 22 9 2.0501 -5.0301 4.3584 23 6 0.5820 -5.4256 1.3008 24 8 -0.3919 -4.7581 1.5785 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 1.6739 -7.4236 -0.5698 29 1 3.1772 -6.4485 -0.4632 30 1 3.2249 -6.5418 1.8899 31 1 2.2950 -8.0466 1.6237 32 1 -0.6547 -8.2185 2.6565 33 1 -1.4956 -8.7968 4.8958 34 1 -0.6656 -7.5924 6.8745 35 1 1.0082 -5.8061 6.6219 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413013256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:06 Heat of formation + Delta-G solvation = -70.110256 kcal Electronic energy + Delta-G solvation = -21115.936730 eV Core-core repulsion = 17732.743980 eV Total energy + Delta-G solvation = -3383.192750 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.01484 -41.84984 -39.63584 -37.67480 -35.34490 -34.20411 -31.67045 -30.77189 -30.10485 -28.77468 -25.33176 -24.42881 -23.79341 -22.94081 -21.14040 -18.98706 -18.83303 -18.23824 -18.18134 -17.48803 -16.88353 -16.80211 -16.49520 -16.10633 -15.86377 -15.29638 -15.04861 -14.85043 -14.64640 -14.50227 -14.27481 -14.17655 -13.88071 -13.34511 -12.98211 -12.92960 -12.79593 -12.73131 -12.46194 -12.32110 -11.91006 -11.57876 -11.48498 -10.83741 -10.79722 -10.10230 -10.05499 -9.75739 -8.64459 -8.36564 -6.53535 -0.03334 0.12889 0.48696 1.34019 1.40125 1.41863 1.50608 1.72112 1.94958 2.32709 2.47920 2.96649 3.10448 3.20510 3.33924 3.73663 3.83174 4.00628 4.02857 4.26428 4.27199 4.37745 4.41851 4.62995 4.84337 4.87976 4.95026 4.95608 4.96372 5.08644 5.21224 5.32918 5.48772 5.49777 5.73260 5.80363 5.90060 6.54931 6.93342 7.15125 8.75771 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.004554 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.237065 B = 6147.290575 C = 6822.688794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.984 3.016 4 H -0.258 1.258 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.088 3.912 10 S -0.236 6.236 11 C -0.104 4.104 12 H 0.117 0.883 13 C -0.088 4.088 14 C 0.103 3.897 15 N -0.571 5.571 16 C 0.081 3.919 17 C -0.088 4.088 18 C -0.112 4.112 19 C -0.076 4.076 20 C -0.154 4.154 21 C 0.064 3.936 22 F -0.155 7.155 23 C 0.520 3.480 24 O -0.565 6.565 25 H 0.270 0.730 26 H 0.010 0.990 27 H 0.002 0.998 28 H 0.134 0.866 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.150 0.850 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -22.964 8.661 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.060 4.060 10 S -0.007 6.007 11 C -0.236 4.236 12 H 0.135 0.865 13 C -0.126 4.126 14 C -0.017 4.017 15 N -0.302 5.302 16 C -0.010 4.010 17 C -0.107 4.107 18 C -0.130 4.130 19 C -0.094 4.094 20 C -0.173 4.173 21 C 0.043 3.957 22 F -0.134 7.134 23 C 0.306 3.694 24 O -0.443 6.443 25 H 0.079 0.921 26 H 0.028 0.972 27 H 0.020 0.980 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.168 0.832 33 H 0.192 0.808 34 H 0.194 0.806 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.775 -22.461 8.806 24.284 hybrid contribution -1.057 1.739 -0.123 2.039 sum 1.717 -20.722 8.683 22.533 Atomic orbital electron populations 1.70127 1.08119 1.28697 1.49611 1.26087 0.95900 1.03587 0.93516 0.85233 0.78130 0.76497 0.79588 1.18209 1.19966 1.19144 1.20976 0.93484 0.90031 1.53602 0.91416 1.20766 0.94230 0.93489 0.97512 1.86153 1.17532 0.99865 1.97186 1.24028 1.01583 0.99986 0.97985 0.86513 1.22669 1.01822 0.92200 0.95912 1.22562 0.86234 1.00558 0.92393 1.45520 1.30770 1.39580 1.14287 1.17864 1.00720 0.99711 0.82668 1.21531 0.93872 0.94961 1.00344 1.21612 1.00087 1.00818 0.90532 1.21590 0.93663 0.92696 1.01425 1.21465 1.00100 1.00913 0.94822 1.18712 0.91904 0.89178 0.95901 1.91486 1.64130 1.60908 1.96865 1.21336 0.82662 0.78080 0.87296 1.90737 1.28765 1.46099 1.78702 0.92070 0.97178 0.98005 0.84748 0.86541 0.90971 0.85543 0.83244 0.80806 0.80602 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.70 13.29 21.45 0.28 -59.42 16 2 C 0.01 0.59 5.46 84.65 0.46 1.06 16 3 Si 0.98 46.34 29.54 68.60 2.03 48.36 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 7 C -0.54 -33.56 9.13 25.60 0.23 -33.33 16 8 H 0.07 4.05 7.71 -2.91 -0.02 4.03 16 9 C 0.09 5.26 5.53 71.23 0.39 5.66 16 10 S -0.24 -10.83 21.00 -56.49 -1.19 -12.02 16 11 C -0.10 -3.71 3.45 30.59 0.11 -3.61 16 12 H 0.12 4.12 8.14 -2.39 -0.02 4.10 16 13 C -0.09 -1.85 6.74 31.71 0.21 -1.63 16 14 C 0.10 2.24 7.29 86.89 0.63 2.88 16 15 N -0.57 -18.16 2.78 -627.13 -1.74 -19.90 16 16 C 0.08 2.39 5.39 38.16 0.21 2.60 16 17 C -0.09 -1.85 9.97 22.38 0.22 -1.63 16 18 C -0.11 -1.63 10.04 22.26 0.22 -1.41 16 19 C -0.08 -1.12 10.04 22.28 0.22 -0.90 16 20 C -0.15 -3.40 10.02 22.29 0.22 -3.18 16 21 C 0.06 1.99 7.31 22.48 0.16 2.15 16 22 F -0.16 -6.01 17.08 44.97 0.77 -5.24 16 23 C 0.52 21.46 7.16 87.90 0.63 22.09 16 24 O -0.56 -29.84 16.86 -3.05 -0.05 -29.89 16 25 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 26 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.00 0.11 7.29 -2.39 -0.02 0.09 16 28 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.12 2.20 7.87 -2.39 -0.02 2.18 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 34 H 0.18 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -87.33 323.51 5.13 -82.20 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: 1.10 Total: 5.16 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 3.94 Total: -9.26 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -1.46 Total: -79.32 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -0.05 Total: -29.89 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.77 Total: -5.24 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: -10.83 SS G_CDS: -1.19 Total: -12.02 kcal Total: -87.33 5.13 -82.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413013256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.087 kcal (2) G-P(sol) polarization free energy of solvation -87.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds