Wall clock time and date at job start Tue Mar 31 2020 07:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99462 * 2 1 4 4 H 1.48502 * 109.47188 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47209 * 120.00275 * 3 2 1 6 6 H 1.48506 * 109.46873 * 239.99995 * 3 2 1 7 7 C 1.37871 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.81396 * 102.99673 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.44246 * 305.70087 * 11 10 9 13 13 C 1.54636 * 110.48628 * 183.15703 * 11 10 9 14 14 C 1.54832 * 101.60359 * 266.08249 * 13 11 10 15 15 N 1.46759 * 105.49615 * 334.56681 * 14 13 11 16 16 C 1.40032 * 124.34673 * 197.01537 * 15 14 13 17 17 C 1.38851 * 120.04058 * 173.96334 * 16 15 14 18 18 C 1.38116 * 119.95337 * 179.72193 * 17 16 15 19 19 C 1.38478 * 120.04355 * 0.57590 * 18 17 16 20 20 F 1.35102 * 119.95474 * 179.70160 * 19 18 17 21 21 C 1.38473 * 120.08969 * 359.67602 * 19 18 17 22 22 C 1.38120 * 120.04272 * 0.04697 * 21 19 18 23 23 C 1.34411 * 111.30342 * 17.03604 * 15 14 13 24 24 O 1.21293 * 124.94575 * 179.62621 * 23 15 14 25 25 H 0.97001 * 119.99691 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46596 * 299.99485 * 9 7 2 27 27 H 1.08995 * 109.47345 * 59.99287 * 9 7 2 28 28 H 1.08995 * 110.96434 * 24.24104 * 13 11 10 29 29 H 1.08999 * 110.96950 * 148.00000 * 13 11 10 30 30 H 1.09005 * 110.21522 * 215.56406 * 14 13 11 31 31 H 1.09000 * 110.32485 * 93.62280 * 14 13 11 32 32 H 1.07998 * 120.03013 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.97899 * 180.27428 * 18 17 16 34 34 H 1.08000 * 119.98261 * 180.02562 * 21 19 18 35 35 H 1.08005 * 120.01862 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0005 11 6 1.3519 -5.3366 0.0013 12 1 0.6466 -5.2882 0.8309 13 6 2.1934 -6.6315 0.0812 14 6 2.3426 -6.9987 -1.4155 15 7 1.1866 -6.3914 -2.0854 16 6 0.7378 -6.7462 -3.3635 17 6 -0.4391 -6.2039 -3.8623 18 6 -0.8771 -6.5507 -5.1255 19 6 -0.1496 -7.4477 -5.8895 20 9 -0.5829 -7.7903 -7.1225 21 6 1.0216 -7.9937 -5.3918 22 6 1.4659 -7.6450 -4.1313 23 6 0.6143 -5.4506 -1.3147 24 8 -0.3531 -4.7895 -1.6283 25 1 -0.4850 -0.8401 0.0004 26 1 0.6243 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 3.1648 -6.4378 0.5361 29 1 1.6588 -7.4112 0.6236 30 1 2.3256 -8.0814 -1.5412 31 1 3.2694 -6.5876 -1.8157 32 1 -1.0095 -5.5083 -3.2648 33 1 -1.7901 -6.1257 -5.5156 34 1 1.5877 -8.6928 -5.9893 35 1 2.3793 -8.0714 -3.7433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413020890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:09 Heat of formation + Delta-G solvation = -53.891410 kcal Electronic energy + Delta-G solvation = -20696.498745 eV Core-core repulsion = 17314.009298 eV Total energy + Delta-G solvation = -3382.489448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.92407 -41.09806 -38.53295 -36.61694 -33.49612 -33.08341 -31.31481 -28.78474 -28.23445 -27.68311 -23.75781 -23.25660 -22.99174 -21.48216 -20.06916 -17.94333 -17.55827 -17.38793 -16.78698 -16.38810 -15.65316 -15.48643 -14.90252 -14.67446 -14.19663 -14.05742 -13.87894 -13.70941 -13.67689 -13.37884 -13.12644 -12.72929 -12.58071 -12.40292 -12.15228 -11.82300 -11.47869 -11.31595 -10.76802 -10.57535 -10.19138 -10.12649 -9.88347 -9.29970 -9.26701 -8.85705 -8.55251 -7.95621 -7.03893 -6.53135 -4.26340 0.93145 1.07148 1.88706 2.61754 2.82426 3.39319 3.41489 3.46426 3.57698 3.61780 4.05282 4.18541 4.20809 4.44705 4.61173 4.66378 4.70453 4.80446 5.03156 5.16530 5.18232 5.25227 5.40666 5.44272 5.60667 5.70154 5.75225 5.94382 5.97685 6.16901 6.37243 6.76961 6.84318 6.88388 6.91701 7.76835 8.00345 8.23643 8.64095 9.44229 10.87096 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.003967 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.564896 B = 7055.682731 C = 7990.097503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.027 3.973 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.597 4.597 8 H 0.060 0.940 9 C 0.068 3.932 10 S -0.228 6.228 11 C -0.112 4.112 12 H 0.118 0.882 13 C -0.106 4.106 14 C 0.098 3.902 15 N -0.557 5.557 16 C 0.169 3.831 17 C -0.130 4.130 18 C -0.120 4.120 19 C 0.063 3.937 20 F -0.144 7.144 21 C -0.124 4.124 22 C -0.134 4.134 23 C 0.529 3.471 24 O -0.493 6.493 25 H 0.271 0.729 26 H 0.028 0.972 27 H 0.039 0.961 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.165 0.835 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -19.189 -5.387 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.179 4.179 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.637 4.637 8 H 0.078 0.922 9 C -0.079 4.079 10 S 0.001 5.999 11 C -0.243 4.243 12 H 0.136 0.864 13 C -0.144 4.144 14 C -0.024 4.024 15 N -0.280 5.280 16 C 0.074 3.926 17 C -0.150 4.150 18 C -0.139 4.139 19 C 0.043 3.957 20 F -0.123 7.123 21 C -0.144 4.144 22 C -0.155 4.155 23 C 0.315 3.685 24 O -0.367 6.367 25 H 0.081 0.919 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.124 0.876 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.182 0.818 33 H 0.157 0.843 34 H 0.156 0.844 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.929 -17.153 -5.528 18.446 hybrid contribution -1.142 -1.807 -0.248 2.152 sum 2.788 -18.960 -5.776 20.016 Atomic orbital electron populations 1.70772 1.06831 1.30869 1.45066 1.25954 0.96366 1.02456 0.93163 0.83437 0.74824 0.74607 0.76800 1.20474 1.21097 1.21147 1.21490 0.94580 0.89712 1.57880 0.92169 1.21277 0.94456 0.92300 0.99827 1.86702 1.17219 0.98883 1.97137 1.23906 1.01872 1.00310 0.98254 0.86367 1.22551 1.01939 0.94647 0.95272 1.22351 0.88571 0.98869 0.92589 1.45728 1.30383 1.37664 1.14265 1.17835 0.94075 0.96256 0.84446 1.21575 0.95830 1.01511 0.96110 1.21073 1.00843 0.97762 0.94270 1.17658 0.96099 1.00300 0.81662 1.91477 1.89566 1.91222 1.40013 1.20861 0.95757 1.01520 0.96238 1.20588 1.00806 1.00023 0.94109 1.21002 0.82801 0.78035 0.86682 1.90658 1.25663 1.44579 1.75791 0.91879 0.95364 0.94281 0.87624 0.88913 0.89423 0.89494 0.81830 0.84339 0.84447 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.65 55.43 0.76 -26.83 16 2 C 0.03 0.79 5.46 -17.82 -0.10 0.69 16 3 Si 1.08 25.17 29.90 -169.99 -5.08 20.08 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.60 -17.17 9.13 -34.44 -0.31 -17.48 16 8 H 0.06 1.72 7.71 -52.49 -0.40 1.32 16 9 C 0.07 1.80 4.90 36.01 0.18 1.98 16 10 S -0.23 -4.69 20.99 -107.50 -2.26 -6.95 16 11 C -0.11 -1.77 3.44 -26.73 -0.09 -1.86 16 12 H 0.12 1.84 8.14 -51.93 -0.42 1.41 16 13 C -0.11 -1.08 6.75 -24.91 -0.17 -1.25 16 14 C 0.10 0.97 6.28 -2.94 -0.02 0.95 16 15 N -0.56 -7.77 3.14 -112.04 -0.35 -8.13 16 16 C 0.17 2.30 6.60 -83.66 -0.55 1.75 16 17 C -0.13 -1.91 9.28 -39.40 -0.37 -2.28 16 18 C -0.12 -1.54 10.02 -39.54 -0.40 -1.93 16 19 C 0.06 0.76 7.30 -39.41 -0.29 0.48 16 20 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 21 C -0.12 -1.29 10.02 -39.54 -0.40 -1.69 16 22 C -0.13 -1.43 9.40 -39.40 -0.37 -1.80 16 23 C 0.53 9.24 7.15 -10.86 -0.08 9.16 16 24 O -0.49 -10.41 14.10 5.55 0.08 -10.33 16 25 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 26 H 0.03 0.76 8.01 -51.92 -0.42 0.35 16 27 H 0.04 1.11 7.27 -51.93 -0.38 0.74 16 28 H 0.11 1.00 7.87 -51.93 -0.41 0.59 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.58 7.70 -51.93 -0.40 0.18 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.16 2.78 5.27 -52.49 -0.28 2.50 16 33 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.14 1.06 7.01 -52.48 -0.37 0.69 16 LS Contribution 314.70 15.07 4.74 4.74 Total: -1.00 -33.24 314.70 -8.89 -42.13 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -3.86 Total: 0.31 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -2.96 Total: -13.29 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.40 Total: -34.95 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.08 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -2.26 Total: -6.95 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.24 -8.89 -42.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413020890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.766 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds