Wall clock time and date at job start Tue Mar 31 2020 07:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99462 * 2 1 4 4 H 1.48502 * 109.47188 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47209 * 120.00275 * 3 2 1 6 6 H 1.48506 * 109.46873 * 239.99995 * 3 2 1 7 7 C 1.37871 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99790 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00161 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47036 * 179.97438 * 9 7 2 11 11 C 1.81396 * 102.99673 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.44246 * 305.70087 * 11 10 9 13 13 C 1.54636 * 110.48628 * 183.15703 * 11 10 9 14 14 C 1.54832 * 101.60359 * 266.08249 * 13 11 10 15 15 N 1.46759 * 105.49615 * 334.56681 * 14 13 11 16 16 C 1.40032 * 124.34673 * 197.01537 * 15 14 13 17 17 C 1.38851 * 120.04058 * 173.96334 * 16 15 14 18 18 C 1.38116 * 119.95337 * 179.72193 * 17 16 15 19 19 C 1.38478 * 120.04355 * 0.57590 * 18 17 16 20 20 F 1.35102 * 119.95474 * 179.70160 * 19 18 17 21 21 C 1.38473 * 120.08969 * 359.67602 * 19 18 17 22 22 C 1.38120 * 120.04272 * 0.04697 * 21 19 18 23 23 C 1.34411 * 111.30342 * 17.03604 * 15 14 13 24 24 O 1.21293 * 124.94575 * 179.62621 * 23 15 14 25 25 H 0.97001 * 119.99691 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46596 * 299.99485 * 9 7 2 27 27 H 1.08995 * 109.47345 * 59.99287 * 9 7 2 28 28 H 1.08995 * 110.96434 * 24.24104 * 13 11 10 29 29 H 1.08999 * 110.96950 * 148.00000 * 13 11 10 30 30 H 1.09005 * 110.21522 * 215.56406 * 14 13 11 31 31 H 1.09000 * 110.32485 * 93.62280 * 14 13 11 32 32 H 1.07998 * 120.03013 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.97899 * 180.27428 * 18 17 16 34 34 H 1.08000 * 119.98261 * 180.02562 * 21 19 18 35 35 H 1.08005 * 120.01862 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7465 -0.0006 5 1 3.1028 1.6966 1.2125 6 1 3.1028 1.6965 -1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4301 -3.8778 0.0005 11 6 1.3519 -5.3366 0.0013 12 1 0.6466 -5.2882 0.8309 13 6 2.1934 -6.6315 0.0812 14 6 2.3426 -6.9987 -1.4155 15 7 1.1866 -6.3914 -2.0854 16 6 0.7378 -6.7462 -3.3635 17 6 -0.4391 -6.2039 -3.8623 18 6 -0.8771 -6.5507 -5.1255 19 6 -0.1496 -7.4477 -5.8895 20 9 -0.5829 -7.7903 -7.1225 21 6 1.0216 -7.9937 -5.3918 22 6 1.4659 -7.6450 -4.1313 23 6 0.6143 -5.4506 -1.3147 24 8 -0.3531 -4.7895 -1.6283 25 1 -0.4850 -0.8401 0.0004 26 1 0.6243 -2.5567 0.8904 27 1 0.6248 -2.5571 -0.8896 28 1 3.1648 -6.4378 0.5361 29 1 1.6588 -7.4112 0.6236 30 1 2.3256 -8.0814 -1.5412 31 1 3.2694 -6.5876 -1.8157 32 1 -1.0095 -5.5083 -3.2648 33 1 -1.7901 -6.1257 -5.5156 34 1 1.5877 -8.6928 -5.9893 35 1 2.3793 -8.0714 -3.7433 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413020890.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:08 Heat of formation + Delta-G solvation = -73.851720 kcal Electronic energy + Delta-G solvation = -20697.364289 eV Core-core repulsion = 17314.009298 eV Total energy + Delta-G solvation = -3383.354992 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.89103 -42.22621 -39.57479 -37.85047 -35.72235 -34.10968 -32.25903 -30.30180 -29.78839 -28.87575 -25.38576 -24.51559 -24.25994 -22.49470 -21.19983 -19.27870 -18.90753 -18.62042 -18.29804 -17.41892 -16.78757 -16.59059 -16.42035 -15.74948 -15.68432 -15.58810 -15.30209 -15.05922 -14.74737 -14.51758 -14.37878 -14.18485 -13.98210 -13.70377 -13.49449 -13.06256 -12.75263 -12.59244 -12.31289 -12.06357 -11.91574 -11.39574 -11.17535 -11.05630 -10.77914 -10.74529 -10.22706 -8.99154 -8.86639 -8.73943 -6.61455 -0.12164 0.13272 0.47307 1.33722 1.49333 1.56342 1.58332 1.78184 1.84109 2.49022 2.56080 2.90899 3.00588 3.21733 3.25263 3.67333 3.75289 3.81402 3.97620 4.14157 4.19332 4.33923 4.41224 4.56751 4.60105 4.65223 4.86169 4.86290 4.93972 4.99221 5.05018 5.13470 5.38360 5.55579 5.80245 5.89021 5.91594 6.27521 6.75886 7.20456 8.52820 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.003967 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.564896 B = 7055.682731 C = 7990.097503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.026 4.026 3 Si 1.126 2.874 4 H -0.279 1.279 5 H -0.261 1.261 6 H -0.267 1.267 7 C -0.612 4.612 8 H 0.062 0.938 9 C 0.062 3.938 10 S -0.209 6.209 11 C -0.111 4.111 12 H 0.115 0.885 13 C -0.091 4.091 14 C 0.090 3.910 15 N -0.549 5.549 16 C 0.146 3.854 17 C -0.158 4.158 18 C -0.130 4.130 19 C 0.057 3.943 20 F -0.145 7.145 21 C -0.112 4.112 22 C -0.114 4.114 23 C 0.513 3.487 24 O -0.548 6.548 25 H 0.253 0.747 26 H 0.006 0.994 27 H 0.002 0.998 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.097 0.903 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.175 0.825 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.814 -21.983 -5.812 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.226 4.226 3 Si 0.944 3.056 4 H -0.204 1.204 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.650 4.650 8 H 0.080 0.920 9 C -0.086 4.086 10 S 0.020 5.980 11 C -0.242 4.242 12 H 0.133 0.867 13 C -0.129 4.129 14 C -0.030 4.030 15 N -0.272 5.272 16 C 0.052 3.948 17 C -0.178 4.178 18 C -0.149 4.149 19 C 0.037 3.963 20 F -0.124 7.124 21 C -0.131 4.131 22 C -0.134 4.134 23 C 0.299 3.701 24 O -0.426 6.426 25 H 0.062 0.938 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.154 0.846 31 H 0.115 0.885 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.192 0.808 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 7.237 -20.005 -5.962 22.094 hybrid contribution -2.189 -1.134 -0.194 2.473 sum 5.048 -21.139 -6.156 22.589 Atomic orbital electron populations 1.70914 1.08033 1.29795 1.47335 1.27681 0.96364 1.06771 0.91771 0.82861 0.74101 0.70138 0.78470 1.20441 1.18513 1.19249 1.21873 0.94787 0.91104 1.57276 0.92019 1.20929 0.95328 0.95375 0.96971 1.86169 1.16177 0.98549 1.97119 1.24110 1.02101 1.00379 0.97641 0.86673 1.22728 1.01952 0.91741 0.96509 1.22810 0.87124 1.01550 0.91546 1.45820 1.30688 1.36514 1.14173 1.18089 0.94337 0.97544 0.84863 1.21395 0.97186 1.02384 0.96878 1.21105 1.01453 0.98433 0.93928 1.17826 0.96763 1.00201 0.81495 1.91476 1.89730 1.91162 1.40060 1.21290 0.94681 1.00876 0.96230 1.20978 1.01151 0.97947 0.93359 1.21350 0.82580 0.78418 0.87705 1.90645 1.28217 1.46845 1.76941 0.93771 0.97599 0.97954 0.86023 0.85217 0.84606 0.88513 0.85277 0.84049 0.80759 0.80538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.37 13.65 21.45 0.29 -59.08 16 2 C -0.03 -1.56 5.46 84.65 0.46 -1.10 16 3 Si 1.13 50.82 29.90 68.60 2.05 52.87 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 5 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.61 -36.37 9.13 25.60 0.23 -36.14 16 8 H 0.06 3.57 7.71 -2.91 -0.02 3.55 16 9 C 0.06 3.45 4.90 71.24 0.35 3.80 16 10 S -0.21 -8.66 20.99 -56.49 -1.19 -9.85 16 11 C -0.11 -3.44 3.44 30.59 0.11 -3.34 16 12 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 13 C -0.09 -1.50 6.75 31.78 0.21 -1.28 16 14 C 0.09 1.35 6.28 86.96 0.55 1.90 16 15 N -0.55 -14.50 3.14 -626.98 -1.97 -16.47 16 16 C 0.15 3.79 6.60 38.12 0.25 4.05 16 17 C -0.16 -4.89 9.28 22.39 0.21 -4.69 16 18 C -0.13 -3.42 10.02 22.30 0.22 -3.20 16 19 C 0.06 1.29 7.30 22.38 0.16 1.46 16 20 F -0.15 -3.36 17.27 44.97 0.78 -2.59 16 21 C -0.11 -1.88 10.02 22.30 0.22 -1.66 16 22 C -0.11 -1.95 9.40 22.39 0.21 -1.74 16 23 C 0.51 18.44 7.15 87.90 0.63 19.07 16 24 O -0.55 -25.33 14.10 -3.07 -0.04 -25.37 16 25 H 0.25 16.78 7.22 -92.71 -0.67 16.11 16 26 H 0.01 0.34 8.01 -2.39 -0.02 0.32 16 27 H 0.00 0.14 7.27 -2.39 -0.02 0.12 16 28 H 0.12 1.71 7.87 -2.39 -0.02 1.69 16 29 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.14 0.85 7.70 -2.38 -0.02 0.83 16 31 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.13 4.94 5.27 -2.91 -0.02 4.93 16 33 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 34 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.18 1.55 7.01 -2.91 -0.02 1.53 16 Total: -1.00 -80.24 314.70 4.96 -75.28 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 1.21 Total: 8.07 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.82 Total: -22.87 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -1.68 Total: -75.55 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.04 Total: -25.37 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.59 kcal Atomic # 14 Polarization: 50.82 SS G_CDS: 2.05 Total: 52.87 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.19 Total: -9.85 kcal Total: -80.24 4.96 -75.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413020890.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.428 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds