Wall clock time and date at job start Tue Mar 31 2020 06:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99729 * 2 1 4 4 H 1.48498 * 109.47433 * 269.99725 * 3 2 1 5 5 H 1.48497 * 109.47604 * 30.00287 * 3 2 1 6 6 H 1.48505 * 109.46803 * 150.00514 * 3 2 1 7 7 C 1.37878 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00066 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00233 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99867 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.46913 * 180.02562 * 13 11 10 15 15 C 1.37973 * 119.87068 * 264.99762 * 14 13 11 16 16 C 1.38343 * 120.33968 * 179.97438 * 15 14 13 17 17 Cl 1.73601 * 120.12986 * 179.85441 * 16 15 14 18 18 C 1.38491 * 119.73841 * 359.83923 * 16 15 14 19 19 C 1.37699 * 119.96545 * 359.97438 * 18 16 15 20 20 C 1.38916 * 120.80048 * 0.34772 * 19 18 16 21 21 O 1.36413 * 111.30835 * 179.11518 * 20 19 18 22 22 C 1.43775 * 109.09736 * 18.73755 * 21 20 19 23 23 C 1.51652 * 132.15828 * 180.38394 * 19 18 16 24 24 H 0.97001 * 119.99920 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47342 * 59.99786 * 9 7 2 26 26 H 1.08999 * 109.47078 * 299.99940 * 9 7 2 27 27 H 0.97006 * 119.99882 * 0.02562 * 10 9 7 28 28 H 1.09000 * 109.47446 * 60.00759 * 13 11 10 29 29 H 1.08996 * 109.47486 * 299.99961 * 13 11 10 30 30 H 1.08004 * 119.82849 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.01449 * 180.02562 * 18 16 15 32 32 H 1.09002 * 110.74816 * 214.08280 * 22 21 20 33 33 H 1.08999 * 110.74501 * 90.92072 * 22 21 20 34 34 H 1.08998 * 110.93909 * 46.41828 * 23 19 18 35 35 H 1.09001 * 110.93692 * 282.73206 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8833 -0.0033 12 8 0.5613 -5.1050 -0.0035 13 6 2.7331 -6.0287 -0.0038 14 6 1.9796 -7.3339 -0.0050 15 6 1.7258 -7.9820 1.1862 16 6 1.0345 -9.1803 1.1964 17 17 0.7215 -9.9931 2.6981 18 6 0.5929 -9.7287 0.0038 19 6 0.8423 -9.0807 -1.1853 20 6 1.5412 -7.8804 -1.2082 21 8 1.6943 -7.4202 -2.4833 22 6 0.7329 -8.0661 -3.3351 23 6 0.4889 -9.4168 -2.6212 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 3.1567 -3.4354 -0.0022 28 1 3.3596 -5.9715 0.8864 29 1 3.3598 -5.9706 -0.8936 30 1 2.0687 -7.5517 2.1156 31 1 0.0524 -10.6637 0.0066 32 1 1.1450 -8.2249 -4.3316 33 1 -0.1880 -7.4853 -3.3878 34 1 -0.5550 -9.7187 -2.7051 35 1 1.1493 -10.1898 -3.0141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427650634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:26 Heat of formation + Delta-G solvation = -60.558261 kcal Electronic energy + Delta-G solvation = -20690.595005 eV Core-core repulsion = 17293.399965 eV Total energy + Delta-G solvation = -3397.195040 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.24565 -38.82790 -37.74971 -36.24390 -34.20189 -33.51544 -32.30729 -31.08363 -29.38349 -28.22551 -26.48854 -23.58307 -22.73237 -22.19929 -21.13794 -19.57322 -17.50604 -17.16939 -16.85240 -16.42584 -15.95825 -15.56567 -15.10213 -14.73021 -14.30475 -13.93419 -13.58036 -13.46637 -13.30518 -12.93796 -12.71633 -12.56133 -12.07143 -11.95979 -11.89502 -11.82006 -11.45819 -11.25066 -10.98502 -10.86346 -10.80469 -10.51764 -10.30001 -9.38267 -9.21046 -8.78324 -8.72036 -8.06793 -7.85254 -6.15403 -4.22253 1.09503 1.11732 2.05591 3.14361 3.24990 3.31020 3.33485 3.41420 3.48184 4.18750 4.20609 4.37099 4.46590 4.62960 4.85291 4.90872 5.01822 5.20621 5.25092 5.29479 5.36398 5.48241 5.57716 5.61761 5.63920 5.91509 5.99478 6.09195 6.22281 6.40335 7.01342 7.33102 7.46676 7.54035 7.68449 7.98661 8.65238 8.79857 9.13483 9.44471 10.94852 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.003473 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.336931 B = 8060.240795 C = 8952.817628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.713 5.713 11 C 0.502 3.498 12 O -0.550 6.550 13 C -0.103 4.103 14 C -0.060 4.060 15 C -0.064 4.064 16 C -0.062 4.062 17 Cl -0.072 7.072 18 C -0.064 4.064 19 C -0.167 4.167 20 C 0.131 3.869 21 O -0.296 6.296 22 C 0.051 3.949 23 C -0.106 4.106 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.391 0.609 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 -21.084 -2.498 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.361 5.361 11 C 0.286 3.714 12 O -0.428 6.428 13 C -0.143 4.143 14 C -0.061 4.061 15 C -0.082 4.082 16 C -0.089 4.089 17 Cl -0.043 7.043 18 C -0.083 4.083 19 C -0.168 4.168 20 C 0.085 3.915 21 O -0.210 6.210 22 C -0.024 4.024 23 C -0.143 4.143 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.223 0.777 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.713 -20.981 -2.468 21.449 hybrid contribution 0.638 0.886 0.094 1.096 sum 4.351 -20.095 -2.374 20.697 Atomic orbital electron populations 1.69980 1.06123 1.27267 1.48970 1.24955 0.94908 0.99448 0.94720 0.86416 0.79633 0.82652 0.78212 1.20474 1.21015 1.19721 1.21236 0.93280 0.90468 1.53122 0.91873 1.19090 0.88323 0.81956 0.97676 1.46437 1.11099 1.06031 1.72574 1.20244 0.89329 0.84124 0.77675 1.90671 1.16784 1.84841 1.50549 1.20650 0.97965 0.90520 1.05131 1.18457 1.02515 0.96046 0.89124 1.20615 0.97089 0.92923 0.97599 1.20481 1.05124 0.96296 0.86973 1.98352 1.94821 1.78896 1.32226 1.19992 0.99312 0.99921 0.89085 1.20568 1.04740 0.96266 0.95239 1.19381 0.94963 0.91577 0.85607 1.86929 1.54092 1.64766 1.15187 1.23855 0.92818 0.91483 0.94268 1.21778 1.03513 0.98469 0.90508 0.92472 0.95640 0.95570 0.77692 0.88091 0.87954 0.84134 0.84939 0.87505 0.90108 0.88851 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.31 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.72 5.43 -5.20 -0.03 6.70 16 10 N -0.71 -15.19 5.55 -61.47 -0.34 -15.53 16 11 C 0.50 10.21 7.82 -10.99 -0.09 10.12 16 12 O -0.55 -13.55 16.03 5.55 0.09 -13.46 16 13 C -0.10 -1.51 5.79 -29.03 -0.17 -1.68 16 14 C -0.06 -0.90 4.39 -104.35 -0.46 -1.36 16 15 C -0.06 -0.87 9.43 -39.64 -0.37 -1.25 16 16 C -0.06 -0.79 6.33 -39.45 -0.25 -1.04 16 17 Cl -0.07 -0.82 28.97 -51.86 -1.50 -2.32 16 18 C -0.06 -0.76 9.82 -39.69 -0.39 -1.15 16 19 C -0.17 -2.09 6.27 -104.10 -0.65 -2.75 16 20 C 0.13 1.95 6.75 -38.96 -0.26 1.69 16 21 O -0.30 -4.36 11.07 -21.07 -0.23 -4.60 16 22 C 0.05 0.53 8.00 38.05 0.30 0.83 16 23 C -0.11 -0.96 7.12 -26.52 -0.19 -1.15 16 24 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.39 7.04 8.32 -40.82 -0.34 6.71 16 28 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.10 1.35 8.12 -51.93 -0.42 0.93 16 30 H 0.14 1.71 8.06 -52.48 -0.42 1.28 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -33.84 323.00 -8.47 -42.31 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.09 Total: 2.92 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -2.97 Total: -4.52 kcal Atomic # 7 Polarization: -41.49 SS G_CDS: 0.40 Total: -41.10 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.14 Total: -18.06 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.84 -8.47 -42.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.252 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds