Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99729 * 2 1 4 4 H 1.48498 * 109.47433 * 269.99725 * 3 2 1 5 5 H 1.48497 * 109.47604 * 30.00287 * 3 2 1 6 6 H 1.48505 * 109.46803 * 150.00514 * 3 2 1 7 7 C 1.37878 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99452 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00066 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47295 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00233 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99867 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.46913 * 180.02562 * 13 11 10 15 15 C 1.37973 * 119.87068 * 264.99762 * 14 13 11 16 16 C 1.38343 * 120.33968 * 179.97438 * 15 14 13 17 17 Cl 1.73601 * 120.12986 * 179.85441 * 16 15 14 18 18 C 1.38491 * 119.73841 * 359.83923 * 16 15 14 19 19 C 1.37699 * 119.96545 * 359.97438 * 18 16 15 20 20 C 1.38916 * 120.80048 * 0.34772 * 19 18 16 21 21 O 1.36413 * 111.30835 * 179.11518 * 20 19 18 22 22 C 1.43775 * 109.09736 * 18.73755 * 21 20 19 23 23 C 1.51652 * 132.15828 * 180.38394 * 19 18 16 24 24 H 0.97001 * 119.99920 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47342 * 59.99786 * 9 7 2 26 26 H 1.08999 * 109.47078 * 299.99940 * 9 7 2 27 27 H 0.97006 * 119.99882 * 0.02562 * 10 9 7 28 28 H 1.09000 * 109.47446 * 60.00759 * 13 11 10 29 29 H 1.08996 * 109.47486 * 299.99961 * 13 11 10 30 30 H 1.08004 * 119.82849 * 359.97438 * 15 14 13 31 31 H 1.08001 * 120.01449 * 180.02562 * 18 16 15 32 32 H 1.09002 * 110.74816 * 214.08280 * 22 21 20 33 33 H 1.08999 * 110.74501 * 90.92072 * 22 21 20 34 34 H 1.08998 * 110.93909 * 46.41828 * 23 19 18 35 35 H 1.09001 * 110.93692 * 282.73206 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7538 -4.8833 -0.0033 12 8 0.5613 -5.1050 -0.0035 13 6 2.7331 -6.0287 -0.0038 14 6 1.9796 -7.3339 -0.0050 15 6 1.7258 -7.9820 1.1862 16 6 1.0345 -9.1803 1.1964 17 17 0.7215 -9.9931 2.6981 18 6 0.5929 -9.7287 0.0038 19 6 0.8423 -9.0807 -1.1853 20 6 1.5412 -7.8804 -1.2082 21 8 1.6943 -7.4202 -2.4833 22 6 0.7329 -8.0661 -3.3351 23 6 0.4889 -9.4168 -2.6212 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5574 0.8880 27 1 3.1567 -3.4354 -0.0022 28 1 3.3596 -5.9715 0.8864 29 1 3.3598 -5.9706 -0.8936 30 1 2.0687 -7.5517 2.1156 31 1 0.0524 -10.6637 0.0066 32 1 1.1450 -8.2249 -4.3316 33 1 -0.1880 -7.4853 -3.3878 34 1 -0.5550 -9.7187 -2.7051 35 1 1.1493 -10.1898 -3.0141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427650634.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = -83.486435 kcal Electronic energy + Delta-G solvation = -20691.589245 eV Core-core repulsion = 17293.399965 eV Total energy + Delta-G solvation = -3398.189280 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21451 -40.45218 -38.78335 -37.21802 -36.14106 -34.61731 -34.31125 -32.11219 -30.30188 -29.84235 -28.09781 -24.85939 -24.25499 -23.23235 -22.33651 -21.20811 -18.97285 -18.44389 -17.91526 -17.58267 -17.33784 -16.98308 -16.77784 -16.24157 -15.98243 -15.10373 -14.74235 -14.64038 -14.27946 -14.18254 -14.09556 -13.98352 -13.77221 -13.39498 -12.94081 -12.81875 -12.76766 -12.67794 -12.58920 -12.27536 -12.22055 -11.76413 -11.48718 -11.43798 -10.84615 -10.80566 -9.87192 -9.82483 -9.06692 -8.29346 -6.46189 0.09259 0.11731 1.09708 1.43149 1.45687 1.57012 1.77989 2.18591 2.32203 2.45710 2.80819 3.05504 3.36504 3.47986 3.73896 3.91849 4.07225 4.13719 4.14941 4.31938 4.34165 4.50794 4.58594 4.79305 4.86241 4.92878 5.02312 5.11864 5.12417 5.22720 5.25195 5.42062 5.49012 5.69722 5.84600 6.04588 6.65009 6.91283 7.23292 7.50286 8.82993 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.019976 B = 0.003473 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.336931 B = 8060.240795 C = 8952.817628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.708 5.708 11 C 0.499 3.501 12 O -0.598 6.598 13 C -0.087 4.087 14 C -0.087 4.087 15 C -0.074 4.074 16 C -0.070 4.070 17 Cl -0.061 7.061 18 C -0.063 4.063 19 C -0.171 4.171 20 C 0.103 3.897 21 O -0.322 6.322 22 C 0.040 3.960 23 C -0.096 4.096 24 H 0.269 0.731 25 H -0.016 1.016 26 H -0.013 1.013 27 H 0.409 0.591 28 H 0.137 0.863 29 H 0.120 0.880 30 H 0.150 0.850 31 H 0.159 0.841 32 H 0.138 0.862 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 -22.028 -2.803 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.358 5.358 11 C 0.287 3.713 12 O -0.479 6.479 13 C -0.126 4.126 14 C -0.088 4.088 15 C -0.093 4.093 16 C -0.097 4.097 17 Cl -0.033 7.033 18 C -0.082 4.082 19 C -0.172 4.172 20 C 0.058 3.942 21 O -0.237 6.237 22 C -0.035 4.035 23 C -0.133 4.133 24 H 0.077 0.923 25 H 0.002 0.998 26 H 0.005 0.995 27 H 0.245 0.755 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.168 0.832 31 H 0.177 0.823 32 H 0.156 0.844 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.572 -21.959 -2.774 22.824 hybrid contribution -0.004 1.076 0.183 1.091 sum 5.568 -20.883 -2.591 21.768 Atomic orbital electron populations 1.70146 1.08337 1.28559 1.50027 1.26085 0.95769 1.03960 0.93812 0.85145 0.78526 0.76869 0.78609 1.19604 1.20950 1.17792 1.21631 0.94358 0.90538 1.52855 0.89706 1.18517 0.88718 0.84432 0.93884 1.46183 1.11216 1.05426 1.72957 1.21274 0.89735 0.84780 0.75542 1.90641 1.19441 1.85537 1.52305 1.20597 0.96644 0.87723 1.07630 1.18621 1.03875 0.96415 0.89905 1.20797 0.97404 0.93458 0.97632 1.20652 1.04932 0.96243 0.87855 1.98353 1.94721 1.78557 1.31626 1.20323 0.98683 1.00655 0.88501 1.21018 1.03641 0.95446 0.97098 1.19736 0.95888 0.92840 0.85771 1.86881 1.55319 1.65873 1.15579 1.24166 0.92055 0.91893 0.95344 1.21871 1.05290 0.98163 0.87966 0.92263 0.99840 0.99530 0.75488 0.84549 0.86180 0.83193 0.82306 0.84427 0.91368 0.86895 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 42.58 29.54 68.60 2.03 44.61 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.25 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.56 -30.64 9.28 25.60 0.24 -30.40 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.02 5.43 85.63 0.46 15.49 16 10 N -0.71 -30.66 5.55 -466.79 -2.59 -33.25 16 11 C 0.50 20.70 7.82 87.66 0.69 21.38 16 12 O -0.60 -30.79 16.03 -3.05 -0.05 -30.84 16 13 C -0.09 -2.47 5.79 29.10 0.17 -2.30 16 14 C -0.09 -2.58 4.39 -19.69 -0.09 -2.67 16 15 C -0.07 -1.99 9.43 22.23 0.21 -1.78 16 16 C -0.07 -1.72 6.33 22.35 0.14 -1.57 16 17 Cl -0.06 -1.33 28.97 -2.72 -0.08 -1.41 16 18 C -0.06 -1.39 9.82 22.20 0.22 -1.17 16 19 C -0.17 -4.05 6.27 -19.53 -0.12 -4.17 16 20 C 0.10 3.05 6.75 22.67 0.15 3.20 16 21 O -0.32 -9.42 11.07 -98.30 -1.09 -10.51 16 22 C 0.04 0.79 8.00 72.56 0.58 1.37 16 23 C -0.10 -1.52 7.12 30.73 0.22 -1.31 16 24 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 25 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.41 14.45 8.32 -92.70 -0.77 13.68 16 28 H 0.14 2.87 8.05 -2.39 -0.02 2.85 16 29 H 0.12 3.01 8.12 -2.39 -0.02 2.99 16 30 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 32 H 0.14 1.76 8.14 -2.39 -0.02 1.75 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.89 323.00 2.19 -74.70 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.35 Total: 16.63 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 3.33 Total: -3.29 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -2.30 Total: -89.89 kcal Atomic # 8 Polarization: -40.21 SS G_CDS: -1.14 Total: -41.34 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -76.89 2.19 -74.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427650634.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.786 kcal (2) G-P(sol) polarization free energy of solvation -76.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds