Wall clock time and date at job start Tue Mar 31 2020 06:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86806 * 119.99917 * 2 1 4 4 H 1.48506 * 109.46946 * 269.99972 * 3 2 1 5 5 H 1.48504 * 109.46826 * 29.99440 * 3 2 1 6 6 H 1.48496 * 109.47486 * 149.99421 * 3 2 1 7 7 C 1.38802 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00333 * 180.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81003 * 99.99846 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46853 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00072 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00258 * 179.97438 * 13 11 10 15 15 H 1.09000 * 115.54676 * 9.28425 * 14 13 11 16 16 C 1.52995 * 117.50201 * 223.61537 * 14 13 11 17 17 C 1.52999 * 117.50078 * 154.98706 * 14 13 11 18 18 H 1.08993 * 117.49765 * 0.02562 * 17 14 13 19 19 C 1.50697 * 117.49855 * 214.98206 * 17 14 13 20 20 C 1.38224 * 120.01638 * 300.00071 * 19 17 14 21 21 C 1.38217 * 120.02541 * 179.97438 * 20 19 17 22 22 C 1.38263 * 120.05349 * 0.02562 * 21 20 19 23 23 C 1.38169 * 120.02948 * 359.97438 * 22 21 20 24 24 C 1.38443 * 120.01081 * 119.72586 * 19 17 14 25 25 F 1.35095 * 120.02401 * 359.97438 * 24 19 17 26 26 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46793 * 60.00091 * 10 9 7 28 28 H 1.09000 * 109.47087 * 299.99827 * 10 9 7 29 29 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 30 30 H 1.08997 * 117.50241 * 359.97438 * 16 14 13 31 31 H 1.08996 * 117.50051 * 144.99872 * 16 14 13 32 32 H 1.07996 * 119.98329 * 359.97438 * 20 19 17 33 33 H 1.08004 * 119.97186 * 180.02562 * 21 20 19 34 34 H 1.08003 * 119.98449 * 179.97438 * 22 21 20 35 35 H 1.07996 * 120.02008 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4404 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0030 12 8 0.7913 -5.5023 0.0030 13 7 2.8444 -6.3430 0.0037 14 6 2.3308 -7.7150 0.0051 15 1 1.2570 -7.8151 -0.1532 16 6 3.0035 -8.7203 0.9420 17 6 3.2347 -8.8083 -0.5680 18 1 4.2117 -8.5069 -0.9456 19 6 2.5724 -9.9415 -1.3084 20 6 1.6519 -10.7452 -0.6623 21 6 1.0439 -11.7842 -1.3414 22 6 1.3560 -12.0214 -2.6672 23 6 2.2759 -11.2195 -3.3152 24 6 2.8815 -10.1746 -2.6376 25 9 3.7765 -9.3860 -3.2717 26 1 -0.4850 0.8400 -0.0004 27 1 3.1239 -3.7308 0.8925 28 1 3.1254 -3.7316 -0.8875 29 1 3.8012 -6.1834 0.0040 30 1 3.8285 -8.3610 1.5570 31 1 2.3723 -9.4817 1.4000 32 1 1.4076 -10.5610 0.3734 33 1 0.3244 -12.4114 -0.8358 34 1 0.8806 -12.8339 -3.1967 35 1 2.5199 -11.4052 -4.3507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458042283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:34 Heat of formation + Delta-G solvation = -56.285079 kcal Electronic energy + Delta-G solvation = -19778.877246 eV Core-core repulsion = 16396.284001 eV Total energy + Delta-G solvation = -3382.593245 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.90994 -41.03680 -40.07757 -38.04455 -34.60116 -34.40934 -31.68715 -31.39430 -30.30670 -27.67947 -25.15481 -23.71302 -23.14675 -21.84808 -21.51619 -19.87093 -18.78285 -17.97272 -17.75449 -17.07177 -16.88582 -16.75304 -16.58272 -16.42819 -15.95233 -15.18499 -15.09876 -14.89184 -14.51040 -14.20257 -13.92005 -13.74066 -13.45632 -13.17756 -13.03699 -12.90120 -12.63300 -12.53222 -12.33505 -12.14529 -11.75594 -11.55820 -11.15011 -11.04270 -10.29742 -10.15883 -9.80386 -9.38468 -8.68044 -8.35430 -6.13820 0.14104 0.24276 1.24348 1.42283 1.45241 1.50134 1.56265 2.13928 2.26595 2.53369 2.98213 2.99064 3.29143 3.30599 3.54100 3.65412 3.74296 3.88336 3.94942 4.08087 4.19852 4.27957 4.37532 4.43044 4.47955 4.70665 4.87988 4.90811 5.04460 5.11042 5.22633 5.39541 5.41250 5.44244 5.49354 5.94986 6.19186 6.42029 7.05801 7.17189 8.73890 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031903 B = 0.002645 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.449280 B =10583.838632 C =10711.408122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.150 6.150 10 C -0.129 4.129 11 C 0.538 3.462 12 O -0.562 6.562 13 N -0.686 5.686 14 C 0.076 3.924 15 H 0.116 0.884 16 C -0.152 4.152 17 C -0.122 4.122 18 H 0.120 0.880 19 C -0.100 4.100 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.095 4.095 23 C -0.160 4.160 24 C 0.073 3.927 25 F -0.152 7.152 26 H 0.271 0.729 27 H 0.114 0.886 28 H 0.109 0.891 29 H 0.418 0.582 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 -25.917 -1.498 27.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.077 5.923 10 C -0.280 4.280 11 C 0.325 3.675 12 O -0.440 6.440 13 N -0.338 5.338 14 C -0.031 4.031 15 H 0.134 0.866 16 C -0.190 4.190 17 C -0.142 4.142 18 H 0.138 0.862 19 C -0.101 4.101 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.113 4.113 23 C -0.179 4.179 24 C 0.054 3.946 25 F -0.131 7.131 26 H 0.080 0.920 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.255 0.745 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.071 -26.104 -1.522 27.088 hybrid contribution 2.177 1.640 -0.395 2.754 sum 9.248 -24.465 -1.917 26.225 Atomic orbital electron populations 1.70179 1.07982 1.28654 1.47970 1.26143 0.95984 1.03357 0.93716 0.84940 0.78209 0.75961 0.78779 1.19366 1.20232 1.18149 1.23204 0.95367 0.91943 1.58923 0.89867 1.85582 1.10407 0.99215 1.97061 1.23369 1.03700 0.93993 1.06980 1.20093 0.86201 0.86571 0.74670 1.90683 1.17366 1.85991 1.49980 1.45139 1.10135 1.03758 1.74760 1.21741 0.97465 0.78362 1.05494 0.86643 1.23783 1.03741 1.00546 0.90889 1.21427 1.00139 0.95807 0.96809 0.86170 1.19298 1.00156 0.98208 0.92409 1.21284 0.94694 0.94430 1.01357 1.21608 1.00033 0.97739 0.94894 1.21422 0.95770 0.99108 0.94963 1.21435 0.99210 0.95428 1.01834 1.17906 0.92650 0.92792 0.91278 1.91449 1.66035 1.73447 1.82163 0.91955 0.86808 0.87237 0.74470 0.86010 0.85624 0.83214 0.82449 0.82143 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.31 13.22 21.65 0.29 -56.03 16 2 C 0.01 0.73 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.55 -31.39 9.50 67.96 0.65 -30.74 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.56 16 10 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 11 C 0.54 20.31 7.85 87.66 0.69 21.00 16 12 O -0.56 -26.54 15.43 -3.03 -0.05 -26.59 16 13 N -0.69 -18.11 5.57 -442.55 -2.46 -20.57 16 14 C 0.08 1.80 6.06 44.99 0.27 2.07 16 15 H 0.12 3.36 7.40 -2.39 -0.02 3.35 16 16 C -0.15 -2.32 9.78 30.59 0.30 -2.02 16 17 C -0.12 -2.32 5.72 -11.54 -0.07 -2.39 16 18 H 0.12 2.22 7.87 -2.39 -0.02 2.20 16 19 C -0.10 -1.97 5.62 -19.82 -0.11 -2.08 16 20 C -0.10 -1.53 9.30 22.26 0.21 -1.33 16 21 C -0.12 -1.53 10.04 22.27 0.22 -1.30 16 22 C -0.09 -1.17 10.04 22.26 0.22 -0.94 16 23 C -0.16 -2.66 10.03 22.31 0.22 -2.43 16 24 C 0.07 1.57 7.25 22.38 0.16 1.73 16 25 F -0.15 -3.78 16.62 44.97 0.75 -3.03 16 26 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 27 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 28 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 29 H 0.42 8.05 8.83 -92.71 -0.82 7.24 16 30 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.13 1.47 6.18 -2.39 -0.01 1.46 16 32 H 0.15 1.72 6.02 -2.91 -0.02 1.71 16 33 H 0.16 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -78.47 326.13 3.37 -75.10 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.31 Total: 16.84 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 3.67 Total: -21.98 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.18 Total: -76.60 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.75 Total: -3.03 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.56 kcal Total: -78.47 3.37 -75.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458042283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.815 kcal (2) G-P(sol) polarization free energy of solvation -78.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds