Wall clock time and date at job start Tue Mar 31 2020 07:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46794 * 139.49650 * 3 2 1 5 5 C 1.37097 * 120.00097 * 263.92471 * 4 3 2 6 6 H 1.07995 * 119.99783 * 199.75133 * 5 4 3 7 7 C 1.38943 * 120.00175 * 19.75571 * 5 4 3 8 8 N 1.31412 * 120.00143 * 21.74322 * 7 5 4 9 9 Si 1.86800 * 120.00114 * 201.74503 * 7 5 4 10 10 H 1.48497 * 109.47007 * 60.00186 * 9 7 5 11 11 H 1.48508 * 109.47018 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47189 * 299.99962 * 9 7 5 13 13 C 1.34776 * 119.99555 * 83.93246 * 4 3 2 14 14 O 1.21297 * 119.99514 * 179.97438 * 13 4 3 15 15 C 1.50698 * 120.00091 * 359.97438 * 13 4 3 16 16 O 1.42910 * 109.46865 * 180.02562 * 15 13 4 17 17 C 1.36002 * 116.99579 * 179.97438 * 16 15 13 18 18 C 1.38638 * 120.04119 * 0.30009 * 17 16 15 19 19 C 1.38187 * 119.99193 * 180.26997 * 18 17 16 20 20 C 1.38457 * 120.06929 * 359.42978 * 19 18 17 21 21 F 1.35099 * 119.95987 * 180.29669 * 20 19 18 22 22 C 1.38431 * 120.07350 * 0.27437 * 20 19 18 23 23 C 1.38335 * 120.00998 * 0.02562 * 22 20 19 24 24 F 1.35104 * 120.03539 * 179.97438 * 23 22 20 25 25 H 4.40639 * 5.51368 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47328 * 19.49779 * 3 2 1 27 27 H 1.08991 * 109.47241 * 259.49928 * 3 2 1 28 28 H 0.96993 * 120.00611 * 180.02562 * 8 7 5 29 29 H 1.09000 * 109.47240 * 60.00775 * 15 13 4 30 30 H 1.09006 * 109.47466 * 299.99966 * 15 13 4 31 31 H 1.08000 * 120.00005 * 359.97438 * 18 17 16 32 32 H 1.08002 * 119.96097 * 179.70599 * 19 18 17 33 33 H 1.08003 * 119.99401 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.0511 -0.8971 5 6 3.4809 0.7441 -2.1874 6 1 4.1237 1.4080 -2.7462 7 6 3.0056 -0.4212 -2.7761 8 7 1.9249 -1.0019 -2.3051 9 14 3.9027 -1.1626 -4.2373 10 1 5.2941 -1.5011 -3.8440 11 1 3.1994 -2.3946 -4.6768 12 1 3.9280 -0.1820 -5.3521 13 6 3.2415 2.3194 -0.4539 14 8 3.6458 3.1890 -1.1965 15 6 2.8596 2.6569 0.9643 16 8 3.0598 4.0535 1.1920 17 6 2.7600 4.5261 2.4315 18 6 2.2895 3.6624 3.4085 19 6 1.9799 4.1447 4.6660 20 6 2.1503 5.4880 4.9550 21 9 1.8526 5.9561 6.1869 22 6 2.6257 6.3518 3.9834 23 6 2.9307 5.8735 2.7217 24 9 3.3943 6.7162 1.7728 25 1 -1.0501 -0.0002 0.0004 26 1 3.0098 -0.9679 -0.3430 27 1 3.0093 0.1881 1.0104 28 1 1.5933 -1.8156 -2.7158 29 1 3.4794 2.0836 1.6538 30 1 1.8105 2.4093 1.1269 31 1 2.1604 2.6136 3.1855 32 1 1.6089 3.4723 5.4253 33 1 2.7577 7.3995 4.2101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490963220.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:21 Heat of formation + Delta-G solvation = -58.269109 kcal Electronic energy + Delta-G solvation = -22743.577956 eV Core-core repulsion = 18794.685501 eV Total energy + Delta-G solvation = -3948.892455 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.06306 -48.83448 -40.12709 -38.64263 -37.08159 -35.21930 -32.30542 -31.38713 -31.09375 -29.93831 -28.04336 -26.49831 -24.61364 -23.22474 -22.54558 -19.53882 -18.66368 -18.07156 -17.75311 -17.32191 -16.78130 -16.36584 -16.06907 -15.70367 -15.61848 -15.16311 -14.99384 -14.72098 -14.48696 -14.24567 -13.94740 -13.68651 -12.86200 -12.70641 -12.46550 -12.36984 -12.09896 -11.92206 -11.69159 -11.34610 -11.06118 -10.89056 -10.61383 -10.41728 -9.52090 -9.37409 -9.27898 -9.06413 -8.57573 -8.18677 -8.00117 -6.44675 -3.99669 0.77538 0.90689 2.88695 3.10594 3.19906 3.20599 3.25045 3.51869 3.74165 3.80803 3.87806 4.10017 4.21956 4.39887 4.61348 4.80331 4.85845 4.91761 5.17338 5.26606 5.31198 5.41148 5.58931 5.62628 5.74758 5.83094 5.86368 6.08476 6.42900 6.54414 6.86818 7.22423 7.46282 7.90012 8.28544 8.65720 8.98770 9.18256 9.71353 10.55856 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.027163 B = 0.003711 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.554546 B = 7544.240927 C = 8324.187437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.124 4.124 3 C 0.229 3.771 4 N -0.432 5.432 5 C -0.319 4.319 6 H 0.106 0.894 7 C 0.035 3.965 8 N -0.859 5.859 9 Si 0.924 3.076 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.450 3.550 14 O -0.557 6.557 15 C 0.046 3.954 16 O -0.273 6.273 17 C 0.100 3.900 18 C -0.159 4.159 19 C -0.118 4.118 20 C 0.080 3.920 21 F -0.136 7.136 22 C -0.153 4.153 23 C 0.098 3.902 24 F -0.121 7.121 25 H 0.201 0.799 26 H 0.111 0.889 27 H 0.062 0.938 28 H 0.271 0.729 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.151 0.849 32 H 0.145 0.855 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.298 4.064 14.462 15.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.125 4.125 3 C 0.106 3.894 4 N -0.152 5.152 5 C -0.445 4.445 6 H 0.124 0.876 7 C -0.170 4.170 8 N -0.496 5.496 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.237 3.763 14 O -0.439 6.439 15 C -0.032 4.032 16 O -0.184 6.184 17 C 0.052 3.948 18 C -0.178 4.178 19 C -0.137 4.137 20 C 0.060 3.940 21 F -0.115 7.115 22 C -0.172 4.172 23 C 0.078 3.922 24 F -0.099 7.099 25 H 0.218 0.782 26 H 0.129 0.871 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.162 0.838 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.091 4.470 13.839 14.584 hybrid contribution -0.180 -0.569 -0.576 0.830 sum -1.271 3.900 13.263 13.883 Atomic orbital electron populations 1.24327 0.95399 1.02464 1.04577 1.23110 0.94310 0.98490 0.96626 1.18280 0.84453 0.95025 0.91657 1.43591 1.56147 1.03949 1.11562 1.19626 1.28562 1.07178 0.89170 0.87640 1.25324 0.94870 0.97829 0.98995 1.70066 1.17704 1.19765 1.42019 0.86026 0.79512 0.78349 0.81064 1.19740 1.20961 1.19705 1.19433 0.85871 0.83339 0.87635 1.90596 1.49659 1.46222 1.57423 1.22789 1.02067 0.79437 0.98949 1.86309 1.80476 1.25890 1.25746 1.19224 0.97110 0.91964 0.86496 1.21101 1.03369 1.00748 0.92577 1.20981 1.01244 0.93843 0.97670 1.17100 1.03852 0.92258 0.80769 1.91505 1.91265 1.89103 1.39634 1.20840 1.03524 1.01675 0.91194 1.16548 1.03714 0.85182 0.86802 1.91563 1.86037 1.69665 1.62627 0.78237 0.87082 0.92005 0.91894 0.90130 0.89686 0.83177 0.83757 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.75 19.25 29.55 0.57 -4.18 16 2 C -0.12 -2.54 10.75 -37.12 -0.40 -2.94 16 3 C 0.23 4.62 4.91 -6.83 -0.03 4.58 16 4 N -0.43 -10.39 2.60 -117.94 -0.31 -10.69 16 5 C -0.32 -8.44 9.28 -14.94 -0.14 -8.58 16 6 H 0.11 2.96 7.42 -52.49 -0.39 2.57 16 7 C 0.04 0.88 4.83 -17.47 -0.08 0.79 16 8 N -0.86 -21.51 9.59 55.50 0.53 -20.98 16 9 Si 0.92 19.72 29.61 -169.99 -5.03 14.69 16 10 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.45 10.74 7.64 -10.99 -0.08 10.65 16 14 O -0.56 -15.72 16.17 -14.36 -0.23 -15.96 16 15 C 0.05 0.82 3.83 36.00 0.14 0.96 16 16 O -0.27 -5.19 9.54 -39.65 -0.38 -5.57 16 17 C 0.10 1.51 6.69 -39.19 -0.26 1.25 16 18 C -0.16 -1.86 9.04 -39.45 -0.36 -2.21 16 19 C -0.12 -1.19 10.02 -39.52 -0.40 -1.59 16 20 C 0.08 0.87 7.30 -39.43 -0.29 0.58 16 21 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 22 C -0.15 -1.74 10.00 -39.47 -0.39 -2.14 16 23 C 0.10 1.40 7.31 -39.31 -0.29 1.11 16 24 F -0.12 -1.96 17.11 2.25 0.04 -1.92 16 25 H 0.20 3.09 7.80 -54.08 -0.42 2.67 16 26 H 0.11 2.36 6.60 -51.93 -0.34 2.02 16 27 H 0.06 0.97 6.69 -51.93 -0.35 0.62 16 28 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 29 H 0.08 1.16 6.92 -51.93 -0.36 0.80 16 30 H 0.09 1.39 7.02 -51.93 -0.36 1.03 16 31 H 0.15 1.49 6.30 -52.49 -0.33 1.16 16 32 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -31.44 307.22 -5.26 -36.70 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -2.54 Total: 2.26 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -2.02 Total: -1.72 kcal Atomic # 7 Polarization: -31.89 SS G_CDS: 0.23 Total: -31.67 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.61 Total: -21.52 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.03 Total: 14.69 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.44 -5.26 -36.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490963220.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.569 kcal (2) G-P(sol) polarization free energy of solvation -31.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds