Wall clock time and date at job start Tue Mar 31 2020 07:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47021 * 31.79499 * 3 2 1 5 5 C 1.37098 * 120.00017 * 263.88564 * 4 3 2 6 6 H 1.08000 * 120.00195 * 200.35765 * 5 4 3 7 7 C 1.38949 * 119.99951 * 20.36057 * 5 4 3 8 8 N 1.31410 * 120.00292 * 21.29257 * 7 5 4 9 9 Si 1.86797 * 120.00002 * 201.29751 * 7 5 4 10 10 H 1.48507 * 109.47177 * 89.99868 * 9 7 5 11 11 H 1.48501 * 109.47241 * 210.00079 * 9 7 5 12 12 H 1.48503 * 109.47029 * 329.99914 * 9 7 5 13 13 C 1.34779 * 119.99768 * 83.88796 * 4 3 2 14 14 O 1.21287 * 120.00091 * 0.02562 * 13 4 3 15 15 C 1.50704 * 119.99786 * 179.97438 * 13 4 3 16 16 O 1.42897 * 109.46977 * 179.97438 * 15 13 4 17 17 C 1.35900 * 116.99808 * 179.97438 * 16 15 13 18 18 C 1.38705 * 120.03060 * 359.73027 * 17 16 15 19 19 C 1.38374 * 119.97405 * 180.32009 * 18 17 16 20 20 F 1.35101 * 119.99117 * 179.97438 * 19 18 17 21 21 C 1.38459 * 120.02847 * 359.92980 * 19 18 17 22 22 C 1.38463 * 120.05712 * 0.04293 * 21 19 18 23 23 F 1.35102 * 119.98170 * 179.97438 * 22 21 19 24 24 C 1.38377 * 120.02948 * 0.02562 * 22 21 19 25 25 H 4.40643 * 5.51370 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47281 * 271.79633 * 3 2 1 27 27 H 1.08999 * 109.47202 * 151.79321 * 3 2 1 28 28 H 0.96995 * 120.00203 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46799 * 60.00176 * 15 13 4 30 30 H 1.08999 * 109.47408 * 300.00438 * 15 13 4 31 31 H 1.08008 * 120.01300 * 0.24373 * 18 17 16 32 32 H 1.07996 * 119.97367 * 180.02562 * 21 19 18 33 33 H 1.08000 * 120.01488 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1731 -0.7278 5 6 3.4831 -2.3084 -0.0427 6 1 4.1345 -3.0376 -0.5014 7 6 2.9979 -2.5211 1.2419 8 7 1.9149 -1.8967 1.6469 9 14 3.8852 -3.6944 2.3931 10 1 4.9067 -2.9474 3.1703 11 1 2.9058 -4.3088 3.3250 12 1 4.5486 -4.7597 1.5992 13 6 3.2423 -1.1367 -2.0708 14 8 2.9347 -0.1322 -2.6768 15 6 3.7457 -2.3440 -2.8193 16 8 3.7684 -2.0607 -4.2198 17 6 4.2009 -3.0519 -5.0428 18 6 4.6005 -4.2697 -4.5124 19 6 5.0469 -5.2758 -5.3509 20 9 5.4367 -6.4619 -4.8346 21 6 5.0936 -5.0679 -6.7190 22 6 4.6945 -3.8529 -7.2498 23 9 4.7412 -3.6515 -8.5849 24 6 4.2490 -2.8446 -6.4134 25 1 -1.0498 -0.0002 -0.0003 26 1 3.0094 -0.0314 1.0272 27 1 3.0090 0.9064 -0.4857 28 1 1.5764 -2.0449 2.5437 29 1 3.0848 -3.1900 -2.6308 30 1 4.7529 -2.5873 -2.4811 31 1 4.5643 -4.4321 -3.4452 32 1 5.4418 -5.8539 -7.3726 33 1 3.9382 -1.8969 -6.8276 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491381385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:24 Heat of formation + Delta-G solvation = -64.434426 kcal Electronic energy + Delta-G solvation = -22597.281447 eV Core-core repulsion = 18648.121644 eV Total energy + Delta-G solvation = -3949.159803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.14525 -49.10594 -40.15341 -38.66351 -36.93985 -35.15331 -32.08703 -31.60383 -30.68128 -30.16706 -28.33625 -26.12612 -24.64551 -23.01358 -22.58075 -19.57784 -18.89015 -18.13954 -17.35111 -16.81316 -16.58783 -16.30246 -16.28156 -15.83512 -15.62228 -15.48692 -15.41255 -14.56109 -14.49345 -14.39285 -13.96670 -13.77380 -12.78195 -12.67775 -12.32724 -12.09911 -11.96444 -11.82962 -11.72937 -11.47468 -11.20618 -10.79737 -10.67250 -10.56796 -9.49935 -9.42500 -8.94008 -8.83899 -8.62581 -8.45276 -8.09831 -6.55903 -4.18625 0.83161 1.01206 2.86254 2.98439 3.11019 3.12090 3.28155 3.52984 3.75257 3.90195 4.01258 4.19684 4.28843 4.70299 4.73306 4.78361 4.81892 4.91376 5.11568 5.49255 5.57354 5.65143 5.70077 5.81898 5.87477 5.91993 6.03885 6.49366 6.54178 6.68252 7.07715 7.14127 7.33476 7.45790 8.08005 8.82542 8.91054 9.18068 9.59824 10.42340 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.004249 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.824096 B = 6588.393840 C = 7930.096640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.105 4.105 3 C 0.246 3.754 4 N -0.430 5.430 5 C -0.362 4.362 6 H 0.100 0.900 7 C 0.045 3.955 8 N -0.840 5.840 9 Si 0.919 3.081 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.268 1.268 13 C 0.462 3.538 14 O -0.582 6.582 15 C 0.057 3.943 16 O -0.278 6.278 17 C 0.202 3.798 18 C -0.260 4.260 19 C 0.172 3.828 20 F -0.129 7.129 21 C -0.239 4.239 22 C 0.168 3.832 23 F -0.128 7.128 24 C -0.202 4.202 25 H 0.198 0.802 26 H 0.103 0.897 27 H 0.070 0.930 28 H 0.273 0.727 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.146 0.854 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 -5.286 -8.419 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.107 4.107 3 C 0.124 3.876 4 N -0.149 5.149 5 C -0.489 4.489 6 H 0.117 0.883 7 C -0.163 4.163 8 N -0.475 5.475 9 Si 0.745 3.255 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.249 3.751 14 O -0.466 6.466 15 C -0.021 4.021 16 O -0.188 6.188 17 C 0.153 3.847 18 C -0.280 4.280 19 C 0.152 3.848 20 F -0.107 7.107 21 C -0.259 4.259 22 C 0.148 3.852 23 F -0.107 7.107 24 C -0.222 4.222 25 H 0.215 0.785 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.170 0.830 32 H 0.164 0.836 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.801 -4.603 -8.572 10.850 hybrid contribution 0.186 -1.250 0.870 1.535 sum 4.987 -5.853 -7.701 10.883 Atomic orbital electron populations 1.24198 0.95329 1.03899 1.04847 1.23026 0.94272 0.96890 0.96512 1.18020 0.84398 0.87498 0.97679 1.43539 1.55670 1.12683 1.03032 1.19559 1.29932 1.00334 0.99044 0.88258 1.25315 0.94473 0.97997 0.98545 1.70109 1.16816 1.41394 1.19157 0.86064 0.79261 0.80053 0.80149 1.19992 1.20825 1.19293 1.19455 0.84326 0.88542 0.82729 1.90608 1.54922 1.33629 1.67477 1.22602 1.02752 0.99609 0.77110 1.86211 1.78640 1.35781 1.18181 1.18379 0.89731 0.86583 0.89976 1.21383 1.10486 0.93927 1.02164 1.16878 0.96096 0.81194 0.90627 1.91537 1.88144 1.43798 1.87258 1.20797 1.11605 0.99008 0.94518 1.16741 0.98038 0.93129 0.77249 1.91533 1.93894 1.95358 1.29883 1.20306 1.09548 1.01573 0.90754 0.78462 0.87894 0.91155 0.91586 0.89003 0.89538 0.82988 0.83576 0.83068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.84 19.25 29.55 0.57 -5.27 16 2 C -0.11 -2.52 11.42 -37.12 -0.42 -2.95 16 3 C 0.25 5.70 5.06 -6.83 -0.03 5.66 16 4 N -0.43 -10.16 2.60 -117.93 -0.31 -10.46 16 5 C -0.36 -8.33 9.06 -14.93 -0.14 -8.47 16 6 H 0.10 2.09 6.61 -52.49 -0.35 1.74 16 7 C 0.05 1.04 4.84 -17.47 -0.08 0.96 16 8 N -0.84 -20.51 9.58 55.50 0.53 -19.98 16 9 Si 0.92 17.90 29.60 -169.99 -5.03 12.87 16 10 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 11 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 12 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 13 C 0.46 10.73 7.64 -10.98 -0.08 10.64 16 14 O -0.58 -15.19 16.18 -14.36 -0.23 -15.42 16 15 C 0.06 1.06 3.71 36.01 0.13 1.19 16 16 O -0.28 -5.09 9.67 -39.33 -0.38 -5.47 16 17 C 0.20 3.03 6.68 -39.24 -0.26 2.77 16 18 C -0.26 -3.54 9.01 -39.36 -0.35 -3.89 16 19 C 0.17 2.16 7.30 -39.45 -0.29 1.88 16 20 F -0.13 -1.64 17.27 2.25 0.04 -1.60 16 21 C -0.24 -2.75 10.00 -39.42 -0.39 -3.14 16 22 C 0.17 2.05 7.30 -39.45 -0.29 1.76 16 23 F -0.13 -1.53 17.27 2.25 0.04 -1.49 16 24 C -0.20 -2.71 9.96 -39.36 -0.39 -3.10 16 25 H 0.20 3.57 7.80 -54.10 -0.42 3.15 16 26 H 0.10 2.36 6.63 -51.93 -0.34 2.02 16 27 H 0.07 1.55 7.61 -51.93 -0.40 1.16 16 28 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 29 H 0.09 1.62 7.62 -51.93 -0.40 1.22 16 30 H 0.09 1.41 7.18 -51.93 -0.37 1.04 16 31 H 0.15 1.97 6.30 -52.48 -0.33 1.64 16 32 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -28.00 308.91 -5.31 -33.31 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -2.59 Total: 5.55 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -2.04 Total: -1.96 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.23 Total: -30.44 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.61 Total: -20.89 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.00 -5.31 -33.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491381385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.127 kcal (2) G-P(sol) polarization free energy of solvation -27.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds