Wall clock time and date at job start Tue Mar 31 2020 07:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47021 * 31.79499 * 3 2 1 5 5 C 1.37098 * 120.00017 * 263.88564 * 4 3 2 6 6 H 1.08000 * 120.00195 * 200.35765 * 5 4 3 7 7 C 1.38949 * 119.99951 * 20.36057 * 5 4 3 8 8 N 1.31410 * 120.00292 * 21.29257 * 7 5 4 9 9 Si 1.86797 * 120.00002 * 201.29751 * 7 5 4 10 10 H 1.48507 * 109.47177 * 89.99868 * 9 7 5 11 11 H 1.48501 * 109.47241 * 210.00079 * 9 7 5 12 12 H 1.48503 * 109.47029 * 329.99914 * 9 7 5 13 13 C 1.34779 * 119.99768 * 83.88796 * 4 3 2 14 14 O 1.21287 * 120.00091 * 0.02562 * 13 4 3 15 15 C 1.50704 * 119.99786 * 179.97438 * 13 4 3 16 16 O 1.42897 * 109.46977 * 179.97438 * 15 13 4 17 17 C 1.35900 * 116.99808 * 179.97438 * 16 15 13 18 18 C 1.38705 * 120.03060 * 359.73027 * 17 16 15 19 19 C 1.38374 * 119.97405 * 180.32009 * 18 17 16 20 20 F 1.35101 * 119.99117 * 179.97438 * 19 18 17 21 21 C 1.38459 * 120.02847 * 359.92980 * 19 18 17 22 22 C 1.38463 * 120.05712 * 0.04293 * 21 19 18 23 23 F 1.35102 * 119.98170 * 179.97438 * 22 21 19 24 24 C 1.38377 * 120.02948 * 0.02562 * 22 21 19 25 25 H 4.40643 * 5.51370 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47281 * 271.79633 * 3 2 1 27 27 H 1.08999 * 109.47202 * 151.79321 * 3 2 1 28 28 H 0.96995 * 120.00203 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46799 * 60.00176 * 15 13 4 30 30 H 1.08999 * 109.47408 * 300.00438 * 15 13 4 31 31 H 1.08008 * 120.01300 * 0.24373 * 18 17 16 32 32 H 1.07996 * 119.97367 * 180.02562 * 21 19 18 33 33 H 1.08000 * 120.01488 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.1731 -0.7278 5 6 3.4831 -2.3084 -0.0427 6 1 4.1345 -3.0376 -0.5014 7 6 2.9979 -2.5211 1.2419 8 7 1.9149 -1.8967 1.6469 9 14 3.8852 -3.6944 2.3931 10 1 4.9067 -2.9474 3.1703 11 1 2.9058 -4.3088 3.3250 12 1 4.5486 -4.7597 1.5992 13 6 3.2423 -1.1367 -2.0708 14 8 2.9347 -0.1322 -2.6768 15 6 3.7457 -2.3440 -2.8193 16 8 3.7684 -2.0607 -4.2198 17 6 4.2009 -3.0519 -5.0428 18 6 4.6005 -4.2697 -4.5124 19 6 5.0469 -5.2758 -5.3509 20 9 5.4367 -6.4619 -4.8346 21 6 5.0936 -5.0679 -6.7190 22 6 4.6945 -3.8529 -7.2498 23 9 4.7412 -3.6515 -8.5849 24 6 4.2490 -2.8446 -6.4134 25 1 -1.0498 -0.0002 -0.0003 26 1 3.0094 -0.0314 1.0272 27 1 3.0090 0.9064 -0.4857 28 1 1.5764 -2.0449 2.5437 29 1 3.0848 -3.1900 -2.6308 30 1 4.7529 -2.5873 -2.4811 31 1 4.5643 -4.4321 -3.4452 32 1 5.4418 -5.8539 -7.3726 33 1 3.9382 -1.8969 -6.8276 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491381385.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:23 Heat of formation + Delta-G solvation = -77.849156 kcal Electronic energy + Delta-G solvation = -22597.863153 eV Core-core repulsion = 18648.121644 eV Total energy + Delta-G solvation = -3949.741510 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.081 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.11128 -50.08864 -41.44185 -40.29421 -38.16069 -36.95771 -33.85928 -33.38704 -31.79636 -31.23727 -29.84469 -27.81810 -26.36100 -24.05385 -23.70791 -21.28946 -20.09660 -19.71021 -18.79034 -18.11919 -18.06059 -17.46633 -17.37324 -17.13694 -16.85563 -16.71218 -16.38565 -16.23733 -16.06937 -15.62086 -15.39488 -15.13013 -14.32058 -14.30191 -13.89529 -13.51238 -13.30284 -13.06971 -12.94421 -12.81020 -12.75367 -12.49935 -12.08672 -11.91306 -11.25376 -11.23877 -10.64272 -10.43225 -9.94947 -9.91873 -9.54282 -8.31145 -5.99847 -0.18501 -0.01606 1.38714 1.49642 1.56066 1.63092 1.83855 2.17358 2.25351 2.32416 2.40649 2.78399 3.05248 3.12321 3.33644 3.71240 3.75784 3.84159 3.88888 3.98374 4.15152 4.17921 4.29383 4.69610 4.72173 4.82513 4.85298 4.90421 4.98883 5.36936 5.39396 5.51300 5.68422 6.09855 6.31817 7.04292 7.12488 7.40505 7.82246 8.67390 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.017186 B = 0.004249 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.824096 B = 6588.393840 C = 7930.096640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.150 4.150 3 C 0.245 3.755 4 N -0.437 5.437 5 C -0.376 4.376 6 H 0.119 0.881 7 C 0.006 3.994 8 N -0.869 5.869 9 Si 0.987 3.013 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.255 1.255 13 C 0.446 3.554 14 O -0.621 6.621 15 C 0.070 3.930 16 O -0.304 6.304 17 C 0.180 3.820 18 C -0.258 4.258 19 C 0.169 3.831 20 F -0.128 7.128 21 C -0.221 4.221 22 C 0.171 3.829 23 F -0.125 7.125 24 C -0.204 4.204 25 H 0.234 0.766 26 H 0.098 0.902 27 H 0.069 0.931 28 H 0.272 0.728 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -7.340 -8.917 12.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.151 4.151 3 C 0.123 3.877 4 N -0.155 5.155 5 C -0.502 4.502 6 H 0.137 0.863 7 C -0.199 4.199 8 N -0.504 5.504 9 Si 0.810 3.190 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.179 1.179 13 C 0.236 3.764 14 O -0.509 6.509 15 C -0.007 4.007 16 O -0.216 6.216 17 C 0.133 3.867 18 C -0.277 4.277 19 C 0.150 3.850 20 F -0.106 7.106 21 C -0.240 4.240 22 C 0.151 3.849 23 F -0.103 7.103 24 C -0.224 4.224 25 H 0.250 0.750 26 H 0.116 0.884 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.175 0.825 32 H 0.191 0.809 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.587 -6.675 -9.081 12.579 hybrid contribution -0.088 -0.616 0.946 1.132 sum 5.499 -7.291 -8.135 12.230 Atomic orbital electron populations 1.25109 0.96378 1.02303 1.03239 1.23454 0.95155 0.98454 0.98062 1.17972 0.84629 0.87735 0.97363 1.43777 1.55273 1.12935 1.03517 1.20046 1.30242 1.00515 0.99426 0.86319 1.26136 0.94746 0.99452 0.99591 1.70228 1.18068 1.42834 1.19288 0.85023 0.77767 0.78256 0.77918 1.19925 1.21600 1.17881 1.20241 0.83962 0.89515 0.82717 1.90563 1.56667 1.35455 1.68198 1.22382 1.03830 0.97092 0.77400 1.86153 1.79925 1.37478 1.18005 1.18469 0.91509 0.86706 0.90052 1.21428 1.10038 0.93602 1.02677 1.16863 0.96241 0.81013 0.90923 1.91546 1.88122 1.43608 1.87315 1.21042 1.09529 0.99090 0.94377 1.16675 0.97913 0.93053 0.77238 1.91548 1.93836 1.95353 1.29550 1.20414 1.09323 1.02184 0.90450 0.74964 0.88415 0.91303 0.91777 0.88142 0.87254 0.82485 0.80887 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -11.05 19.25 74.32 1.43 -9.62 16 2 C -0.15 -7.28 11.42 31.13 0.36 -6.92 16 3 C 0.25 11.69 5.06 84.57 0.43 12.12 16 4 N -0.44 -20.86 2.60 -645.40 -1.68 -22.53 16 5 C -0.38 -17.07 9.06 84.04 0.76 -16.31 16 6 H 0.12 4.78 6.61 -2.91 -0.02 4.76 16 7 C 0.01 0.29 4.84 84.93 0.41 0.70 16 8 N -0.87 -42.47 9.58 21.66 0.21 -42.26 16 9 Si 0.99 35.83 29.60 68.60 2.03 37.86 16 10 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 11 H -0.29 -10.81 7.11 99.48 0.71 -10.10 16 12 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 13 C 0.45 21.03 7.64 87.66 0.67 21.70 16 14 O -0.62 -33.39 16.18 15.99 0.26 -33.13 16 15 C 0.07 2.58 3.71 71.24 0.26 2.84 16 16 O -0.30 -11.14 9.67 -73.39 -0.71 -11.85 16 17 C 0.18 5.25 6.68 22.49 0.15 5.40 16 18 C -0.26 -6.57 9.01 22.41 0.20 -6.37 16 19 C 0.17 3.83 7.30 22.36 0.16 3.99 16 20 F -0.13 -2.89 17.27 44.97 0.78 -2.11 16 21 C -0.22 -4.39 10.00 22.38 0.22 -4.17 16 22 C 0.17 3.79 7.30 22.36 0.16 3.95 16 23 F -0.12 -2.68 17.27 44.97 0.78 -1.91 16 24 C -0.20 -5.26 9.96 22.41 0.22 -5.04 16 25 H 0.23 7.98 7.80 -4.43 -0.03 7.95 16 26 H 0.10 4.64 6.63 -2.39 -0.02 4.63 16 27 H 0.07 3.19 7.61 -2.39 -0.02 3.18 16 28 H 0.27 12.74 8.31 -92.71 -0.77 11.97 16 29 H 0.10 3.46 7.62 -2.39 -0.02 3.44 16 30 H 0.11 3.43 7.18 -2.39 -0.02 3.41 16 31 H 0.16 3.76 6.30 -2.91 -0.02 3.75 16 32 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -59.80 308.91 8.27 -51.53 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.16 Total: 22.14 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.45 Total: 2.28 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -1.47 Total: -64.80 kcal Atomic # 8 Polarization: -44.54 SS G_CDS: -0.45 Total: -44.99 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 1.55 Total: -4.02 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -59.80 8.27 -51.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491381385.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.322 kcal (2) G-P(sol) polarization free energy of solvation -59.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds