Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99885 * 2 1 4 4 O 1.20824 * 120.00137 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99989 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47096 * 179.97438 * 5 3 2 7 7 C 1.36816 * 120.00494 * 269.99937 * 6 5 3 8 8 H 1.07997 * 120.00510 * 201.04949 * 7 6 5 9 9 C 1.39038 * 119.99383 * 21.04393 * 7 6 5 10 10 N 1.31379 * 120.00224 * 5.41561 * 9 7 6 11 11 Si 1.86800 * 119.99675 * 185.40929 * 9 7 6 12 12 H 1.48494 * 109.47258 * 90.00363 * 11 9 7 13 13 H 1.48496 * 109.47367 * 210.00646 * 11 9 7 14 14 H 1.48511 * 109.47129 * 330.00232 * 11 9 7 15 15 C 1.34784 * 119.99761 * 89.99984 * 6 5 3 16 16 O 1.21820 * 119.99804 * 355.70759 * 15 6 5 17 17 C 1.41474 * 119.99980 * 175.70865 * 15 6 5 18 18 C 1.35385 * 119.99812 * 174.30498 * 17 15 6 19 19 C 1.46650 * 120.00063 * 346.59575 * 18 17 15 20 20 C 1.44537 * 123.50444 * 317.66222 * 19 18 17 21 21 C 1.32734 * 113.09063 * 179.83606 * 20 19 18 22 22 S 1.75490 * 110.65060 * 0.42458 * 21 20 19 23 23 C 1.36343 * 123.50540 * 137.97085 * 19 18 17 24 24 H 1.09007 * 109.46452 * 60.00563 * 1 2 3 25 25 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47617 * 300.00692 * 1 2 3 27 27 H 1.08995 * 109.47385 * 59.99430 * 5 3 2 28 28 H 1.09002 * 109.47086 * 299.99692 * 5 3 2 29 29 H 0.97005 * 120.00037 * 185.00552 * 10 9 7 30 30 H 1.07999 * 119.99654 * 354.03678 * 17 15 6 31 31 H 1.07999 * 119.99753 * 166.59368 * 18 17 15 32 32 H 1.07997 * 123.45361 * 0.04764 * 20 19 18 33 33 H 1.07999 * 124.67336 * 180.19152 * 21 20 19 34 34 H 1.08003 * 124.60932 * 359.93658 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1761 3.3352 -1.1853 8 1 4.7892 4.2237 -1.2168 9 6 3.5846 2.8570 -2.3492 10 7 2.7544 1.8402 -2.2943 11 14 3.9702 3.6604 -3.9909 12 1 5.1429 2.9895 -4.6070 13 1 2.7969 3.5329 -4.8922 14 1 4.2773 5.0979 -3.7786 15 6 4.1722 3.3268 1.1668 16 8 3.9241 2.7682 2.2205 17 6 4.6604 4.6547 1.1679 18 6 4.7429 5.3445 2.3299 19 6 4.0650 4.8434 3.5299 20 6 2.7301 4.2893 3.5195 21 6 2.3204 3.8960 4.7192 22 16 3.5573 4.2006 5.9262 23 6 4.6262 4.8572 4.7724 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.9564 0.7806 -0.8890 28 1 3.9557 0.7810 0.8909 29 1 2.3982 1.4602 -3.1126 30 1 4.9713 5.1164 0.2424 31 1 5.3079 6.2639 2.3730 32 1 2.1291 4.2010 2.6266 33 1 1.3570 3.4533 4.9248 34 1 5.6140 5.2328 4.9952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491882726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -35.926965 kcal Electronic energy + Delta-G solvation = -21986.048648 eV Core-core repulsion = 18591.965408 eV Total energy + Delta-G solvation = -3394.083240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.57813 -38.65944 -36.91849 -35.30520 -34.49915 -32.19430 -31.61174 -29.11710 -28.26249 -26.33914 -25.07687 -23.38198 -21.81385 -20.05607 -19.38182 -18.32706 -17.27982 -16.76220 -16.43627 -16.06408 -15.40658 -15.24794 -14.76795 -14.39904 -14.01519 -13.40817 -13.21144 -12.60561 -12.53283 -12.47515 -12.30689 -12.13890 -11.74474 -11.64417 -11.40030 -11.34940 -11.22235 -10.80254 -10.61524 -10.46473 -10.19453 -9.76886 -9.55602 -9.05282 -9.03134 -8.67202 -8.28613 -7.89475 -7.16010 -6.55137 -4.09351 1.37944 2.05123 2.27641 2.62505 3.06335 3.12549 3.15719 3.54749 3.71318 3.79535 4.05968 4.40062 4.76203 5.05993 5.35085 5.53978 5.72791 5.80398 5.84711 5.88897 5.98844 6.15268 6.17519 6.31995 6.47749 6.56636 6.67947 6.82087 6.94537 6.97872 7.22023 7.26252 7.48834 7.61888 8.17259 8.89831 9.21732 9.31278 9.73795 10.49206 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.005863 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.087826 B = 4774.901629 C = 6061.705541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.377 6.377 3 C 0.496 3.504 4 O -0.507 6.507 5 C 0.159 3.841 6 N -0.418 5.418 7 C -0.324 4.324 8 H 0.106 0.894 9 C 0.037 3.963 10 N -0.877 5.877 11 Si 0.936 3.064 12 H -0.276 1.276 13 H -0.283 1.283 14 H -0.268 1.268 15 C 0.482 3.518 16 O -0.585 6.585 17 C -0.152 4.152 18 C -0.065 4.065 19 C -0.040 4.040 20 C -0.040 4.040 21 C -0.248 4.248 22 S 0.093 5.907 23 C -0.254 4.254 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.048 0.952 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.275 0.725 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.152 0.848 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 1.651 5.895 6.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.295 6.295 3 C 0.338 3.662 4 O -0.392 6.392 5 C 0.034 3.966 6 N -0.135 5.135 7 C -0.451 4.451 8 H 0.123 0.877 9 C -0.167 4.167 10 N -0.516 5.516 11 Si 0.763 3.237 12 H -0.202 1.202 13 H -0.208 1.208 14 H -0.193 1.193 15 C 0.275 3.725 16 O -0.473 6.473 17 C -0.174 4.174 18 C -0.088 4.088 19 C -0.055 4.055 20 C -0.069 4.069 21 C -0.382 4.382 22 S 0.356 5.644 23 C -0.390 4.390 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.139 0.861 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.149 0.851 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.170 0.830 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.629 1.331 7.773 7.911 hybrid contribution -0.198 0.504 -2.900 2.950 sum 0.431 1.835 4.873 5.225 Atomic orbital electron populations 1.22884 0.78973 1.01594 1.01448 1.86447 1.21432 1.35706 1.85877 1.23633 0.91976 0.80456 0.70161 1.90486 1.66445 1.36360 1.45929 1.20451 0.87570 0.85403 1.03208 1.43412 1.56015 1.08402 1.05663 1.19758 1.28991 1.11836 0.84539 0.87658 1.25308 0.94067 0.96827 1.00499 1.69469 1.28770 1.24268 1.29128 0.85763 0.77882 0.79487 0.80595 1.20175 1.20818 1.19293 1.16968 0.84061 0.87646 0.83779 1.90745 1.57413 1.68746 1.30428 1.22300 1.01557 0.95561 0.97982 1.21766 0.97311 0.98712 0.91051 1.19250 0.94088 0.99788 0.92371 1.21130 0.94027 0.94826 0.96920 1.24998 1.03654 1.12979 0.96585 1.82432 1.07813 1.61810 1.12339 1.25097 1.04724 1.12006 0.97178 0.92788 0.89788 0.93335 0.86095 0.90333 0.91419 0.85114 0.85720 0.84489 0.83024 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.81 10.56 101.05 1.07 1.88 16 2 O -0.38 -8.25 10.57 -39.26 -0.41 -8.66 16 3 C 0.50 12.29 5.76 36.01 0.21 12.50 16 4 O -0.51 -13.98 15.58 -18.75 -0.29 -14.27 16 5 C 0.16 3.81 5.22 -5.19 -0.03 3.78 16 6 N -0.42 -10.27 2.11 -119.38 -0.25 -10.53 16 7 C -0.32 -7.86 9.15 -15.03 -0.14 -8.00 16 8 H 0.11 2.36 5.84 -52.49 -0.31 2.05 16 9 C 0.04 0.89 5.23 -17.45 -0.09 0.80 16 10 N -0.88 -22.21 8.08 55.50 0.45 -21.76 16 11 Si 0.94 18.98 29.56 -169.99 -5.02 13.95 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 14 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 15 C 0.48 11.43 6.73 -15.02 -0.10 11.33 16 16 O -0.59 -14.69 11.69 5.08 0.06 -14.63 16 17 C -0.15 -3.06 9.12 -39.37 -0.36 -3.42 16 18 C -0.07 -1.15 9.98 -37.21 -0.37 -1.52 16 19 C -0.04 -0.76 4.49 -104.70 -0.47 -1.23 16 20 C -0.04 -0.81 7.25 -38.98 -0.28 -1.09 16 21 C -0.25 -4.42 11.11 28.85 0.32 -4.10 16 22 S 0.09 1.44 23.02 -107.50 -2.47 -1.04 16 23 C -0.25 -4.22 10.83 30.05 0.33 -3.89 16 24 H 0.05 0.99 8.13 -51.92 -0.42 0.57 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 27 H 0.12 2.87 6.60 -51.93 -0.34 2.53 16 28 H 0.08 1.79 7.48 -51.93 -0.39 1.40 16 29 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 30 H 0.13 2.42 6.03 -52.49 -0.32 2.10 16 31 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.14 3.10 7.49 -52.49 -0.39 2.70 16 33 H 0.15 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 LS Contribution 307.70 15.07 4.64 4.64 Total: -1.00 -30.22 307.70 -6.65 -36.87 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -3.42 Total: 8.40 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: 0.08 Total: 7.02 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.20 Total: -32.29 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -0.65 Total: -37.56 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.95 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.47 Total: -1.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.22 -6.65 -36.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491882726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.943 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds