Wall clock time and date at job start Tue Mar 31 2020 06:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99885 * 2 1 4 4 O 1.20824 * 120.00137 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99989 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.47096 * 179.97438 * 5 3 2 7 7 C 1.36816 * 120.00494 * 269.99937 * 6 5 3 8 8 H 1.07997 * 120.00510 * 201.04949 * 7 6 5 9 9 C 1.39038 * 119.99383 * 21.04393 * 7 6 5 10 10 N 1.31379 * 120.00224 * 5.41561 * 9 7 6 11 11 Si 1.86800 * 119.99675 * 185.40929 * 9 7 6 12 12 H 1.48494 * 109.47258 * 90.00363 * 11 9 7 13 13 H 1.48496 * 109.47367 * 210.00646 * 11 9 7 14 14 H 1.48511 * 109.47129 * 330.00232 * 11 9 7 15 15 C 1.34784 * 119.99761 * 89.99984 * 6 5 3 16 16 O 1.21820 * 119.99804 * 355.70759 * 15 6 5 17 17 C 1.41474 * 119.99980 * 175.70865 * 15 6 5 18 18 C 1.35385 * 119.99812 * 174.30498 * 17 15 6 19 19 C 1.46650 * 120.00063 * 346.59575 * 18 17 15 20 20 C 1.44537 * 123.50444 * 317.66222 * 19 18 17 21 21 C 1.32734 * 113.09063 * 179.83606 * 20 19 18 22 22 S 1.75490 * 110.65060 * 0.42458 * 21 20 19 23 23 C 1.36343 * 123.50540 * 137.97085 * 19 18 17 24 24 H 1.09007 * 109.46452 * 60.00563 * 1 2 3 25 25 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47617 * 300.00692 * 1 2 3 27 27 H 1.08995 * 109.47385 * 59.99430 * 5 3 2 28 28 H 1.09002 * 109.47086 * 299.99692 * 5 3 2 29 29 H 0.97005 * 120.00037 * 185.00552 * 10 9 7 30 30 H 1.07999 * 119.99654 * 354.03678 * 17 15 6 31 31 H 1.07999 * 119.99753 * 166.59368 * 18 17 15 32 32 H 1.07997 * 123.45361 * 0.04764 * 20 19 18 33 33 H 1.07999 * 124.67336 * 180.19152 * 21 20 19 34 34 H 1.08003 * 124.60932 * 359.93658 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.1761 3.3352 -1.1853 8 1 4.7892 4.2237 -1.2168 9 6 3.5846 2.8570 -2.3492 10 7 2.7544 1.8402 -2.2943 11 14 3.9702 3.6604 -3.9909 12 1 5.1429 2.9895 -4.6070 13 1 2.7969 3.5329 -4.8922 14 1 4.2773 5.0979 -3.7786 15 6 4.1722 3.3268 1.1668 16 8 3.9241 2.7682 2.2205 17 6 4.6604 4.6547 1.1679 18 6 4.7429 5.3445 2.3299 19 6 4.0650 4.8434 3.5299 20 6 2.7301 4.2893 3.5195 21 6 2.3204 3.8960 4.7192 22 16 3.5573 4.2006 5.9262 23 6 4.6262 4.8572 4.7724 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.9564 0.7806 -0.8890 28 1 3.9557 0.7810 0.8909 29 1 2.3982 1.4602 -3.1126 30 1 4.9713 5.1164 0.2424 31 1 5.3079 6.2639 2.3730 32 1 2.1291 4.2010 2.6266 33 1 1.3570 3.4533 4.9248 34 1 5.6140 5.2328 4.9952 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491882726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:59 Heat of formation + Delta-G solvation = -52.835483 kcal Electronic energy + Delta-G solvation = -21986.781857 eV Core-core repulsion = 18591.965408 eV Total energy + Delta-G solvation = -3394.816449 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.38379 -40.41250 -38.44029 -37.09990 -36.35355 -33.72584 -33.42501 -30.71061 -29.83685 -27.93038 -26.84145 -24.90222 -23.35239 -21.82823 -21.10806 -19.88871 -18.74893 -18.53476 -18.26194 -17.58945 -17.19481 -16.98773 -16.37141 -16.10643 -15.67160 -15.09183 -14.76159 -14.21783 -14.18474 -14.00529 -13.85444 -13.60205 -13.35094 -13.09508 -13.07597 -12.95638 -12.82225 -12.53627 -12.30332 -12.08141 -11.61982 -11.53402 -11.40784 -10.93001 -10.52116 -10.39728 -9.91677 -9.51708 -8.54721 -8.34873 -5.96037 -0.04269 0.57967 0.94699 1.25853 1.46682 1.48625 1.58600 1.84791 2.00421 2.14585 2.34720 2.67798 3.03701 3.28344 4.01860 4.20057 4.27030 4.34982 4.39763 4.42458 4.48018 4.56777 4.71630 4.73354 4.76266 4.86535 5.08574 5.37561 5.40134 5.45570 5.54128 5.69412 5.78482 5.83241 6.34909 7.07453 7.33740 7.52651 7.94343 8.69424 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.017006 B = 0.005863 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.087826 B = 4774.901629 C = 6061.705541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.380 6.380 3 C 0.498 3.502 4 O -0.544 6.544 5 C 0.161 3.839 6 N -0.437 5.437 7 C -0.339 4.339 8 H 0.120 0.880 9 C -0.010 4.010 10 N -0.907 5.907 11 Si 1.003 2.997 12 H -0.266 1.266 13 H -0.294 1.294 14 H -0.258 1.258 15 C 0.479 3.521 16 O -0.607 6.607 17 C -0.196 4.196 18 C -0.025 4.025 19 C -0.083 4.083 20 C -0.067 4.067 21 C -0.263 4.263 22 S 0.167 5.833 23 C -0.244 4.244 24 H 0.042 0.958 25 H 0.132 0.868 26 H 0.047 0.953 27 H 0.117 0.883 28 H 0.081 0.919 29 H 0.271 0.729 30 H 0.143 0.857 31 H 0.171 0.829 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 2.729 7.320 8.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.297 6.297 3 C 0.341 3.659 4 O -0.432 6.432 5 C 0.035 3.965 6 N -0.155 5.155 7 C -0.466 4.466 8 H 0.137 0.863 9 C -0.209 4.209 10 N -0.547 5.547 11 Si 0.827 3.173 12 H -0.191 1.191 13 H -0.220 1.220 14 H -0.182 1.182 15 C 0.274 3.726 16 O -0.496 6.496 17 C -0.218 4.218 18 C -0.047 4.047 19 C -0.097 4.097 20 C -0.096 4.096 21 C -0.397 4.397 22 S 0.431 5.569 23 C -0.380 4.380 24 H 0.061 0.939 25 H 0.150 0.850 26 H 0.066 0.934 27 H 0.135 0.865 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.188 0.812 32 H 0.115 0.885 33 H 0.180 0.820 34 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.904 2.401 9.220 9.716 hybrid contribution -0.657 0.156 -3.025 3.099 sum 1.246 2.557 6.195 6.817 Atomic orbital electron populations 1.23220 0.76563 1.04583 1.00887 1.86415 1.23805 1.34212 1.85303 1.23807 0.92362 0.80590 0.69116 1.90451 1.67281 1.37651 1.47828 1.20418 0.87299 0.85897 1.02890 1.43592 1.57086 1.08606 1.06214 1.20162 1.29330 1.12439 0.84687 0.86274 1.26191 0.93847 0.97308 1.03599 1.69566 1.30052 1.25727 1.29370 0.84757 0.77274 0.79087 0.76228 1.19108 1.22043 1.18195 1.17597 0.82916 0.88887 0.83188 1.90709 1.58103 1.69759 1.31070 1.22247 1.05105 0.94660 0.99753 1.22299 0.94078 0.98821 0.89536 1.19389 0.94102 1.02351 0.93876 1.20945 0.95137 0.97173 0.96376 1.25329 1.05209 1.12008 0.97172 1.82198 1.05258 1.59657 1.09797 1.25599 1.06034 1.09814 0.96557 0.93913 0.84980 0.93379 0.86525 0.90149 0.91885 0.83928 0.81164 0.88521 0.82019 0.79503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 10.56 113.37 1.20 2.66 16 2 O -0.38 -17.00 10.57 -51.42 -0.54 -17.54 16 3 C 0.50 25.68 5.76 71.24 0.41 26.09 16 4 O -0.54 -31.41 15.58 21.97 0.34 -31.07 16 5 C 0.16 8.02 5.22 85.63 0.45 8.47 16 6 N -0.44 -22.24 2.11 -649.77 -1.37 -23.61 16 7 C -0.34 -16.82 9.15 84.11 0.77 -16.05 16 8 H 0.12 5.37 5.84 -2.91 -0.02 5.35 16 9 C -0.01 -0.48 5.23 84.95 0.44 -0.03 16 10 N -0.91 -47.43 8.08 21.68 0.18 -47.25 16 11 Si 1.00 39.26 29.56 68.60 2.03 41.29 16 12 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 13 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 14 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 15 C 0.48 23.32 6.73 85.04 0.57 23.90 16 16 O -0.61 -31.28 11.69 -4.73 -0.06 -31.34 16 17 C -0.20 -7.86 9.12 22.41 0.20 -7.65 16 18 C -0.02 -0.83 9.98 23.81 0.24 -0.59 16 19 C -0.08 -2.99 4.49 -19.92 -0.09 -3.08 16 20 C -0.07 -2.73 7.25 22.70 0.16 -2.56 16 21 C -0.26 -9.17 11.11 66.65 0.74 -8.43 16 22 S 0.17 4.62 23.02 -56.49 -1.30 3.32 16 23 C -0.24 -7.23 10.83 67.38 0.73 -6.50 16 24 H 0.04 1.60 8.13 -2.38 -0.02 1.58 16 25 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 26 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 27 H 0.12 5.81 6.60 -2.39 -0.02 5.79 16 28 H 0.08 3.84 7.48 -2.39 -0.02 3.82 16 29 H 0.27 13.65 8.32 -92.70 -0.77 12.88 16 30 H 0.14 5.22 6.03 -2.91 -0.02 5.20 16 31 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 32 H 0.10 4.67 7.49 -2.91 -0.02 4.65 16 33 H 0.16 5.09 8.06 -2.91 -0.02 5.06 16 34 H 0.19 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -67.95 307.70 6.24 -61.72 By element: Atomic # 1 Polarization: 27.14 SS G_CDS: 1.13 Total: 28.27 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: 5.83 Total: 16.21 kcal Atomic # 7 Polarization: -69.66 SS G_CDS: -1.19 Total: -70.86 kcal Atomic # 8 Polarization: -79.69 SS G_CDS: -0.26 Total: -79.95 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.30 Total: 3.32 kcal Total: -67.95 6.24 -61.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491882726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.882 kcal (2) G-P(sol) polarization free energy of solvation -67.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds