Wall clock time and date at job start Tue Mar 31 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34232 * 116.99774 * 2 1 4 4 O 1.20818 * 120.00114 * 0.02562 * 3 2 1 5 5 C 1.50707 * 119.99565 * 180.02562 * 3 2 1 6 6 N 1.46495 * 109.46934 * 180.02562 * 5 3 2 7 7 C 1.36819 * 120.00206 * 270.00165 * 6 5 3 8 8 H 1.08005 * 120.00021 * 9.73376 * 7 6 5 9 9 C 1.39031 * 120.00317 * 189.74086 * 7 6 5 10 10 N 1.31386 * 119.99724 * 267.32407 * 9 7 6 11 11 Si 1.86793 * 120.00449 * 87.32102 * 9 7 6 12 12 H 1.48501 * 109.46919 * 59.99877 * 11 9 7 13 13 H 1.48503 * 109.47483 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47269 * 300.00561 * 11 9 7 15 15 C 1.34778 * 120.00053 * 90.00424 * 6 5 3 16 16 O 1.21821 * 119.99863 * 174.87692 * 15 6 5 17 17 C 1.41472 * 119.99726 * 355.14440 * 15 6 5 18 18 C 1.35396 * 119.99738 * 184.37163 * 17 15 6 19 19 C 1.46654 * 119.99689 * 185.43674 * 18 17 15 20 20 C 1.44530 * 123.50256 * 185.04674 * 19 18 17 21 21 C 1.32744 * 113.09571 * 179.76660 * 20 19 18 22 22 S 1.75491 * 110.64419 * 0.48596 * 21 20 19 23 23 C 1.36344 * 123.50747 * 5.34807 * 19 18 17 24 24 H 1.09006 * 109.47124 * 59.99182 * 1 2 3 25 25 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46996 * 299.99494 * 1 2 3 27 27 H 1.08999 * 109.47083 * 60.00186 * 5 3 2 28 28 H 1.08999 * 109.47139 * 300.00559 * 5 3 2 29 29 H 0.97003 * 120.00205 * 185.02350 * 10 9 7 30 30 H 1.08002 * 120.00540 * 4.37861 * 17 15 6 31 31 H 1.07994 * 120.00042 * 5.43798 * 18 17 15 32 32 H 1.08005 * 123.45706 * 359.97438 * 20 19 18 33 33 H 1.07995 * 124.67808 * 180.16192 * 21 20 19 34 34 H 1.07995 * 124.60808 * 359.97100 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.1751 3.3365 -1.1844 8 1 3.8733 2.8753 -2.1132 9 6 4.7604 4.5976 -1.1925 10 7 4.0057 5.6723 -1.1523 11 14 6.6197 4.7641 -1.2604 12 1 7.1289 4.1242 -2.5000 13 1 6.9883 6.2026 -1.2591 14 1 7.2200 4.0976 -0.0769 15 6 4.1734 3.3252 1.1677 16 8 4.6081 4.4632 1.1703 17 6 3.8750 2.6790 2.3904 18 6 3.9830 3.3562 3.5578 19 6 3.7902 2.6562 4.8320 20 6 3.7834 3.3218 6.1149 21 6 3.5873 2.4911 7.1315 22 16 3.4145 0.8415 6.5582 23 6 3.6045 1.3090 4.9301 24 1 -0.3634 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 3.9557 0.7809 -0.8908 28 1 3.9564 0.7805 0.8891 29 1 4.4086 6.5512 -1.2314 30 1 3.5612 1.6456 2.3926 31 1 4.2111 4.4117 3.5507 32 1 3.9203 4.3865 6.2340 33 1 3.5455 2.7886 8.1689 34 1 3.5806 0.6304 4.0904 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491882727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:01 Heat of formation + Delta-G solvation = -49.638749 kcal Electronic energy + Delta-G solvation = -21278.080007 eV Core-core repulsion = 17883.402179 eV Total energy + Delta-G solvation = -3394.677828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60400 -40.29056 -38.65123 -37.46711 -36.03558 -34.89845 -33.58252 -30.21036 -29.91052 -28.00059 -27.24205 -25.39896 -23.18062 -22.13575 -20.84752 -19.45776 -19.37012 -18.70531 -18.47182 -17.67901 -17.41065 -16.94908 -16.71509 -16.44931 -15.63119 -15.18104 -14.62830 -14.49177 -14.36170 -14.25842 -14.15459 -13.97998 -13.39997 -13.30945 -13.06213 -13.02356 -12.93362 -12.57500 -12.47929 -12.04783 -11.75794 -11.70660 -11.68865 -10.99937 -10.83882 -10.32383 -9.78566 -9.56418 -9.05748 -8.75337 -5.41254 -0.31262 0.62478 0.79498 1.11128 1.24517 1.32940 1.47262 1.51641 1.62652 2.00301 2.20579 2.55519 3.06772 3.11844 3.83279 3.96823 4.01518 4.15033 4.19254 4.33452 4.35740 4.41674 4.50228 4.57022 4.70282 4.75334 4.89998 5.12237 5.25817 5.36159 5.40265 5.50362 5.68709 5.97748 6.65178 6.82628 7.19410 7.44683 8.05076 8.29578 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.012337 B = 0.005775 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.974679 B = 4847.467535 C = 6580.507367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.439 3.561 4 O -0.528 6.528 5 C 0.108 3.892 6 N -0.389 5.389 7 C -0.528 4.528 8 H 0.098 0.902 9 C 0.204 3.796 10 N -0.717 5.717 11 Si 0.883 3.117 12 H -0.254 1.254 13 H -0.289 1.289 14 H -0.289 1.289 15 C 0.401 3.599 16 O -0.630 6.630 17 C -0.177 4.177 18 C -0.058 4.058 19 C -0.100 4.100 20 C -0.138 4.138 21 C -0.224 4.224 22 S 0.203 5.797 23 C -0.256 4.256 24 H 0.051 0.949 25 H 0.141 0.859 26 H 0.054 0.946 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.284 0.716 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.150 0.850 33 H 0.195 0.805 34 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 -14.187 12.024 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.280 3.720 4 O -0.415 6.415 5 C -0.017 4.017 6 N -0.103 5.103 7 C -0.642 4.642 8 H 0.116 0.884 9 C -0.031 4.031 10 N -0.337 5.337 11 Si 0.703 3.297 12 H -0.178 1.178 13 H -0.215 1.215 14 H -0.216 1.216 15 C 0.202 3.798 16 O -0.523 6.523 17 C -0.200 4.200 18 C -0.081 4.081 19 C -0.114 4.114 20 C -0.168 4.168 21 C -0.359 4.359 22 S 0.469 5.531 23 C -0.393 4.393 24 H 0.070 0.930 25 H 0.159 0.841 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.161 0.839 29 H 0.096 0.904 30 H 0.149 0.851 31 H 0.121 0.879 32 H 0.168 0.832 33 H 0.212 0.788 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.564 -14.596 12.772 19.720 hybrid contribution 0.583 2.268 -1.308 2.683 sum -2.980 -12.328 11.464 17.096 Atomic orbital electron populations 1.23504 0.75449 1.05678 1.01860 1.86495 1.24515 1.32210 1.84160 1.25102 0.93507 0.81429 0.71917 1.90725 1.67511 1.38025 1.45282 1.21461 0.86421 0.85251 1.08613 1.43496 1.52696 1.08601 1.05463 1.18432 1.57066 1.03040 0.85658 0.88442 1.25458 1.01441 0.92887 0.83362 1.70817 1.42734 1.01437 1.18684 0.86857 0.87441 0.76866 0.78509 1.17833 1.21485 1.21557 1.17026 0.90488 0.87471 0.84832 1.90517 1.55124 1.20964 1.85648 1.21912 1.04867 1.00629 0.92580 1.21589 0.97526 0.98522 0.90491 1.19480 1.05705 0.92839 0.93346 1.21458 1.03328 1.01598 0.90383 1.25800 1.09215 0.96665 1.04191 1.82556 1.68625 1.07246 0.94640 1.25758 1.10054 0.98980 1.04491 0.93009 0.84055 0.92698 0.83860 0.83867 0.90437 0.85062 0.87944 0.83248 0.78828 0.81067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.56 113.37 1.20 1.86 16 2 O -0.36 -10.47 10.57 -51.44 -0.54 -11.01 16 3 C 0.44 16.70 7.99 71.24 0.57 17.27 16 4 O -0.53 -25.78 16.18 21.99 0.36 -25.43 16 5 C 0.11 3.94 5.58 85.64 0.48 4.42 16 6 N -0.39 -19.67 2.11 -649.79 -1.37 -21.04 16 7 C -0.53 -29.66 9.47 84.11 0.80 -28.87 16 8 H 0.10 5.41 8.06 -2.91 -0.02 5.39 16 9 C 0.20 11.67 2.99 84.95 0.25 11.93 16 10 N -0.72 -42.70 13.41 21.68 0.29 -42.41 16 11 Si 0.88 44.38 28.52 68.60 1.96 46.33 16 12 H -0.25 -11.58 7.11 99.48 0.71 -10.87 16 13 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 14 H -0.29 -15.60 7.11 99.48 0.71 -14.90 16 15 C 0.40 21.53 7.35 85.04 0.62 22.15 16 16 O -0.63 -38.99 12.30 -4.74 -0.06 -39.05 16 17 C -0.18 -7.63 8.48 22.41 0.19 -7.44 16 18 C -0.06 -2.35 9.56 23.81 0.23 -2.12 16 19 C -0.10 -3.18 5.96 -19.92 -0.12 -3.30 16 20 C -0.14 -3.64 10.38 22.70 0.24 -3.40 16 21 C -0.22 -4.44 11.11 66.64 0.74 -3.70 16 22 S 0.20 3.85 23.02 -56.49 -1.30 2.55 16 23 C -0.26 -6.69 10.24 67.38 0.69 -6.00 16 24 H 0.05 1.30 8.13 -2.38 -0.02 1.28 16 25 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 27 H 0.14 4.41 8.04 -2.39 -0.02 4.39 16 28 H 0.14 4.06 6.24 -2.39 -0.01 4.04 16 29 H 0.28 15.54 8.32 -92.71 -0.77 14.77 16 30 H 0.13 4.59 4.69 -2.91 -0.01 4.57 16 31 H 0.10 4.67 7.48 -2.91 -0.02 4.64 16 32 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.19 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.17 4.02 6.88 -2.91 -0.02 4.00 16 Total: -1.00 -80.48 317.33 6.35 -74.13 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.13 Total: 13.13 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 5.88 Total: 2.80 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -1.08 Total: -63.45 kcal Atomic # 8 Polarization: -75.24 SS G_CDS: -0.25 Total: -75.49 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.96 Total: 46.33 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.30 Total: 2.55 kcal Total: -80.48 6.35 -74.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491882727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.490 kcal (2) G-P(sol) polarization free energy of solvation -80.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds