Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86790 * 120.00236 * 2 1 4 4 H 1.48497 * 109.47448 * 270.00553 * 3 2 1 5 5 H 1.48504 * 109.47030 * 30.00097 * 3 2 1 6 6 H 1.48504 * 109.47444 * 149.99969 * 3 2 1 7 7 C 1.38804 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00107 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99864 * 179.97438 * 7 2 1 10 10 C 1.80994 * 99.99893 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46926 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00128 * 5.55078 * 11 10 9 13 13 N 1.34776 * 120.00126 * 185.54131 * 11 10 9 14 14 C 1.46929 * 120.55062 * 353.92388 * 13 11 10 15 15 C 1.53432 * 107.79161 * 224.60289 * 14 13 11 16 16 C 1.52857 * 108.84906 * 296.79361 * 15 14 13 17 17 C 1.50585 * 110.57099 * 51.22068 * 16 15 14 18 18 C 1.38727 * 118.93382 * 159.13986 * 17 16 15 19 19 F 1.35095 * 119.87886 * 0.09794 * 18 17 16 20 20 C 1.38357 * 120.24685 * 179.82186 * 18 17 16 21 21 C 1.38267 * 120.12477 * 0.31486 * 20 18 17 22 22 C 1.38036 * 119.93341 * 0.06727 * 21 20 18 23 23 C 1.38528 * 121.51482 * 339.68047 * 17 16 15 24 24 H 0.97003 * 119.99515 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47378 * 60.00417 * 10 9 7 26 26 H 1.09005 * 109.47413 * 299.99985 * 10 9 7 27 27 H 1.09001 * 109.79424 * 344.17360 * 14 13 11 28 28 H 1.09001 * 109.79733 * 104.96570 * 14 13 11 29 29 H 1.08998 * 109.57173 * 56.60395 * 15 14 13 30 30 H 1.08998 * 109.57170 * 176.98330 * 15 14 13 31 31 H 1.09001 * 109.26593 * 171.68419 * 16 15 14 32 32 H 1.08995 * 109.26649 * 291.19099 * 16 15 14 33 33 H 1.07995 * 119.93670 * 180.30228 * 20 18 17 34 34 H 1.08001 * 120.03194 * 180.08207 * 21 20 18 35 35 H 1.08003 * 119.95927 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2022 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2327 -0.0026 12 8 6.3432 -2.3014 0.0997 13 7 6.0465 -4.4894 -0.1163 14 6 5.1289 -5.6369 -0.1071 15 6 5.7293 -6.7099 0.8107 16 6 7.0598 -7.1766 0.2203 17 6 7.9434 -5.9976 -0.0905 18 6 9.3109 -6.1972 -0.2118 19 9 9.8269 -7.4355 -0.0529 20 6 10.1475 -5.1337 -0.5005 21 6 9.6250 -3.8640 -0.6633 22 6 8.2662 -3.6568 -0.5362 23 6 7.4225 -4.7234 -0.2459 24 1 -0.4849 0.8401 0.0004 25 1 3.6432 -3.4311 -0.8927 26 1 3.6439 -3.4323 0.8873 27 1 4.1554 -5.3281 0.2737 28 1 5.0216 -6.0319 -1.1173 29 1 5.8972 -6.2898 1.8024 30 1 5.0445 -7.5550 0.8811 31 1 7.5625 -7.8271 0.9361 32 1 6.8705 -7.7314 -0.6986 33 1 11.2107 -5.2957 -0.5986 34 1 10.2793 -3.0352 -0.8899 35 1 7.8576 -2.6651 -0.6630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000531131845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -46.926975 kcal Electronic energy + Delta-G solvation = -20912.343160 eV Core-core repulsion = 17530.155713 eV Total energy + Delta-G solvation = -3382.187447 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.03005 -41.11959 -38.43797 -36.65017 -33.58961 -32.51318 -31.28985 -30.22247 -28.71251 -25.94075 -25.66584 -23.60287 -23.14178 -20.88125 -19.61743 -17.99075 -17.64472 -17.05272 -16.49614 -16.05002 -15.70629 -15.55723 -15.52665 -15.04020 -14.42028 -14.17419 -13.97115 -13.63800 -13.38769 -13.20034 -13.09103 -12.87456 -12.55229 -12.29284 -11.94392 -11.49871 -11.39992 -11.33089 -11.07241 -10.99926 -10.72617 -10.20501 -9.92181 -9.40318 -9.07678 -8.71528 -8.61805 -8.02909 -7.02714 -6.36066 -4.09593 1.04549 1.11230 2.41174 2.62135 2.97523 3.27486 3.44127 3.47169 3.55937 4.12825 4.23497 4.27694 4.43830 4.48375 4.64009 4.79504 4.89313 4.99757 5.02568 5.03048 5.21182 5.30067 5.36595 5.42387 5.57361 5.58505 5.60738 5.82339 5.84121 5.93982 6.01659 6.05809 6.39125 6.42034 6.97348 7.16371 7.86691 8.08483 8.33994 9.09568 10.73030 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.003772 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.522593 B = 7421.822282 C = 8238.664762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.137 6.137 10 C -0.123 4.123 11 C 0.535 3.465 12 O -0.490 6.490 13 N -0.557 5.557 14 C 0.098 3.902 15 C -0.134 4.134 16 C -0.075 4.075 17 C -0.158 4.158 18 C 0.114 3.886 19 F -0.140 7.140 20 C -0.181 4.181 21 C -0.073 4.073 22 C -0.162 4.162 23 C 0.195 3.805 24 H 0.272 0.728 25 H 0.101 0.899 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.362 -14.577 -0.606 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.159 1.159 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.089 5.911 10 C -0.273 4.273 11 C 0.325 3.675 12 O -0.364 6.364 13 N -0.282 5.282 14 C -0.024 4.024 15 C -0.172 4.172 16 C -0.112 4.112 17 C -0.162 4.162 18 C 0.094 3.906 19 F -0.119 7.119 20 C -0.201 4.201 21 C -0.091 4.091 22 C -0.182 4.182 23 C 0.099 3.901 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 16.212 -13.103 -0.524 20.851 hybrid contribution -0.681 -0.671 -0.007 0.956 sum 15.530 -13.773 -0.531 20.765 Atomic orbital electron populations 1.69935 1.05912 1.27879 1.47701 1.24703 0.94453 0.98968 0.93068 0.86750 0.81907 0.83305 0.79981 1.19147 1.19826 1.15901 1.22273 0.87945 0.97624 1.59233 0.89260 1.84806 1.09741 0.99117 1.97449 1.23348 0.92714 1.05116 1.06128 1.20551 0.91225 0.80930 0.74830 1.90512 1.57783 1.42211 1.45891 1.45832 1.04676 1.07610 1.70047 1.22099 0.93407 0.85696 1.01222 1.21872 0.96830 0.98913 0.99574 1.20296 0.94461 0.94697 1.01704 1.19332 0.92858 0.95020 1.09002 1.17231 0.90742 0.79884 1.02711 1.91460 1.87160 1.40065 1.93167 1.21030 1.00085 0.92497 1.06469 1.20954 0.95025 0.96017 0.97146 1.22346 0.93142 1.01636 1.01070 1.17441 0.83304 0.92681 0.96689 0.91833 0.88055 0.87850 0.88067 0.90157 0.90635 0.89233 0.90042 0.90280 0.85045 0.84750 0.80829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.97 55.49 0.78 -25.07 16 2 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 3 Si 0.86 21.13 27.74 -169.99 -4.71 16.42 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 7 C -0.52 -14.51 10.04 30.94 0.31 -14.20 16 8 H 0.09 2.57 8.03 -52.49 -0.42 2.15 16 9 S -0.14 -3.32 18.55 -107.50 -1.99 -5.31 16 10 C -0.12 -2.23 4.57 36.01 0.16 -2.07 16 11 C 0.53 9.19 7.57 -10.98 -0.08 9.11 16 12 O -0.49 -9.75 12.55 5.55 0.07 -9.68 16 13 N -0.56 -7.77 2.97 -112.86 -0.34 -8.11 16 14 C 0.10 1.00 6.16 -3.58 -0.02 0.97 16 15 C -0.13 -1.15 6.11 -26.58 -0.16 -1.31 16 16 C -0.07 -0.70 5.49 -28.01 -0.15 -0.86 16 17 C -0.16 -1.93 5.77 -104.39 -0.60 -2.53 16 18 C 0.11 1.37 7.23 -39.36 -0.28 1.08 16 19 F -0.14 -1.64 16.53 2.25 0.04 -1.60 16 20 C -0.18 -2.00 10.01 -39.53 -0.40 -2.40 16 21 C -0.07 -0.85 10.04 -39.64 -0.40 -1.25 16 22 C -0.16 -2.33 8.87 -39.35 -0.35 -2.68 16 23 C 0.19 2.72 6.31 -83.63 -0.53 2.19 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.10 1.69 8.06 -51.91 -0.42 1.27 16 26 H 0.10 1.73 7.60 -51.91 -0.39 1.34 16 27 H 0.10 0.96 6.27 -51.93 -0.33 0.63 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.72 7.83 -51.93 -0.41 0.31 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.18 2.85 4.97 -53.64 -0.27 2.58 16 LS Contribution 306.69 15.07 4.62 4.62 Total: -1.00 -31.67 306.69 -8.07 -39.74 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -3.93 Total: 0.27 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -2.60 Total: -11.27 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.44 Total: -33.18 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.71 Total: 16.42 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.99 Total: -5.31 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.67 -8.07 -39.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531131845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.191 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds