Wall clock time and date at job start Tue Mar 31 2020 06:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86790 * 120.00236 * 2 1 4 4 H 1.48497 * 109.47448 * 270.00553 * 3 2 1 5 5 H 1.48504 * 109.47030 * 30.00097 * 3 2 1 6 6 H 1.48504 * 109.47444 * 149.99969 * 3 2 1 7 7 C 1.38804 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00107 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99864 * 179.97438 * 7 2 1 10 10 C 1.80994 * 99.99893 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.46926 * 180.02562 * 10 9 7 12 12 O 1.21286 * 120.00128 * 5.55078 * 11 10 9 13 13 N 1.34776 * 120.00126 * 185.54131 * 11 10 9 14 14 C 1.46929 * 120.55062 * 353.92388 * 13 11 10 15 15 C 1.53432 * 107.79161 * 224.60289 * 14 13 11 16 16 C 1.52857 * 108.84906 * 296.79361 * 15 14 13 17 17 C 1.50585 * 110.57099 * 51.22068 * 16 15 14 18 18 C 1.38727 * 118.93382 * 159.13986 * 17 16 15 19 19 F 1.35095 * 119.87886 * 0.09794 * 18 17 16 20 20 C 1.38357 * 120.24685 * 179.82186 * 18 17 16 21 21 C 1.38267 * 120.12477 * 0.31486 * 20 18 17 22 22 C 1.38036 * 119.93341 * 0.06727 * 21 20 18 23 23 C 1.38528 * 121.51482 * 339.68047 * 17 16 15 24 24 H 0.97003 * 119.99515 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47378 * 60.00417 * 10 9 7 26 26 H 1.09005 * 109.47413 * 299.99985 * 10 9 7 27 27 H 1.09001 * 109.79424 * 344.17360 * 14 13 11 28 28 H 1.09001 * 109.79733 * 104.96570 * 14 13 11 29 29 H 1.08998 * 109.57173 * 56.60395 * 15 14 13 30 30 H 1.08998 * 109.57170 * 176.98330 * 15 14 13 31 31 H 1.09001 * 109.26593 * 171.68419 * 16 15 14 32 32 H 1.08995 * 109.26649 * 291.19099 * 16 15 14 33 33 H 1.07995 * 119.93670 * 180.30228 * 20 18 17 34 34 H 1.08001 * 120.03194 * 180.08207 * 21 20 18 35 35 H 1.08003 * 119.95927 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7723 -1.2022 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2327 -0.0026 12 8 6.3432 -2.3014 0.0997 13 7 6.0465 -4.4894 -0.1163 14 6 5.1289 -5.6369 -0.1071 15 6 5.7293 -6.7099 0.8107 16 6 7.0598 -7.1766 0.2203 17 6 7.9434 -5.9976 -0.0905 18 6 9.3109 -6.1972 -0.2118 19 9 9.8269 -7.4355 -0.0529 20 6 10.1475 -5.1337 -0.5005 21 6 9.6250 -3.8640 -0.6633 22 6 8.2662 -3.6568 -0.5362 23 6 7.4225 -4.7234 -0.2459 24 1 -0.4849 0.8401 0.0004 25 1 3.6432 -3.4311 -0.8927 26 1 3.6439 -3.4323 0.8873 27 1 4.1554 -5.3281 0.2737 28 1 5.0216 -6.0319 -1.1173 29 1 5.8972 -6.2898 1.8024 30 1 5.0445 -7.5550 0.8811 31 1 7.5625 -7.8271 0.9361 32 1 6.8705 -7.7314 -0.6986 33 1 11.2107 -5.2957 -0.5986 34 1 10.2793 -3.0352 -0.8899 35 1 7.8576 -2.6651 -0.6630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000531131845.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:01 Heat of formation + Delta-G solvation = -64.890645 kcal Electronic energy + Delta-G solvation = -20913.122123 eV Core-core repulsion = 17530.155713 eV Total energy + Delta-G solvation = -3382.966410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.94193 -42.20619 -39.58272 -37.61235 -34.68764 -34.55705 -32.37887 -31.22061 -29.88996 -27.87125 -26.79966 -24.50964 -24.13983 -21.95063 -20.63195 -19.73274 -18.86036 -18.21662 -17.46057 -17.13779 -17.11123 -16.74678 -16.66582 -16.47962 -15.78976 -15.41821 -15.03354 -14.89570 -14.67837 -14.34941 -14.21929 -14.00326 -13.69013 -13.37474 -13.24096 -13.07185 -12.97736 -12.70214 -12.29435 -12.16560 -11.88247 -11.78981 -11.18424 -11.17598 -10.67540 -10.55991 -9.64488 -9.09576 -8.98295 -8.52081 -6.23651 0.06743 0.13628 0.88856 1.31361 1.36818 1.39713 1.50059 1.82085 2.23992 2.59049 2.62655 2.86596 3.21245 3.31392 3.60579 3.64557 3.89189 3.99521 4.03040 4.12659 4.23070 4.33743 4.37367 4.46060 4.59631 4.65305 4.77635 4.93809 5.02358 5.06699 5.15082 5.19967 5.42060 5.44459 5.70317 5.96865 6.07453 6.11659 6.81895 6.93129 8.60140 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.031505 B = 0.003772 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.522593 B = 7421.822282 C = 8238.664762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.048 3.952 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.528 4.528 8 H 0.066 0.934 9 S -0.169 6.169 10 C -0.106 4.106 11 C 0.535 3.465 12 O -0.526 6.526 13 N -0.550 5.550 14 C 0.086 3.914 15 C -0.126 4.126 16 C -0.076 4.076 17 C -0.156 4.156 18 C 0.105 3.895 19 F -0.137 7.137 20 C -0.172 4.172 21 C -0.072 4.072 22 C -0.184 4.184 23 C 0.170 3.830 24 H 0.277 0.723 25 H 0.119 0.881 26 H 0.120 0.880 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.896 -16.242 -0.667 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.160 1.160 7 C -0.676 4.676 8 H 0.084 0.916 9 S 0.058 5.942 10 C -0.257 4.257 11 C 0.325 3.675 12 O -0.403 6.403 13 N -0.273 5.273 14 C -0.034 4.034 15 C -0.164 4.164 16 C -0.113 4.113 17 C -0.159 4.159 18 C 0.085 3.915 19 F -0.116 7.116 20 C -0.192 4.192 21 C -0.091 4.091 22 C -0.204 4.204 23 C 0.075 3.925 24 H 0.087 0.913 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.126 0.874 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.140 0.860 31 H 0.109 0.891 32 H 0.113 0.887 33 H 0.176 0.824 34 H 0.174 0.826 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 17.751 -14.816 -0.588 23.129 hybrid contribution -1.057 -0.353 -0.010 1.115 sum 16.694 -15.169 -0.597 22.564 Atomic orbital electron populations 1.70012 1.07290 1.29038 1.49019 1.25524 0.95222 1.02165 0.92878 0.85908 0.80746 0.79766 0.80228 1.18668 1.18462 1.15978 1.22432 0.89992 0.96803 1.58371 0.91616 1.84718 1.06774 1.05136 1.97596 1.23293 0.94208 1.00394 1.07799 1.20277 0.90312 0.81873 0.75085 1.90523 1.58204 1.43662 1.47914 1.45766 1.05466 1.07264 1.68837 1.22476 0.93084 0.84984 1.02891 1.21874 0.97021 0.99237 0.98277 1.20420 0.94364 0.93743 1.02749 1.19603 0.93540 0.95113 1.07686 1.17392 0.90937 0.80247 1.02904 1.91470 1.87069 1.39860 1.93151 1.21336 1.01402 0.91774 1.04674 1.21173 0.94209 0.97198 0.96498 1.22272 0.94609 1.00914 1.02625 1.17572 0.83124 0.93432 0.98329 0.91348 0.86330 0.86212 0.87409 0.88402 0.91766 0.86015 0.89126 0.88679 0.82395 0.82590 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.60 13.97 21.65 0.30 -54.30 16 2 C 0.05 2.73 5.50 84.86 0.47 3.20 16 3 Si 0.91 43.84 27.74 68.60 1.90 45.74 16 4 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.24 -11.29 6.74 99.48 0.67 -10.62 16 7 C -0.53 -29.71 10.04 67.96 0.68 -29.03 16 8 H 0.07 3.88 8.03 -2.91 -0.02 3.85 16 9 S -0.17 -8.18 18.55 -56.49 -1.05 -9.23 16 10 C -0.11 -3.81 4.57 71.24 0.33 -3.48 16 11 C 0.53 18.28 7.57 87.66 0.66 18.94 16 12 O -0.53 -21.36 12.55 -3.05 -0.04 -21.40 16 13 N -0.55 -14.77 2.97 -629.35 -1.87 -16.64 16 14 C 0.09 1.55 6.16 86.44 0.53 2.09 16 15 C -0.13 -1.80 6.11 30.69 0.19 -1.61 16 16 C -0.08 -1.20 5.49 29.76 0.16 -1.04 16 17 C -0.16 -3.49 5.77 -19.71 -0.11 -3.60 16 18 C 0.10 2.27 7.23 22.42 0.16 2.44 16 19 F -0.14 -2.84 16.53 44.97 0.74 -2.09 16 20 C -0.17 -3.40 10.01 22.30 0.22 -3.18 16 21 C -0.07 -1.59 10.04 22.23 0.22 -1.37 16 22 C -0.18 -5.27 8.87 22.42 0.20 -5.07 16 23 C 0.17 4.61 6.31 38.07 0.24 4.85 16 24 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.12 3.83 8.06 -2.39 -0.02 3.81 16 26 H 0.12 3.89 7.60 -2.39 -0.02 3.87 16 27 H 0.11 1.79 6.27 -2.39 -0.01 1.77 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.30 7.83 -2.39 -0.02 1.28 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 35 H 0.15 5.09 4.97 -21.19 -0.11 4.98 16 Total: -1.00 -69.44 306.69 4.94 -64.50 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.99 Total: 10.28 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 3.96 Total: -16.87 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.57 Total: -70.94 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.04 Total: -21.40 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.74 Total: -2.09 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.90 Total: 45.74 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.05 Total: -9.23 kcal Total: -69.44 4.94 -64.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000531131845.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.391 kcal (2) G-P(sol) polarization free energy of solvation -69.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds