Wall clock time and date at job start Tue Mar 31 2020 07:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39845 * 120.06647 * 125.21149 * 3 2 1 5 5 C 1.37612 * 119.92195 * 180.02562 * 4 3 2 6 6 C 1.39250 * 120.07408 * 359.97438 * 5 4 3 7 7 S 1.76201 * 119.92987 * 179.97438 * 6 5 4 8 8 C 1.81403 * 103.00133 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47467 * 180.02562 * 8 7 6 10 10 C 1.38633 * 119.74509 * 269.73080 * 9 8 7 11 11 C 1.37623 * 120.25029 * 179.71921 * 10 9 8 12 12 C 1.40721 * 119.73674 * 0.56891 * 11 10 9 13 13 C 1.41398 * 120.23943 * 179.68518 * 12 11 10 14 14 H 1.08003 * 119.99649 * 204.40663 * 13 12 11 15 15 C 1.39946 * 120.00192 * 24.39882 * 13 12 11 16 16 N 1.30824 * 120.00067 * 17.85428 * 15 13 12 17 17 Si 1.86801 * 120.00039 * 197.84770 * 15 13 12 18 18 H 1.48503 * 109.46985 * 90.00577 * 17 15 13 19 19 H 1.48496 * 109.47214 * 210.00273 * 17 15 13 20 20 H 1.48494 * 109.47179 * 330.00745 * 17 15 13 21 21 C 1.40714 * 119.51725 * 359.69976 * 12 11 10 22 22 C 1.37615 * 119.74208 * 0.02562 * 21 12 11 23 23 C 1.39260 * 120.14034 * 0.28031 * 6 5 4 24 24 C 1.37607 * 120.06794 * 359.43961 * 23 6 5 25 25 H 1.07997 * 120.04149 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.96109 * 179.97438 * 5 4 3 27 27 H 1.09009 * 109.46830 * 300.00323 * 8 7 6 28 28 H 1.09004 * 109.46983 * 59.99744 * 8 7 6 29 29 H 1.08007 * 119.87872 * 359.96996 * 10 9 8 30 30 H 1.07993 * 120.13543 * 180.27348 * 11 10 9 31 31 H 0.96993 * 120.00218 * 179.97438 * 16 15 13 32 32 H 1.07997 * 120.12645 * 179.97438 * 21 12 11 33 33 H 1.07999 * 119.87631 * 179.97438 * 22 21 12 34 34 H 1.07997 * 119.96510 * 179.72102 * 23 6 5 35 35 H 1.07998 * 120.03281 * 180.27799 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2683 0.6988 -0.9888 5 6 4.6444 0.6970 -0.9863 6 6 5.3395 0.0015 -0.0003 7 16 7.1015 0.0011 -0.0011 8 6 7.5101 -1.0181 1.4428 9 6 9.0075 -1.1158 1.5814 10 6 9.6903 -2.1470 0.9550 11 6 11.0584 -2.2429 1.0698 12 6 11.7626 -1.2960 1.8364 13 6 13.1675 -1.3882 1.9670 14 1 13.6603 -0.9491 2.8218 15 6 13.9193 -2.0487 0.9887 16 7 13.4038 -2.2715 -0.1928 17 14 15.6591 -2.6119 1.3699 18 1 15.6237 -3.9911 1.9195 19 1 16.4686 -2.5959 0.1251 20 1 16.2681 -1.6968 2.3682 21 6 11.0584 -0.2568 2.4723 22 6 9.6910 -0.1773 2.3389 23 6 4.6450 -0.6991 0.9826 24 6 3.2689 -0.6965 0.9890 25 1 2.7298 1.2381 -1.7541 26 1 5.1859 1.2356 -1.7499 27 1 7.0915 -0.5616 2.3399 28 1 7.0908 -2.0160 1.3135 29 1 9.1471 -2.8756 0.3714 30 1 11.5889 -3.0444 0.5775 31 1 13.9250 -2.7289 -0.8710 32 1 11.5889 0.4750 3.0633 33 1 9.1484 0.6191 2.8264 34 1 5.1869 -1.2413 1.7434 35 1 2.7309 -1.2363 1.7542 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543153158.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:50 Heat of formation + Delta-G solvation = 59.676495 kcal Electronic energy + Delta-G solvation = -18551.230417 eV Core-core repulsion = 15604.434868 eV Total energy + Delta-G solvation = -2946.795549 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.39908 -37.78148 -36.55251 -34.17012 -31.84728 -31.45601 -31.08761 -29.46213 -27.72416 -24.51024 -23.98961 -22.74890 -21.17434 -20.21026 -19.11051 -17.57059 -17.46534 -15.70893 -15.47461 -15.02404 -14.81768 -14.38573 -14.30671 -14.08838 -13.96793 -13.66361 -13.37710 -12.97970 -12.87168 -12.66171 -12.22876 -12.19140 -12.10542 -11.63865 -11.39440 -11.21561 -11.14977 -10.69588 -10.60931 -10.00767 -9.82523 -9.75819 -9.54614 -9.30899 -9.27155 -7.64351 -7.47342 -7.28387 -6.93963 -4.51877 0.50101 1.13256 1.53572 2.48223 2.50375 2.70959 2.82259 2.93366 2.98821 3.01566 3.21343 3.64950 3.73353 3.80135 4.47148 4.60003 4.62673 5.05773 5.24383 5.34728 5.35259 5.45415 5.58620 5.71598 5.86295 5.95508 6.07171 6.08564 6.17136 6.22660 6.51216 6.80110 6.90024 7.09019 7.17530 7.30155 7.43520 7.65577 7.88270 7.90633 8.11256 8.46080 8.70767 8.78457 9.99349 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.050493 B = 0.002487 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.396295 B =11253.914269 C =11384.809715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.263 3.737 3 C -0.059 4.059 4 C -0.048 4.048 5 C -0.113 4.113 6 C -0.050 4.050 7 S -0.111 6.111 8 C -0.026 4.026 9 C -0.221 4.221 10 C -0.077 4.077 11 C -0.168 4.168 12 C 0.118 3.882 13 C -0.451 4.451 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.782 5.782 17 Si 0.911 3.089 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.228 4.228 22 C -0.064 4.064 23 C -0.144 4.144 24 C -0.045 4.045 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.120 0.880 31 H 0.284 0.716 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.135 0.865 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.617 1.773 -0.248 10.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.052 4.052 3 C -0.067 4.067 4 C -0.071 4.071 5 C -0.138 4.138 6 C -0.165 4.165 7 S 0.144 5.856 8 C -0.172 4.172 9 C -0.226 4.226 10 C -0.097 4.097 11 C -0.188 4.188 12 C 0.114 3.886 13 C -0.481 4.481 14 H 0.099 0.901 15 C -0.145 4.145 16 N -0.406 5.406 17 Si 0.735 3.265 18 H -0.191 1.191 19 H -0.202 1.202 20 H -0.185 1.185 21 C -0.248 4.248 22 C -0.084 4.084 23 C -0.169 4.169 24 C -0.068 4.068 25 H 0.151 0.849 26 H 0.155 0.845 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.153 0.847 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.448 2.216 -1.253 11.728 hybrid contribution 0.344 -0.829 0.843 1.231 sum -11.104 1.388 -0.411 11.198 Atomic orbital electron populations 1.81241 1.12151 1.09108 1.08305 1.25747 0.92651 0.93343 0.93452 1.15969 0.84095 1.06098 1.00502 1.21036 0.93736 0.96042 0.96295 1.20726 0.93209 1.00884 0.98940 1.22635 0.99887 0.97290 0.96683 1.86487 0.94717 1.64305 1.40098 1.22405 0.99019 1.00018 0.95788 1.18302 0.90198 1.02969 1.11107 1.20528 0.94736 0.96597 0.97830 1.21305 0.92090 1.00957 1.04434 1.17702 0.93236 0.88852 0.88786 1.19724 0.91928 1.30104 1.06304 0.90068 1.25992 1.01074 0.93495 0.93982 1.69817 1.38678 1.29465 1.02624 0.86254 0.81012 0.80120 0.79090 1.19104 1.20155 1.18464 1.20965 0.93398 1.01006 1.09402 1.20381 0.94308 0.96338 0.97415 1.21169 0.94029 1.01906 0.99781 1.21020 0.93770 0.95796 0.96182 0.84878 0.84546 0.90175 0.90124 0.89193 0.86224 0.90506 0.88680 0.89158 0.84692 0.85014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.65 18.54 41.84 0.78 -4.87 16 2 C 0.26 2.88 15.33 -22.47 -0.34 2.53 16 3 C -0.06 -0.57 5.74 -106.77 -0.61 -1.19 16 4 C -0.05 -0.44 9.75 -39.21 -0.38 -0.82 16 5 C -0.11 -1.17 9.77 -39.43 -0.39 -1.55 16 6 C -0.05 -0.60 6.13 -38.83 -0.24 -0.84 16 7 S -0.11 -1.65 21.90 -107.50 -2.35 -4.01 16 8 C -0.03 -0.40 4.45 36.00 0.16 -0.24 16 9 C -0.22 -4.32 5.16 -104.33 -0.54 -4.86 16 10 C -0.08 -1.64 9.67 -39.66 -0.38 -2.02 16 11 C -0.17 -4.07 8.70 -38.87 -0.34 -4.41 16 12 C 0.12 2.93 5.58 -106.82 -0.60 2.34 16 13 C -0.45 -11.21 9.05 -37.74 -0.34 -11.55 16 14 H 0.08 1.93 7.91 -52.48 -0.41 1.52 16 15 C 0.07 1.75 5.14 -17.34 -0.09 1.66 16 16 N -0.78 -19.03 10.95 55.55 0.61 -18.42 16 17 Si 0.91 17.50 29.60 -169.99 -5.03 12.47 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 21 C -0.23 -5.20 9.80 -38.87 -0.38 -5.58 16 22 C -0.06 -1.31 9.67 -39.66 -0.38 -1.70 16 23 C -0.14 -1.52 9.34 -39.43 -0.37 -1.89 16 24 C -0.05 -0.42 9.74 -39.21 -0.38 -0.80 16 25 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 26 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 27 H 0.08 1.09 7.69 -51.92 -0.40 0.69 16 28 H 0.08 1.12 7.67 -51.92 -0.40 0.72 16 29 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 30 H 0.12 3.00 6.15 -52.49 -0.32 2.68 16 31 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 32 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 34 H 0.14 1.32 5.86 -52.49 -0.31 1.01 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -26.13 327.24 -10.19 -36.31 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.51 Total: 4.49 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: -5.60 Total: -30.91 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 1.38 Total: -23.29 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.35 Total: -4.01 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.13 -10.19 -36.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543153158.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.990 kcal (2) G-P(sol) polarization free energy of solvation -26.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds