Wall clock time and date at job start Tue Mar 31 2020 07:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39697 * 120.10660 * 192.36266 * 3 2 1 5 5 C 1.37992 * 120.00656 * 179.97438 * 4 3 2 6 6 C 1.38225 * 120.23698 * 359.76389 * 5 4 3 7 7 C 1.39048 * 120.22783 * 0.51021 * 6 5 4 8 8 S 1.76206 * 120.00518 * 179.74022 * 7 6 5 9 9 C 1.81401 * 102.99997 * 359.72908 * 8 7 6 10 10 C 1.50700 * 109.46824 * 179.97438 * 9 8 7 11 11 C 1.38635 * 119.75016 * 90.00565 * 10 9 8 12 12 C 1.37614 * 120.25051 * 179.69933 * 11 10 9 13 13 C 1.40719 * 119.74235 * 0.27218 * 12 11 10 14 14 C 1.41399 * 120.24181 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00238 * 335.28948 * 14 13 12 16 16 C 1.39942 * 119.99857 * 155.28388 * 14 13 12 17 17 N 1.30828 * 120.00153 * 342.23392 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 162.23135 * 16 14 13 19 19 H 1.48497 * 109.47389 * 94.66616 * 18 16 14 20 20 H 1.48504 * 109.47380 * 214.66797 * 18 16 14 21 21 H 1.48503 * 109.47148 * 334.66387 * 18 16 14 22 22 C 1.40710 * 119.51464 * 0.02562 * 13 12 11 23 23 C 1.37618 * 119.74455 * 359.97438 * 22 13 12 24 24 C 1.38725 * 119.98585 * 359.47168 * 7 6 5 25 25 H 1.07999 * 119.99869 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.87915 * 180.02562 * 5 4 3 27 27 H 1.08004 * 119.88425 * 180.25731 * 6 5 4 28 28 H 1.09005 * 109.47229 * 60.00084 * 9 8 7 29 29 H 1.08991 * 109.47273 * 300.00010 * 9 8 7 30 30 H 1.08000 * 119.86943 * 359.97276 * 11 10 9 31 31 H 1.07991 * 120.13000 * 180.29057 * 12 11 10 32 32 H 0.97000 * 119.99938 * 179.97438 * 17 16 14 33 33 H 1.07999 * 120.13173 * 180.02562 * 22 13 12 34 34 H 1.08001 * 119.87978 * 180.02562 * 23 22 13 35 35 H 1.08003 * 120.11654 * 180.25529 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.1814 0.2587 5 6 4.6481 1.1796 0.2587 6 6 5.3426 0.0111 0.0081 7 6 4.6556 -1.1686 -0.2562 8 16 5.5469 -2.6534 -0.5816 9 6 7.2781 -2.1239 -0.4656 10 6 8.1819 -3.3019 -0.7232 11 6 8.5948 -3.5824 -2.0166 12 6 9.4251 -4.6519 -2.2627 13 6 9.8505 -5.4654 -1.1962 14 6 10.7041 -6.5666 -1.4370 15 1 10.7201 -7.0348 -2.4101 16 6 11.5282 -7.0498 -0.4144 17 7 11.7788 -6.3043 0.6311 18 14 12.2704 -8.7592 -0.5420 19 1 13.6339 -8.6648 -1.1226 20 1 12.3493 -9.3670 0.8106 21 1 11.4179 -9.6050 -1.4157 22 6 9.4201 -5.1749 0.1116 23 6 8.5898 -4.1003 0.3343 24 6 3.2684 -1.1775 -0.2581 25 1 2.7295 2.0959 0.4588 26 1 5.1874 2.0936 0.4595 27 1 6.4226 0.0152 0.0137 28 1 7.4713 -1.7294 0.5320 29 1 7.4712 -1.3484 -1.2067 30 1 8.2670 -2.9566 -2.8335 31 1 9.7492 -4.8658 -3.2704 32 1 12.3497 -6.6394 1.3401 33 1 9.7408 -5.7924 0.9376 34 1 8.2585 -3.8751 1.3373 35 1 2.7327 -2.0935 -0.4591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544072882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:12 Heat of formation + Delta-G solvation = 60.457847 kcal Electronic energy + Delta-G solvation = -18567.971812 eV Core-core repulsion = 15621.210145 eV Total energy + Delta-G solvation = -2946.761667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44745 -37.76726 -36.60728 -34.15465 -31.92115 -31.31877 -31.19124 -29.44929 -27.72839 -24.50533 -23.82408 -22.94116 -21.15944 -20.20955 -19.42031 -17.45348 -16.61820 -16.23584 -15.62760 -15.43521 -14.55312 -14.36279 -14.31229 -14.08592 -14.00076 -13.68416 -13.30708 -13.02986 -12.86165 -12.64581 -12.22600 -12.09165 -11.92051 -11.71601 -11.66525 -11.16807 -11.04008 -10.81954 -10.51128 -10.03140 -9.89021 -9.77860 -9.54391 -9.24819 -9.22819 -7.62828 -7.45622 -7.26669 -6.93364 -4.50543 0.52734 1.02693 1.53683 2.42805 2.55432 2.70066 2.83306 2.94679 2.99313 3.03997 3.22420 3.61653 3.64949 3.81203 4.48467 4.60739 4.75903 4.90614 5.17411 5.34571 5.37048 5.47345 5.57451 5.60344 5.91848 5.98366 6.01787 6.09512 6.18541 6.24302 6.48036 6.81383 6.90996 7.10308 7.18687 7.24311 7.44970 7.66962 7.89610 7.92018 8.12553 8.47264 8.72060 8.79766 10.00167 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.040441 B = 0.002557 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.196514 B =10946.011779 C =11123.736655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.260 3.740 3 C -0.014 4.014 4 C -0.089 4.089 5 C -0.099 4.099 6 C -0.109 4.109 7 C -0.081 4.081 8 S -0.123 6.123 9 C -0.023 4.023 10 C -0.220 4.220 11 C -0.064 4.064 12 C -0.228 4.228 13 C 0.118 3.882 14 C -0.452 4.452 15 H 0.081 0.919 16 C 0.075 3.925 17 N -0.784 5.784 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.168 4.168 23 C -0.076 4.076 24 C -0.060 4.060 25 H 0.131 0.869 26 H 0.134 0.866 27 H 0.133 0.867 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.283 0.717 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.391 10.310 0.901 12.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.055 4.055 3 C -0.020 4.020 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.135 4.135 7 C -0.194 4.194 8 S 0.129 5.871 9 C -0.169 4.169 10 C -0.224 4.224 11 C -0.084 4.084 12 C -0.248 4.248 13 C 0.115 3.885 14 C -0.481 4.481 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.408 5.408 18 Si 0.733 3.267 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.188 4.188 23 C -0.097 4.097 24 C -0.087 4.087 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.393 9.147 0.872 13.140 hybrid contribution 1.334 0.563 0.322 1.484 sum -8.059 9.710 1.193 12.675 Atomic orbital electron populations 1.81244 1.12060 1.07504 1.08911 1.25710 0.92631 0.93620 0.93571 1.15855 0.84066 0.95308 1.06725 1.21082 0.94351 0.96499 0.99409 1.20990 0.93498 0.98177 0.99166 1.21515 1.00633 0.91913 0.99404 1.22101 0.96438 0.98940 1.01914 1.86378 1.04295 1.10135 1.86273 1.22355 0.90635 1.00073 1.03823 1.18305 1.08142 1.01521 0.94480 1.20377 0.96934 0.96792 0.94319 1.20963 1.06761 0.98798 0.98276 1.17696 0.89055 0.90404 0.91355 1.19707 1.18266 1.11920 0.98220 0.90097 1.25981 0.95327 0.98850 0.94282 1.69817 1.27680 1.35770 1.07551 0.86273 0.79677 0.81825 0.78900 1.19421 1.19871 1.18253 1.21294 1.00336 0.99142 0.97988 1.20526 0.97572 0.95506 0.96054 1.20786 0.92210 0.97067 0.98601 0.85112 0.84795 0.84916 0.90209 0.90277 0.89158 0.88687 0.90568 0.86275 0.89185 0.84666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.62 18.54 41.84 0.78 -4.85 16 2 C 0.26 2.94 15.33 -22.47 -0.34 2.59 16 3 C -0.01 -0.14 5.73 -106.96 -0.61 -0.76 16 4 C -0.09 -0.74 9.75 -39.13 -0.38 -1.12 16 5 C -0.10 -0.80 10.02 -39.68 -0.40 -1.20 16 6 C -0.11 -1.12 9.36 -39.29 -0.37 -1.49 16 7 C -0.08 -0.98 6.11 -39.10 -0.24 -1.22 16 8 S -0.12 -1.84 21.90 -107.50 -2.35 -4.20 16 9 C -0.02 -0.35 4.45 36.01 0.16 -0.19 16 10 C -0.22 -4.34 5.16 -104.33 -0.54 -4.88 16 11 C -0.06 -1.32 9.67 -39.66 -0.38 -1.70 16 12 C -0.23 -5.24 9.80 -38.87 -0.38 -5.62 16 13 C 0.12 2.97 5.57 -106.82 -0.60 2.38 16 14 C -0.45 -11.31 9.05 -37.74 -0.34 -11.65 16 15 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 16 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 17 N -0.78 -19.08 10.97 55.55 0.61 -18.47 16 18 Si 0.91 17.61 29.59 -169.99 -5.03 12.57 16 19 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.17 -4.09 8.70 -38.87 -0.34 -4.43 16 23 C -0.08 -1.65 9.67 -39.66 -0.38 -2.03 16 24 C -0.06 -0.67 9.50 -38.94 -0.37 -1.04 16 25 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 26 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 27 H 0.13 1.28 5.86 -52.48 -0.31 0.97 16 28 H 0.08 1.13 7.67 -51.92 -0.40 0.73 16 29 H 0.08 1.09 7.69 -51.93 -0.40 0.69 16 30 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 33 H 0.12 3.01 6.18 -52.49 -0.32 2.68 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -26.23 327.26 -10.19 -36.42 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -3.52 Total: 4.26 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -5.60 Total: -30.67 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 1.38 Total: -23.32 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.35 Total: -4.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -26.23 -10.19 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544072882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.878 kcal (2) G-P(sol) polarization free energy of solvation -26.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds