Wall clock time and date at job start Tue Mar 31 2020 07:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39697 * 120.10660 * 192.36266 * 3 2 1 5 5 C 1.37992 * 120.00656 * 179.97438 * 4 3 2 6 6 C 1.38225 * 120.23698 * 359.76389 * 5 4 3 7 7 C 1.39048 * 120.22783 * 0.51021 * 6 5 4 8 8 S 1.76206 * 120.00518 * 179.74022 * 7 6 5 9 9 C 1.81401 * 102.99997 * 359.72908 * 8 7 6 10 10 C 1.50700 * 109.46824 * 179.97438 * 9 8 7 11 11 C 1.38635 * 119.75016 * 90.00565 * 10 9 8 12 12 C 1.37614 * 120.25051 * 179.69933 * 11 10 9 13 13 C 1.40719 * 119.74235 * 0.27218 * 12 11 10 14 14 C 1.41399 * 120.24181 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00238 * 335.28948 * 14 13 12 16 16 C 1.39942 * 119.99857 * 155.28388 * 14 13 12 17 17 N 1.30828 * 120.00153 * 342.23392 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 162.23135 * 16 14 13 19 19 H 1.48497 * 109.47389 * 94.66616 * 18 16 14 20 20 H 1.48504 * 109.47380 * 214.66797 * 18 16 14 21 21 H 1.48503 * 109.47148 * 334.66387 * 18 16 14 22 22 C 1.40710 * 119.51464 * 0.02562 * 13 12 11 23 23 C 1.37618 * 119.74455 * 359.97438 * 22 13 12 24 24 C 1.38725 * 119.98585 * 359.47168 * 7 6 5 25 25 H 1.07999 * 119.99869 * 359.97438 * 4 3 2 26 26 H 1.08004 * 119.87915 * 180.02562 * 5 4 3 27 27 H 1.08004 * 119.88425 * 180.25731 * 6 5 4 28 28 H 1.09005 * 109.47229 * 60.00084 * 9 8 7 29 29 H 1.08991 * 109.47273 * 300.00010 * 9 8 7 30 30 H 1.08000 * 119.86943 * 359.97276 * 11 10 9 31 31 H 1.07991 * 120.13000 * 180.29057 * 12 11 10 32 32 H 0.97000 * 119.99938 * 179.97438 * 17 16 14 33 33 H 1.07999 * 120.13173 * 180.02562 * 22 13 12 34 34 H 1.08001 * 119.87978 * 180.02562 * 23 22 13 35 35 H 1.08003 * 120.11654 * 180.25529 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 1.1814 0.2587 5 6 4.6481 1.1796 0.2587 6 6 5.3426 0.0111 0.0081 7 6 4.6556 -1.1686 -0.2562 8 16 5.5469 -2.6534 -0.5816 9 6 7.2781 -2.1239 -0.4656 10 6 8.1819 -3.3019 -0.7232 11 6 8.5948 -3.5824 -2.0166 12 6 9.4251 -4.6519 -2.2627 13 6 9.8505 -5.4654 -1.1962 14 6 10.7041 -6.5666 -1.4370 15 1 10.7201 -7.0348 -2.4101 16 6 11.5282 -7.0498 -0.4144 17 7 11.7788 -6.3043 0.6311 18 14 12.2704 -8.7592 -0.5420 19 1 13.6339 -8.6648 -1.1226 20 1 12.3493 -9.3670 0.8106 21 1 11.4179 -9.6050 -1.4157 22 6 9.4201 -5.1749 0.1116 23 6 8.5898 -4.1003 0.3343 24 6 3.2684 -1.1775 -0.2581 25 1 2.7295 2.0959 0.4588 26 1 5.1874 2.0936 0.4595 27 1 6.4226 0.0152 0.0137 28 1 7.4713 -1.7294 0.5320 29 1 7.4712 -1.3484 -1.2067 30 1 8.2670 -2.9566 -2.8335 31 1 9.7492 -4.8658 -3.2704 32 1 12.3497 -6.6394 1.3401 33 1 9.7408 -5.7924 0.9376 34 1 8.2585 -3.8751 1.3373 35 1 2.7327 -2.0935 -0.4591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544072882.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:11 Heat of formation + Delta-G solvation = 50.828135 kcal Electronic energy + Delta-G solvation = -18568.389387 eV Core-core repulsion = 15621.210145 eV Total energy + Delta-G solvation = -2947.179243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 295.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.24153 -39.47796 -37.53760 -35.86051 -33.19462 -32.38282 -32.07826 -31.18778 -29.31590 -25.96121 -24.77414 -23.83121 -22.90357 -21.83218 -20.28711 -19.23442 -17.52599 -17.29520 -17.08310 -16.44367 -15.98361 -15.70706 -15.63992 -15.23860 -15.16403 -14.70381 -14.33398 -14.15204 -14.02882 -13.93658 -13.80710 -13.47319 -13.33636 -12.93754 -12.73353 -12.60340 -12.48439 -12.30779 -12.05778 -11.54090 -11.29455 -11.12475 -10.92558 -10.71518 -10.00809 -9.37140 -9.19390 -8.66718 -8.35483 -6.34307 -0.26605 0.25648 0.31808 1.09860 1.16966 1.39080 1.45809 1.53319 1.59395 1.75418 1.86278 2.20278 2.74889 2.80129 2.82314 3.75044 3.88599 4.06749 4.12655 4.13651 4.15373 4.45163 4.53321 4.58550 4.60346 4.70887 4.85788 5.05433 5.14439 5.15569 5.27727 5.34994 5.36405 5.43487 5.69248 5.76737 5.93366 6.09368 6.17740 6.36856 6.37109 6.68500 6.92121 7.01109 8.29768 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.040441 B = 0.002557 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.196514 B =10946.011779 C =11123.736655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.281 3.719 3 C -0.021 4.021 4 C -0.071 4.071 5 C -0.090 4.090 6 C -0.109 4.109 7 C -0.093 4.093 8 S -0.157 6.157 9 C -0.016 4.016 10 C -0.203 4.203 11 C -0.068 4.068 12 C -0.245 4.245 13 C 0.085 3.915 14 C -0.495 4.495 15 H 0.076 0.924 16 C 0.036 3.964 17 N -0.819 5.819 18 Si 0.980 3.020 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.260 1.260 22 C -0.193 4.193 23 C -0.082 4.082 24 C -0.064 4.064 25 H 0.160 0.840 26 H 0.170 0.830 27 H 0.142 0.858 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.290 0.710 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 12.986 1.210 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.033 4.033 3 C -0.026 4.026 4 C -0.094 4.094 5 C -0.109 4.109 6 C -0.133 4.133 7 C -0.206 4.206 8 S 0.092 5.908 9 C -0.163 4.163 10 C -0.207 4.207 11 C -0.088 4.088 12 C -0.265 4.265 13 C 0.082 3.918 14 C -0.525 4.525 15 H 0.094 0.906 16 C -0.180 4.180 17 N -0.444 5.444 18 Si 0.800 3.200 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.184 1.184 22 C -0.213 4.213 23 C -0.102 4.102 24 C -0.091 4.091 25 H 0.178 0.822 26 H 0.188 0.812 27 H 0.159 0.841 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.138 0.862 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.258 11.838 1.175 15.709 hybrid contribution 1.357 0.051 0.244 1.380 sum -8.901 11.889 1.419 14.920 Atomic orbital electron populations 1.81272 1.13226 1.08761 1.10457 1.25831 0.92675 0.92460 0.92377 1.15867 0.83255 0.95752 1.07735 1.21485 0.94658 0.96653 0.96636 1.21365 0.93398 0.98625 0.97517 1.21755 1.01270 0.91841 0.98467 1.21858 0.96321 0.97908 1.04485 1.86382 1.04027 1.12684 1.87715 1.22258 0.89946 0.98471 1.05611 1.18692 1.07033 1.01480 0.93474 1.20708 0.96052 0.96258 0.95744 1.21173 1.07644 0.99628 0.98078 1.18021 0.90075 0.91413 0.92301 1.19898 1.20171 1.13511 0.98896 0.90590 1.26752 0.95299 1.02276 0.93647 1.69862 1.28763 1.37394 1.08408 0.85225 0.78821 0.76885 0.79025 1.18621 1.18998 1.18399 1.21263 1.02047 1.00548 0.97414 1.20780 0.96856 0.94909 0.97675 1.20764 0.92053 0.97557 0.98721 0.82211 0.81233 0.84051 0.88508 0.88010 0.86219 0.88387 0.89977 0.88163 0.87369 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.71 18.54 19.00 0.35 -11.36 16 2 C 0.28 5.79 15.33 88.33 1.35 7.14 16 3 C -0.02 -0.36 5.73 -21.38 -0.12 -0.48 16 4 C -0.07 -0.84 9.75 22.56 0.22 -0.62 16 5 C -0.09 -0.99 10.02 22.21 0.22 -0.76 16 6 C -0.11 -1.78 9.36 22.46 0.21 -1.57 16 7 C -0.09 -2.00 6.11 22.58 0.14 -1.86 16 8 S -0.16 -4.42 21.90 -56.49 -1.24 -5.66 16 9 C -0.02 -0.46 4.45 71.24 0.32 -0.14 16 10 C -0.20 -7.77 5.16 -19.67 -0.10 -7.87 16 11 C -0.07 -2.74 9.67 22.22 0.21 -2.53 16 12 C -0.25 -11.58 9.80 22.73 0.22 -11.36 16 13 C 0.08 4.46 5.57 -21.29 -0.12 4.35 16 14 C -0.50 -26.17 9.05 23.46 0.21 -25.96 16 15 H 0.08 3.88 7.91 -2.91 -0.02 3.86 16 16 C 0.04 1.77 5.14 85.26 0.44 2.21 16 17 N -0.82 -41.61 10.97 21.83 0.24 -41.37 16 18 Si 0.98 37.25 29.59 68.60 2.03 39.28 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 22 C -0.19 -9.81 8.70 22.73 0.20 -9.61 16 23 C -0.08 -3.56 9.67 22.22 0.21 -3.34 16 24 C -0.06 -1.30 9.50 22.68 0.22 -1.08 16 25 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 26 H 0.17 0.76 8.06 -2.91 -0.02 0.73 16 27 H 0.14 2.07 5.86 -2.91 -0.02 2.06 16 28 H 0.10 2.40 7.67 -2.39 -0.02 2.38 16 29 H 0.10 2.41 7.69 -2.39 -0.02 2.39 16 30 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 31 H 0.10 4.40 8.06 -2.92 -0.02 4.37 16 32 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 33 H 0.10 5.37 6.18 -2.91 -0.02 5.35 16 34 H 0.11 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.13 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -60.28 327.26 6.34 -53.95 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 1.12 Total: 18.63 kcal Atomic # 6 Polarization: -57.31 SS G_CDS: 3.83 Total: -53.47 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.59 Total: -52.73 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 16 Polarization: -4.42 SS G_CDS: -1.24 Total: -5.66 kcal Total: -60.28 6.34 -53.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544072882.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.775 kcal (2) G-P(sol) polarization free energy of solvation -60.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds