Wall clock time and date at job start Tue Mar 31 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47069 * 269.99608 * 3 2 1 5 5 H 1.48498 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48504 * 109.47041 * 149.99653 * 3 2 1 7 7 C 1.37874 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99906 * 0.02562 * 7 2 1 10 10 O 1.42902 * 113.28076 * 313.05601 * 9 7 2 11 11 C 1.53504 * 114.20546 * 179.97438 * 9 7 2 12 12 N 1.47065 * 87.98293 * 220.14499 * 11 9 7 13 13 C 1.34777 * 136.05315 * 207.08583 * 12 11 9 14 14 O 1.21622 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.47172 * 119.99829 * 180.02562 * 13 12 11 16 16 S 1.77337 * 128.47542 * 0.10285 * 15 13 12 17 17 N 1.56641 * 95.28281 * 180.23182 * 16 15 13 18 18 N 1.27334 * 109.74038 * 359.80734 * 17 16 15 19 19 C 1.31241 * 120.03978 * 0.02562 * 18 17 16 20 20 C 1.50697 * 124.05851 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49504 * 351.40541 * 20 19 18 22 22 C 1.52997 * 60.00347 * 107.48912 * 21 20 19 23 23 C 1.47063 * 87.88708 * 27.34176 * 12 11 9 24 24 H 0.97006 * 120.00114 * 0.02562 * 1 2 3 25 25 H 0.96698 * 113.99884 * 46.93904 * 10 9 7 26 26 H 1.09003 * 113.46396 * 105.36689 * 11 9 7 27 27 H 1.08998 * 113.51801 * 334.93331 * 11 9 7 28 28 H 1.08990 * 115.56356 * 205.71712 * 20 19 18 29 29 H 1.09002 * 117.49696 * 214.98125 * 21 20 19 30 30 H 1.09002 * 117.50343 * 0.02562 * 21 20 19 31 31 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 32 32 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 33 33 H 1.09003 * 113.46740 * 87.43480 * 23 12 11 34 34 H 1.08996 * 113.46944 * 217.87475 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.1920 -2.5399 0.9593 11 6 2.1487 -3.7443 0.0005 12 7 1.2071 -4.3593 -0.9470 13 6 0.8316 -5.6139 -1.2656 14 8 1.3299 -6.5625 -0.6901 15 6 -0.1805 -5.8362 -2.3107 16 16 -1.0420 -4.6316 -3.2862 17 7 -1.8845 -5.6762 -4.0942 18 7 -1.5878 -6.8546 -3.7139 19 6 -0.6908 -7.0350 -2.7729 20 6 -0.2717 -8.3864 -2.2543 21 6 -1.0759 -9.6020 -2.7197 22 6 0.3381 -9.3694 -3.2559 23 6 0.8603 -3.0034 -1.3985 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3716 -1.7542 0.9564 26 1 2.1876 -4.2513 0.9647 27 1 3.1374 -3.5676 -0.4229 28 1 0.1166 -8.3997 -1.2360 29 1 -1.2166 -10.4150 -2.0074 30 1 -1.9078 -9.4243 -3.4013 31 1 0.4361 -9.0385 -4.2898 32 1 1.1278 -10.0290 -2.8964 33 1 1.5091 -2.6305 -2.1910 34 1 -0.1984 -2.8792 -1.6263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574492405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:09 Heat of formation + Delta-G solvation = 57.325137 kcal Electronic energy + Delta-G solvation = -21277.843943 eV Core-core repulsion = 17920.097168 eV Total energy + Delta-G solvation = -3357.746775 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93459 -39.71311 -37.57583 -36.91544 -34.19268 -32.31041 -31.82947 -29.24429 -27.19275 -25.50739 -25.36942 -23.50953 -22.40044 -21.79071 -20.20394 -18.64856 -18.03666 -17.56199 -16.60063 -16.17117 -15.85996 -15.43747 -15.16851 -14.68578 -14.41668 -14.28358 -13.44598 -13.09277 -12.87013 -12.75320 -12.16241 -12.09224 -11.84728 -11.68160 -11.58139 -11.18938 -11.16852 -11.12011 -10.61034 -10.46900 -10.41637 -10.11419 -9.88984 -9.68631 -9.40053 -9.35501 -8.90740 -8.57711 -8.09128 -6.51471 -4.62447 -0.12734 0.96094 1.61306 1.97513 3.08205 3.13556 3.17996 3.21416 3.28600 3.78538 3.99880 4.09661 4.43585 4.63873 4.78047 4.88800 4.99030 5.11999 5.39176 5.58743 5.62392 5.71297 5.82718 5.97009 6.08322 6.18624 6.20214 6.27524 6.39156 6.46574 6.94084 7.51994 7.66102 7.73195 8.14866 8.39295 8.42727 9.09512 9.35267 10.55531 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.004308 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.696281 B = 6498.235246 C = 7091.226807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.075 0.925 9 C 0.245 3.755 10 O -0.570 6.570 11 C 0.112 3.888 12 N -0.627 5.627 13 C 0.619 3.381 14 O -0.537 6.537 15 C -0.267 4.267 16 S 0.440 5.560 17 N -0.276 5.276 18 N -0.253 5.253 19 C 0.116 3.884 20 C -0.082 4.082 21 C -0.163 4.163 22 C -0.157 4.157 23 C 0.059 3.941 24 H 0.276 0.724 25 H 0.396 0.604 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.144 0.856 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 -8.367 -5.738 10.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.129 4.129 3 Si 0.737 3.263 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.093 0.907 9 C 0.203 3.797 10 O -0.383 6.383 11 C -0.009 4.009 12 N -0.360 5.360 13 C 0.406 3.594 14 O -0.417 6.417 15 C -0.408 4.408 16 S 0.577 5.423 17 N -0.256 5.256 18 N -0.119 5.119 19 C -0.031 4.031 20 C -0.104 4.104 21 C -0.200 4.200 22 C -0.195 4.195 23 C -0.065 4.065 24 H 0.086 0.914 25 H 0.252 0.748 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.162 0.838 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.457 -8.525 -6.645 10.907 hybrid contribution 0.769 0.644 0.487 1.115 sum -0.688 -7.881 -6.158 10.025 Atomic orbital electron populations 1.69245 1.06249 1.28467 1.49743 1.25079 0.95033 1.00031 0.92776 0.86286 0.79827 0.81713 0.78480 1.20199 1.20822 1.19442 1.21400 0.94004 0.89486 1.52497 0.90683 1.19532 0.85391 0.91151 0.83611 1.86055 1.45142 1.48543 1.58563 1.23416 0.93613 0.91799 0.92072 1.49637 1.42217 1.04130 1.40028 1.15832 0.80766 0.81973 0.80839 1.90741 1.56764 1.40559 1.53588 1.27744 1.08456 0.96811 1.07740 1.83049 1.22378 1.17549 1.19322 1.78686 1.23126 1.00276 1.23526 1.70515 1.15042 1.12764 1.13531 1.21857 0.92647 0.95793 0.92775 1.20596 1.05770 0.83256 1.00730 1.23046 0.95331 0.97992 1.03637 1.22979 0.96869 1.01093 0.98549 1.24601 1.00587 0.77562 1.03753 0.91381 0.74759 0.90915 0.89031 0.83791 0.88055 0.87670 0.88718 0.87812 0.89137 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.39 11.01 55.43 0.61 -20.78 16 2 C 0.07 1.72 5.39 -17.82 -0.10 1.63 16 3 Si 0.91 18.36 29.54 -169.99 -5.02 13.33 16 4 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.35 16 6 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 7 C -0.54 -12.49 8.70 -34.44 -0.30 -12.78 16 8 H 0.08 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 5.47 1.58 -91.12 -0.14 5.33 16 10 O -0.57 -13.86 13.55 -35.23 -0.48 -14.34 16 11 C 0.11 2.26 8.02 -8.50 -0.07 2.19 16 12 N -0.63 -12.44 3.69 -186.42 -0.69 -13.12 16 13 C 0.62 12.19 8.06 -12.63 -0.10 12.09 16 14 O -0.54 -11.39 15.74 5.26 0.08 -11.31 16 15 C -0.27 -4.65 6.78 -35.95 -0.24 -4.90 16 16 S 0.44 6.76 20.99 -107.50 -2.26 4.51 16 17 N -0.28 -4.49 12.51 60.35 0.75 -3.73 16 18 N -0.25 -4.16 10.95 33.42 0.37 -3.80 16 19 C 0.12 1.90 6.59 -82.84 -0.55 1.35 16 20 C -0.08 -1.16 5.64 -91.77 -0.52 -1.68 16 21 C -0.16 -1.83 10.11 -26.73 -0.27 -2.10 16 22 C -0.16 -1.80 10.23 -26.73 -0.27 -2.08 16 23 C 0.06 1.15 6.90 -8.37 -0.06 1.10 16 24 H 0.28 6.27 8.31 -40.82 -0.34 5.93 16 25 H 0.40 9.74 6.32 45.56 0.29 10.03 16 26 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 27 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 28 H 0.14 2.20 6.63 -51.93 -0.34 1.86 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.10 1.23 7.80 -51.93 -0.40 0.82 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 34 H 0.07 1.32 6.61 -51.93 -0.34 0.98 16 LS Contribution 309.55 15.07 4.66 4.66 Total: -1.00 -26.31 309.55 -7.46 -33.77 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -2.88 Total: 10.66 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.62 Total: 0.14 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 1.04 Total: -41.44 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.39 Total: -25.65 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.33 kcal Atomic # 16 Polarization: 6.76 SS G_CDS: -2.26 Total: 4.51 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.31 -7.46 -33.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574492405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.099 kcal (2) G-P(sol) polarization free energy of solvation -26.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds