Wall clock time and date at job start Tue Mar 31 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 120.00094 * 2 1 4 4 H 1.48501 * 109.47069 * 269.99608 * 3 2 1 5 5 H 1.48498 * 109.47010 * 29.99932 * 3 2 1 6 6 H 1.48504 * 109.47041 * 149.99653 * 3 2 1 7 7 C 1.37874 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00133 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99906 * 0.02562 * 7 2 1 10 10 O 1.42902 * 113.28076 * 313.05601 * 9 7 2 11 11 C 1.53504 * 114.20546 * 179.97438 * 9 7 2 12 12 N 1.47065 * 87.98293 * 220.14499 * 11 9 7 13 13 C 1.34777 * 136.05315 * 207.08583 * 12 11 9 14 14 O 1.21622 * 120.00295 * 359.97438 * 13 12 11 15 15 C 1.47172 * 119.99829 * 180.02562 * 13 12 11 16 16 S 1.77337 * 128.47542 * 0.10285 * 15 13 12 17 17 N 1.56641 * 95.28281 * 180.23182 * 16 15 13 18 18 N 1.27334 * 109.74038 * 359.80734 * 17 16 15 19 19 C 1.31241 * 120.03978 * 0.02562 * 18 17 16 20 20 C 1.50697 * 124.05851 * 179.97438 * 19 18 17 21 21 C 1.53000 * 117.49504 * 351.40541 * 20 19 18 22 22 C 1.52997 * 60.00347 * 107.48912 * 21 20 19 23 23 C 1.47063 * 87.88708 * 27.34176 * 12 11 9 24 24 H 0.97006 * 120.00114 * 0.02562 * 1 2 3 25 25 H 0.96698 * 113.99884 * 46.93904 * 10 9 7 26 26 H 1.09003 * 113.46396 * 105.36689 * 11 9 7 27 27 H 1.08998 * 113.51801 * 334.93331 * 11 9 7 28 28 H 1.08990 * 115.56356 * 205.71712 * 20 19 18 29 29 H 1.09002 * 117.49696 * 214.98125 * 21 20 19 30 30 H 1.09002 * 117.50343 * 0.02562 * 21 20 19 31 31 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 32 32 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 33 33 H 1.09003 * 113.46740 * 87.43480 * 23 12 11 34 34 H 1.08996 * 113.46944 * 217.87475 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 8 0.1920 -2.5399 0.9593 11 6 2.1487 -3.7443 0.0005 12 7 1.2071 -4.3593 -0.9470 13 6 0.8316 -5.6139 -1.2656 14 8 1.3299 -6.5625 -0.6901 15 6 -0.1805 -5.8362 -2.3107 16 16 -1.0420 -4.6316 -3.2862 17 7 -1.8845 -5.6762 -4.0942 18 7 -1.5878 -6.8546 -3.7139 19 6 -0.6908 -7.0350 -2.7729 20 6 -0.2717 -8.3864 -2.2543 21 6 -1.0759 -9.6020 -2.7197 22 6 0.3381 -9.3694 -3.2559 23 6 0.8603 -3.0034 -1.3985 24 1 -0.4850 0.8401 -0.0004 25 1 -0.3716 -1.7542 0.9564 26 1 2.1876 -4.2513 0.9647 27 1 3.1374 -3.5676 -0.4229 28 1 0.1166 -8.3997 -1.2360 29 1 -1.2166 -10.4150 -2.0074 30 1 -1.9078 -9.4243 -3.4013 31 1 0.4361 -9.0385 -4.2898 32 1 1.1278 -10.0290 -2.8964 33 1 1.5091 -2.6305 -2.1910 34 1 -0.1984 -2.8792 -1.6263 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574492405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:09 Heat of formation + Delta-G solvation = 39.723541 kcal Electronic energy + Delta-G solvation = -21278.607206 eV Core-core repulsion = 17920.097168 eV Total energy + Delta-G solvation = -3358.510037 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.21473 -41.29924 -39.15103 -37.95917 -35.95203 -34.11722 -33.13711 -30.81186 -28.62509 -27.11860 -26.97452 -24.72985 -23.28805 -23.13767 -21.76279 -20.17072 -19.46793 -19.10567 -18.10589 -17.50751 -17.23148 -16.99492 -16.60218 -16.21320 -15.95640 -15.47626 -15.05360 -14.61977 -14.43753 -14.17741 -13.77854 -13.41073 -13.35448 -13.05116 -12.78757 -12.72121 -12.44042 -12.26624 -12.22887 -12.20077 -11.63024 -11.46497 -11.33127 -11.00516 -10.97448 -10.67652 -10.52513 -10.27249 -9.70483 -8.27040 -6.43636 -1.44585 -0.32074 0.32988 0.70029 1.49686 1.53832 1.61512 1.66511 1.79486 2.42292 2.61568 2.93788 2.95421 3.22036 3.32317 3.71295 3.86300 3.95531 4.05843 4.08173 4.39702 4.53938 4.59098 4.69458 4.73717 4.82257 4.84324 4.94753 5.13350 5.21017 5.24819 5.74369 5.89611 6.44369 6.59547 6.64109 6.85480 7.30316 7.48167 8.79427 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.028428 B = 0.004308 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.696281 B = 6498.235246 C = 7091.226807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.036 3.964 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.223 3.777 10 O -0.585 6.585 11 C 0.115 3.885 12 N -0.631 5.631 13 C 0.619 3.381 14 O -0.558 6.558 15 C -0.301 4.301 16 S 0.483 5.517 17 N -0.281 5.281 18 N -0.261 5.261 19 C 0.126 3.874 20 C -0.114 4.114 21 C -0.143 4.143 22 C -0.143 4.143 23 C 0.070 3.930 24 H 0.277 0.723 25 H 0.391 0.609 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -8.711 -6.779 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.165 4.165 3 Si 0.793 3.207 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.589 4.589 8 H 0.097 0.903 9 C 0.181 3.819 10 O -0.398 6.398 11 C -0.007 4.007 12 N -0.363 5.363 13 C 0.407 3.593 14 O -0.439 6.439 15 C -0.441 4.441 16 S 0.620 5.380 17 N -0.262 5.262 18 N -0.126 5.126 19 C -0.021 4.021 20 C -0.136 4.136 21 C -0.181 4.181 22 C -0.181 4.181 23 C -0.053 4.053 24 H 0.087 0.913 25 H 0.247 0.753 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.140 -8.875 -7.697 11.803 hybrid contribution 0.638 0.722 0.816 1.263 sum -0.502 -8.153 -6.881 10.680 Atomic orbital electron populations 1.69307 1.07162 1.29058 1.50177 1.25717 0.95683 1.02563 0.92531 0.85388 0.78519 0.78304 0.78444 1.19650 1.21212 1.19413 1.21642 0.94367 0.90153 1.52688 0.90272 1.19807 0.85518 0.91881 0.84657 1.86041 1.45727 1.48340 1.59724 1.23442 0.94383 0.90720 0.92140 1.49620 1.42327 1.04316 1.40068 1.16038 0.80824 0.81476 0.80951 1.90717 1.57653 1.41008 1.54559 1.27573 1.09565 0.98203 1.08750 1.82847 1.21013 1.16231 1.17874 1.78588 1.23257 1.00668 1.23674 1.70570 1.15382 1.12708 1.13957 1.22201 0.91593 0.96478 0.91878 1.20654 1.08749 0.83400 1.00814 1.23146 0.95024 0.96572 1.03316 1.23099 0.97729 0.99555 0.97715 1.24441 1.00958 0.77234 1.02680 0.91279 0.75319 0.91859 0.86799 0.85228 0.85692 0.87968 0.88803 0.85871 0.87535 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.46 11.01 21.45 0.24 -43.23 16 2 C 0.04 1.65 5.39 84.65 0.46 2.10 16 3 Si 0.97 36.93 29.54 68.60 2.03 38.96 16 4 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 5 H -0.29 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 7 C -0.55 -25.29 8.70 25.60 0.22 -25.07 16 8 H 0.08 3.48 7.81 -2.91 -0.02 3.46 16 9 C 0.22 9.89 1.58 -11.12 -0.02 9.87 16 10 O -0.59 -28.81 13.55 -148.98 -2.02 -30.83 16 11 C 0.11 4.56 8.02 83.18 0.67 5.22 16 12 N -0.63 -24.74 3.69 -862.45 -3.18 -27.92 16 13 C 0.62 24.28 8.06 86.59 0.70 24.98 16 14 O -0.56 -23.81 15.74 -4.10 -0.06 -23.87 16 15 C -0.30 -10.33 6.78 24.62 0.17 -10.17 16 16 S 0.48 14.33 20.99 -56.49 -1.19 13.14 16 17 N -0.28 -8.79 12.51 37.02 0.46 -8.32 16 18 N -0.26 -8.29 10.95 -48.18 -0.53 -8.82 16 19 C 0.13 4.02 6.59 42.65 0.28 4.30 16 20 C -0.11 -3.13 5.64 -11.54 -0.07 -3.20 16 21 C -0.14 -2.92 10.11 30.59 0.31 -2.61 16 22 C -0.14 -3.00 10.23 30.60 0.31 -2.69 16 23 C 0.07 2.71 6.90 83.27 0.57 3.29 16 24 H 0.28 12.51 8.31 -92.70 -0.77 11.74 16 25 H 0.39 19.56 6.32 -74.06 -0.47 19.09 16 26 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.11 3.95 8.10 -2.39 -0.02 3.93 16 28 H 0.13 3.95 6.63 -2.39 -0.02 3.94 16 29 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.10 2.18 7.80 -2.39 -0.02 2.16 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.11 3.74 8.10 -2.39 -0.02 3.72 16 34 H 0.07 2.61 6.61 -2.39 -0.02 2.59 16 Total: -1.00 -54.85 309.55 0.05 -54.80 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: 0.69 Total: 30.04 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 3.61 Total: 6.04 kcal Atomic # 7 Polarization: -85.28 SS G_CDS: -3.01 Total: -88.28 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -2.08 Total: -54.70 kcal Atomic # 14 Polarization: 36.93 SS G_CDS: 2.03 Total: 38.96 kcal Atomic # 16 Polarization: 14.33 SS G_CDS: -1.19 Total: 13.14 kcal Total: -54.85 0.05 -54.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574492405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.520 kcal (2) G-P(sol) polarization free energy of solvation -54.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds