Wall clock time and date at job start Tue Mar 31 2020 07:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47022 * 270.00455 * 3 2 1 5 5 H 1.48497 * 109.47070 * 30.00609 * 3 2 1 6 6 H 1.48503 * 109.46811 * 150.00632 * 3 2 1 7 7 C 1.40048 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99784 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00132 * 5.41457 * 9 7 2 11 11 N 1.34781 * 119.99851 * 185.40905 * 9 7 2 12 12 C 1.46501 * 120.00005 * 185.42101 * 11 9 7 13 13 C 1.50699 * 109.46978 * 97.15045 * 12 11 9 14 14 C 1.38232 * 120.01044 * 94.67357 * 13 12 11 15 15 C 1.38219 * 120.01590 * 180.29268 * 14 13 12 16 16 C 1.38262 * 120.02191 * 359.44984 * 15 14 13 17 17 C 1.38202 * 120.01605 * 0.54464 * 16 15 14 18 18 C 1.38337 * 120.00284 * 274.68631 * 13 12 11 19 19 Cl 1.73600 * 120.01078 * 359.96497 * 18 13 12 20 20 C 1.46502 * 119.99754 * 5.41960 * 11 9 7 21 21 C 1.54034 * 113.81740 * 41.69648 * 20 11 9 22 22 O 1.44442 * 85.42538 * 223.23442 * 21 20 11 23 23 C 1.44172 * 93.38202 * 24.08935 * 22 21 20 24 24 H 0.97001 * 119.99228 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46847 * 337.14368 * 12 11 9 26 26 H 1.09005 * 109.46383 * 217.14897 * 12 11 9 27 27 H 1.07998 * 119.99115 * 0.02562 * 14 13 12 28 28 H 1.07990 * 119.98718 * 179.69928 * 15 14 13 29 29 H 1.07998 * 119.99714 * 180.27600 * 16 15 14 30 30 H 1.07996 * 120.00814 * 179.74527 * 17 16 15 31 31 H 1.09002 * 112.99979 * 173.52645 * 20 11 9 32 32 H 1.09001 * 113.86666 * 337.33926 * 21 20 11 33 33 H 1.09002 * 113.86390 * 109.05281 * 21 20 11 34 34 H 1.09004 * 113.87021 * 221.76616 * 23 22 21 35 35 H 1.09005 * 113.98651 * 90.07407 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4383 2.6526 0.7002 6 1 3.5384 1.4400 0.6999 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0621 -2.4827 -0.0995 11 7 1.9443 -3.6452 0.1090 12 6 1.2264 -4.9167 -0.0101 13 6 1.3608 -5.4396 -1.4170 14 6 2.3584 -6.3454 -1.7256 15 6 2.4855 -6.8205 -3.0174 16 6 1.6081 -6.3987 -3.9991 17 6 0.6102 -5.4931 -3.6918 18 6 0.4860 -5.0129 -2.4001 19 17 -0.7673 -3.8758 -2.0132 20 6 3.3899 -3.6396 0.3470 21 6 3.8473 -2.5857 1.3730 22 8 4.9241 -2.3205 0.4476 23 6 4.1873 -2.8213 -0.6860 24 1 -0.4849 0.8401 0.0004 25 1 0.1724 -4.7618 0.2210 26 1 1.6491 -5.6392 0.6881 27 1 3.0412 -6.6787 -0.9581 28 1 3.2680 -7.5244 -3.2590 29 1 1.7050 -6.7735 -5.0073 30 1 -0.0725 -5.1606 -4.4597 31 1 3.7955 -4.6351 0.5279 32 1 3.1523 -1.7543 1.4909 33 1 4.1746 -3.0080 2.3231 34 1 4.7837 -3.4302 -1.3656 35 1 3.5958 -2.0635 -1.1999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581262695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:01 Heat of formation + Delta-G solvation = 9.820387 kcal Electronic energy + Delta-G solvation = -22367.669434 eV Core-core repulsion = 18973.526241 eV Total energy + Delta-G solvation = -3394.143193 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.20289 -38.99714 -36.87132 -35.57432 -33.93826 -32.43326 -31.26513 -30.37922 -27.91172 -26.60596 -25.72088 -24.83610 -22.43678 -21.40039 -20.76317 -18.50339 -17.58047 -16.67765 -15.99732 -15.30943 -15.20035 -15.00624 -14.77799 -14.65566 -13.92970 -13.54096 -13.37321 -13.13522 -12.80085 -12.33749 -12.19882 -11.92443 -11.56173 -11.30775 -11.19166 -11.03469 -10.90675 -10.79835 -10.59286 -10.50555 -10.24336 -9.84150 -9.72164 -8.84686 -8.70503 -8.49943 -8.23712 -7.53774 -7.27793 -6.22894 -4.64624 1.47657 1.50851 2.93596 3.13153 3.21676 3.26290 3.82729 4.10225 4.41960 4.49480 4.62288 5.00142 5.02579 5.12500 5.20869 5.43847 5.51995 5.61544 5.73709 5.85686 5.89525 5.98304 6.09830 6.18387 6.39597 6.48767 6.52121 6.56727 6.60292 6.73724 6.87683 6.99498 7.06513 7.41984 7.53323 8.06176 8.26849 8.98697 9.33867 10.53177 10.71714 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.007202 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.234408 B = 3886.803056 C = 4825.756685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.092 3.908 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.564 4.564 8 H 0.097 0.903 9 C 0.557 3.443 10 O -0.546 6.546 11 N -0.627 5.627 12 C 0.152 3.848 13 C -0.084 4.084 14 C -0.104 4.104 15 C -0.128 4.128 16 C -0.117 4.117 17 C -0.122 4.122 18 C -0.028 4.028 19 Cl -0.012 7.012 20 C 0.102 3.898 21 C -0.001 4.001 22 O -0.391 6.391 23 C 0.009 3.991 24 H 0.267 0.733 25 H 0.097 0.903 26 H 0.061 0.939 27 H 0.122 0.878 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.139 0.861 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -10.599 -3.700 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.389 5.389 2 C -0.129 4.129 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.600 4.600 8 H 0.114 0.886 9 C 0.362 3.638 10 O -0.426 6.426 11 N -0.364 5.364 12 C 0.028 3.972 13 C -0.087 4.087 14 C -0.123 4.123 15 C -0.146 4.146 16 C -0.136 4.136 17 C -0.141 4.141 18 C -0.056 4.056 19 Cl 0.017 6.983 20 C -0.005 4.005 21 C -0.078 4.078 22 O -0.310 6.310 23 C -0.069 4.069 24 H 0.078 0.922 25 H 0.115 0.885 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.143 0.857 31 H 0.109 0.891 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.484 -10.245 -3.651 11.421 hybrid contribution 0.488 0.657 -0.188 0.840 sum 3.973 -9.588 -3.839 11.066 Atomic orbital electron populations 1.70013 1.06953 1.27226 1.34726 1.25698 0.94519 1.00107 0.92581 0.86549 0.80590 0.81872 0.79090 1.19740 1.20523 1.18446 1.21729 0.94882 0.89199 1.54146 0.88582 1.18203 0.87142 0.81890 0.76576 1.90635 1.13741 1.85482 1.52734 1.48299 1.05885 1.04990 1.77231 1.20087 1.00562 0.86879 0.89703 1.20490 0.94376 0.96103 0.97717 1.20965 0.97411 0.97229 0.96662 1.21079 0.99490 1.00770 0.93304 1.20996 0.95429 0.97933 0.99245 1.21078 0.99579 0.98350 0.95085 1.21234 0.94735 0.95304 0.94286 1.98521 1.50128 1.56232 1.93396 1.23947 0.82832 0.98599 0.95112 1.25439 0.88906 1.00451 0.92998 1.89571 1.34669 1.87048 1.19672 1.24932 0.92910 0.97681 0.91350 0.92215 0.88509 0.92072 0.85967 0.86195 0.85989 0.85663 0.89088 0.84361 0.91466 0.91389 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.40 11.84 55.55 0.66 -20.75 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 3 Si 0.89 19.71 29.56 -169.99 -5.02 14.68 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.26 -5.67 7.11 56.52 0.40 -5.26 16 7 C -0.56 -14.49 5.55 -35.63 -0.20 -14.68 16 8 H 0.10 2.33 2.91 -52.49 -0.15 2.18 16 9 C 0.56 14.18 7.01 -12.98 -0.09 14.08 16 10 O -0.55 -15.38 10.85 5.20 0.06 -15.32 16 11 N -0.63 -13.06 2.72 -176.66 -0.48 -13.54 16 12 C 0.15 2.79 5.33 -5.19 -0.03 2.77 16 13 C -0.08 -1.44 5.44 -104.59 -0.57 -2.01 16 14 C -0.10 -1.46 9.68 -39.59 -0.38 -1.84 16 15 C -0.13 -1.60 10.05 -39.58 -0.40 -2.00 16 16 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 17 C -0.12 -1.86 9.83 -39.55 -0.39 -2.25 16 18 C -0.03 -0.50 6.31 -39.50 -0.25 -0.75 16 19 Cl -0.01 -0.26 23.66 -51.86 -1.23 -1.49 16 20 C 0.10 1.86 4.65 -66.85 -0.31 1.55 16 21 C 0.00 -0.02 8.11 37.64 0.31 0.28 16 22 O -0.39 -7.83 12.12 -35.23 -0.43 -8.25 16 23 C 0.01 0.17 8.15 37.64 0.31 0.48 16 24 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 25 H 0.10 2.00 6.22 -51.93 -0.32 1.68 16 26 H 0.06 0.94 8.02 -51.93 -0.42 0.52 16 27 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 29 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.41 8.06 -51.93 -0.42 0.99 16 32 H 0.14 3.05 4.70 -51.93 -0.24 2.80 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.12 2.51 5.39 -51.93 -0.28 2.23 16 LS Contribution 299.84 15.07 4.52 4.52 Total: -1.00 -30.43 299.84 -7.93 -38.36 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.51 Total: 5.76 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.50 Total: -3.97 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.18 Total: -34.29 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.37 Total: -23.58 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.23 Total: -1.49 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.43 -7.93 -38.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581262695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.179 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds