Wall clock time and date at job start Tue Mar 31 2020 07:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86803 * 120.00131 * 2 1 4 4 H 1.48503 * 109.47022 * 270.00455 * 3 2 1 5 5 H 1.48497 * 109.47070 * 30.00609 * 3 2 1 6 6 H 1.48503 * 109.46811 * 150.00632 * 3 2 1 7 7 C 1.40048 * 119.99739 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99784 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00132 * 5.41457 * 9 7 2 11 11 N 1.34781 * 119.99851 * 185.40905 * 9 7 2 12 12 C 1.46501 * 120.00005 * 185.42101 * 11 9 7 13 13 C 1.50699 * 109.46978 * 97.15045 * 12 11 9 14 14 C 1.38232 * 120.01044 * 94.67357 * 13 12 11 15 15 C 1.38219 * 120.01590 * 180.29268 * 14 13 12 16 16 C 1.38262 * 120.02191 * 359.44984 * 15 14 13 17 17 C 1.38202 * 120.01605 * 0.54464 * 16 15 14 18 18 C 1.38337 * 120.00284 * 274.68631 * 13 12 11 19 19 Cl 1.73600 * 120.01078 * 359.96497 * 18 13 12 20 20 C 1.46502 * 119.99754 * 5.41960 * 11 9 7 21 21 C 1.54034 * 113.81740 * 41.69648 * 20 11 9 22 22 O 1.44442 * 85.42538 * 223.23442 * 21 20 11 23 23 C 1.44172 * 93.38202 * 24.08935 * 22 21 20 24 24 H 0.97001 * 119.99228 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46847 * 337.14368 * 12 11 9 26 26 H 1.09005 * 109.46383 * 217.14897 * 12 11 9 27 27 H 1.07998 * 119.99115 * 0.02562 * 14 13 12 28 28 H 1.07990 * 119.98718 * 179.69928 * 15 14 13 29 29 H 1.07998 * 119.99714 * 180.27600 * 16 15 14 30 30 H 1.07996 * 120.00814 * 179.74527 * 17 16 15 31 31 H 1.09002 * 112.99979 * 173.52645 * 20 11 9 32 32 H 1.09001 * 113.86666 * 337.33926 * 21 20 11 33 33 H 1.09002 * 113.86390 * 109.05281 * 21 20 11 34 34 H 1.09004 * 113.87021 * 221.76616 * 23 22 21 35 35 H 1.09005 * 113.98651 * 90.07407 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4383 2.6526 0.7002 6 1 3.5384 1.4400 0.6999 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0621 -2.4827 -0.0995 11 7 1.9443 -3.6452 0.1090 12 6 1.2264 -4.9167 -0.0101 13 6 1.3608 -5.4396 -1.4170 14 6 2.3584 -6.3454 -1.7256 15 6 2.4855 -6.8205 -3.0174 16 6 1.6081 -6.3987 -3.9991 17 6 0.6102 -5.4931 -3.6918 18 6 0.4860 -5.0129 -2.4001 19 17 -0.7673 -3.8758 -2.0132 20 6 3.3899 -3.6396 0.3470 21 6 3.8473 -2.5857 1.3730 22 8 4.9241 -2.3205 0.4476 23 6 4.1873 -2.8213 -0.6860 24 1 -0.4849 0.8401 0.0004 25 1 0.1724 -4.7618 0.2210 26 1 1.6491 -5.6392 0.6881 27 1 3.0412 -6.6787 -0.9581 28 1 3.2680 -7.5244 -3.2590 29 1 1.7050 -6.7735 -5.0073 30 1 -0.0725 -5.1606 -4.4597 31 1 3.7955 -4.6351 0.5279 32 1 3.1523 -1.7543 1.4909 33 1 4.1746 -3.0080 2.3231 34 1 4.7837 -3.4302 -1.3656 35 1 3.5958 -2.0635 -1.1999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581262695.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:00 Heat of formation + Delta-G solvation = -9.544729 kcal Electronic energy + Delta-G solvation = -22368.509168 eV Core-core repulsion = 18973.526241 eV Total energy + Delta-G solvation = -3394.982927 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.74857 -40.19133 -38.61874 -36.98781 -35.60045 -34.39552 -32.61179 -31.50457 -29.42458 -28.40995 -27.22834 -26.33036 -23.60694 -22.87710 -22.14031 -20.19103 -19.35949 -17.84938 -17.51941 -16.76420 -16.69915 -16.43277 -16.35592 -16.06940 -15.63945 -14.88143 -14.74824 -14.59860 -14.16005 -13.92347 -13.84868 -13.41677 -13.14281 -12.86734 -12.77408 -12.57910 -12.29194 -12.17412 -12.11359 -11.97589 -11.93018 -11.48270 -11.25773 -10.79146 -10.10770 -9.87078 -9.52850 -9.41542 -8.94974 -8.18466 -6.64015 0.32197 0.39628 1.36680 1.39347 1.51714 1.59967 2.24519 2.55830 2.65545 2.93713 3.14306 3.53669 3.76221 3.88947 4.07096 4.17288 4.22240 4.32902 4.42345 4.53483 4.65586 4.71093 4.80342 4.90643 4.95562 5.06713 5.11294 5.32008 5.40965 5.42014 5.48312 5.52805 5.55818 5.86746 6.01305 6.23810 6.48357 7.00419 7.51491 8.60588 8.81239 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016760 B = 0.007202 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.234408 B = 3886.803056 C = 4825.756685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.041 3.959 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.574 4.574 8 H 0.108 0.892 9 C 0.548 3.452 10 O -0.581 6.581 11 N -0.626 5.626 12 C 0.153 3.847 13 C -0.104 4.104 14 C -0.099 4.099 15 C -0.116 4.116 16 C -0.109 4.109 17 C -0.135 4.135 18 C -0.058 4.058 19 Cl -0.059 7.059 20 C 0.107 3.893 21 C -0.005 4.005 22 O -0.399 6.399 23 C 0.009 3.991 24 H 0.267 0.733 25 H 0.062 0.938 26 H 0.096 0.904 27 H 0.152 0.848 28 H 0.162 0.838 29 H 0.158 0.842 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.550 -12.974 -4.360 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.174 4.174 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.610 4.610 8 H 0.126 0.874 9 C 0.352 3.648 10 O -0.463 6.463 11 N -0.362 5.362 12 C 0.029 3.971 13 C -0.107 4.107 14 C -0.117 4.117 15 C -0.134 4.134 16 C -0.127 4.127 17 C -0.153 4.153 18 C -0.085 4.085 19 Cl -0.030 7.030 20 C 0.001 3.999 21 C -0.082 4.082 22 O -0.317 6.317 23 C -0.068 4.068 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.114 0.886 27 H 0.170 0.830 28 H 0.179 0.821 29 H 0.175 0.825 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.837 -12.654 -4.310 15.014 hybrid contribution -0.456 1.211 -0.041 1.295 sum 6.381 -11.442 -4.351 13.805 Atomic orbital electron populations 1.70170 1.08769 1.28000 1.37199 1.26614 0.95157 1.03682 0.91979 0.85517 0.79321 0.77673 0.79064 1.19457 1.20040 1.17741 1.22144 0.95577 0.89819 1.53492 0.87439 1.18349 0.86877 0.83346 0.76203 1.90620 1.15303 1.86536 1.53835 1.48053 1.07062 1.04776 1.76309 1.20142 0.98659 0.86356 0.91902 1.20438 0.95870 0.97888 0.96455 1.21294 0.96382 0.95749 0.98323 1.21577 0.99549 1.00083 0.92217 1.21441 0.93874 0.96185 1.01200 1.21282 1.00807 0.99160 0.94084 1.21486 0.94865 0.96048 0.96113 1.98501 1.52342 1.58385 1.93802 1.24155 0.81034 1.00419 0.94253 1.25294 0.88464 0.99765 0.94630 1.89566 1.34749 1.87347 1.20077 1.24818 0.93223 0.97191 0.91606 0.92282 0.91979 0.88559 0.82988 0.82077 0.82484 0.85250 0.84824 0.87828 0.88276 0.88200 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.95 11.84 21.84 0.26 -47.69 16 2 C 0.04 2.25 5.50 85.30 0.47 2.71 16 3 Si 0.96 41.64 29.56 68.60 2.03 43.67 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.25 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.57 -30.35 5.55 24.83 0.14 -30.21 16 8 H 0.11 5.29 2.91 -2.91 -0.01 5.28 16 9 C 0.55 28.81 7.01 86.36 0.61 29.41 16 10 O -0.58 -34.50 10.85 -4.29 -0.05 -34.55 16 11 N -0.63 -25.79 2.72 -842.10 -2.29 -28.08 16 12 C 0.15 5.51 5.33 85.63 0.46 5.97 16 13 C -0.10 -3.39 5.44 -19.84 -0.11 -3.50 16 14 C -0.10 -2.33 9.68 22.26 0.22 -2.12 16 15 C -0.12 -2.28 10.05 22.27 0.22 -2.06 16 16 C -0.11 -2.36 10.05 22.27 0.22 -2.14 16 17 C -0.13 -3.94 9.83 22.29 0.22 -3.72 16 18 C -0.06 -2.10 6.31 22.32 0.14 -1.96 16 19 Cl -0.06 -2.67 23.66 -2.72 -0.06 -2.73 16 20 C 0.11 3.63 4.65 45.69 0.21 3.84 16 21 C 0.00 -0.17 8.11 72.30 0.59 0.42 16 22 O -0.40 -15.00 12.12 -148.98 -1.81 -16.81 16 23 C 0.01 0.33 8.15 72.30 0.59 0.92 16 24 H 0.27 14.70 8.29 -92.71 -0.77 13.93 16 25 H 0.06 2.68 6.22 -2.39 -0.01 2.66 16 26 H 0.10 2.70 8.02 -2.38 -0.02 2.68 16 27 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.16 1.92 8.06 -2.92 -0.02 1.90 16 29 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 31 H 0.13 3.43 8.06 -2.39 -0.02 3.41 16 32 H 0.10 4.58 4.70 -2.39 -0.01 4.56 16 33 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 34 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 35 H 0.08 3.51 5.39 -2.38 -0.01 3.49 16 Total: -1.00 -71.07 299.84 3.18 -67.89 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 1.13 Total: 20.73 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: 3.97 Total: -2.42 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -2.04 Total: -75.77 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -1.85 Total: -51.36 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 17 Polarization: -2.67 SS G_CDS: -0.06 Total: -2.73 kcal Total: -71.07 3.18 -67.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581262695.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.344 kcal (2) G-P(sol) polarization free energy of solvation -71.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds