Wall clock time and date at job start Tue Mar 31 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48499 * 109.47015 * 269.99957 * 3 2 1 5 5 H 1.48497 * 109.47343 * 29.99812 * 3 2 1 6 6 H 1.48503 * 109.47420 * 150.00026 * 3 2 1 7 7 C 1.37881 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99407 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00362 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99907 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99829 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99864 * 179.97438 * 13 11 10 15 15 H 1.09008 * 110.86064 * 37.27939 * 14 13 11 16 16 C 1.54708 * 110.94042 * 273.55139 * 14 13 11 17 17 O 1.43778 * 102.78409 * 267.15547 * 16 14 13 18 18 C 1.36153 * 109.25359 * 332.33231 * 17 16 14 19 19 C 1.38877 * 111.24177 * 18.85805 * 18 17 16 20 20 C 1.37735 * 120.79181 * 179.03104 * 19 18 17 21 21 C 1.38376 * 120.00211 * 0.79979 * 20 19 18 22 22 C 1.38245 * 119.77329 * 359.46009 * 21 20 19 23 23 C 1.38067 * 120.33978 * 0.10845 * 22 21 20 24 24 Cl 1.73599 * 119.88997 * 180.09016 * 23 22 21 25 25 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47356 * 59.99371 * 9 7 2 27 27 H 1.09003 * 109.47078 * 299.99707 * 9 7 2 28 28 H 1.08994 * 109.47202 * 59.99677 * 10 9 7 29 29 H 1.08999 * 109.46807 * 299.99291 * 10 9 7 30 30 H 0.96993 * 119.99953 * 0.02562 * 13 11 10 31 31 H 1.08995 * 110.75118 * 148.83604 * 16 14 13 32 32 H 1.08990 * 110.90797 * 25.55241 * 16 14 13 33 33 H 1.08001 * 119.99586 * 180.56357 * 20 19 18 34 34 H 1.08002 * 120.11561 * 179.74730 * 21 20 19 35 35 H 1.07997 * 119.83235 * 180.12470 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5285 -2.6366 -0.0001 12 8 6.1349 -1.5863 0.0012 13 7 6.2024 -3.8039 -0.0006 14 6 7.6674 -3.8039 0.0001 15 1 8.0553 -2.9937 0.6177 16 6 8.2209 -3.7135 -1.4418 17 8 8.3997 -5.0942 -1.8010 18 6 8.6267 -5.8253 -0.6751 19 6 8.2091 -5.1433 0.4604 20 6 8.3288 -5.7127 1.7088 21 6 8.8857 -6.9722 1.8443 22 6 9.3101 -7.6595 0.7224 23 6 9.1830 -7.0947 -0.5310 24 17 9.7177 -7.9691 -1.9321 25 1 -0.4850 0.8401 0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8752 -0.6797 -0.8895 28 1 3.6585 -3.1494 -0.8920 29 1 3.6579 -3.1513 0.8880 30 1 5.7174 -4.6438 -0.0020 31 1 9.1735 -3.1840 -1.4573 32 1 7.5023 -3.2319 -2.1048 33 1 7.9915 -5.1745 2.5823 34 1 8.9842 -7.4187 2.8228 35 1 9.7429 -8.6434 0.8269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589708357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:49 Heat of formation + Delta-G solvation = -53.128560 kcal Electronic energy + Delta-G solvation = -20540.714089 eV Core-core repulsion = 17143.841225 eV Total energy + Delta-G solvation = -3396.872864 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.70261 -39.20779 -37.96679 -36.68784 -34.78089 -33.53470 -31.75672 -31.06735 -30.35477 -29.08642 -26.14387 -23.88342 -22.80012 -22.16947 -21.07977 -19.83849 -17.99039 -17.48739 -16.99899 -16.89384 -16.22638 -15.84449 -15.37812 -15.01636 -14.81000 -14.15543 -14.11681 -13.71540 -13.36826 -13.13648 -12.88709 -12.60073 -12.34204 -12.09620 -11.91543 -11.66382 -11.46888 -11.41565 -11.14665 -10.99880 -10.22377 -10.10275 -9.84500 -9.57616 -9.23926 -9.19791 -9.07224 -8.57768 -8.53624 -6.05651 -4.04800 0.63247 0.80442 1.81955 2.79321 2.93973 2.97583 3.35441 3.42176 3.46526 3.52057 3.93964 4.21543 4.43142 4.48025 4.68155 4.81157 4.85705 4.94544 5.19609 5.21982 5.29648 5.40295 5.53554 5.64309 5.79592 5.94173 6.01186 6.03074 6.07859 6.37180 6.61687 6.63992 7.30817 7.38211 7.59376 7.75233 8.42302 8.52104 8.97189 9.57027 11.07163 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.002954 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.024633 B = 9475.815498 C = 9605.825409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.122 4.122 11 C 0.513 3.487 12 O -0.537 6.537 13 N -0.730 5.730 14 C 0.162 3.838 15 H 0.116 0.884 16 C 0.039 3.961 17 O -0.289 6.289 18 C 0.132 3.868 19 C -0.180 4.180 20 C -0.046 4.046 21 C -0.142 4.142 22 C -0.069 4.069 23 C -0.063 4.063 24 Cl -0.062 7.062 25 H 0.264 0.736 26 H 0.024 0.976 27 H 0.019 0.981 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.403 0.597 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.135 0.865 34 H 0.140 0.860 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.498 -16.770 1.852 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.302 3.698 12 O -0.412 6.412 13 N -0.384 5.384 14 C 0.057 3.943 15 H 0.134 0.866 16 C -0.038 4.038 17 O -0.202 6.202 18 C 0.084 3.916 19 C -0.182 4.182 20 C -0.064 4.064 21 C -0.160 4.160 22 C -0.087 4.087 23 C -0.090 4.090 24 Cl -0.033 7.033 25 H 0.073 0.927 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.238 0.762 31 H 0.109 0.891 32 H 0.135 0.865 33 H 0.153 0.847 34 H 0.158 0.842 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 21.792 -15.979 1.480 27.063 hybrid contribution 0.135 0.469 -0.084 0.495 sum 21.927 -15.510 1.396 26.894 Atomic orbital electron populations 1.69911 1.06311 1.27009 1.50925 1.24977 0.94713 0.99246 0.94305 0.86790 0.80582 0.83385 0.78749 1.20227 1.21431 1.18553 1.21102 0.89235 0.94594 1.51488 0.90920 1.19372 0.96485 0.90034 0.97678 1.21694 0.87414 1.03463 1.03585 1.21684 0.91732 0.82513 0.73828 1.90664 1.70719 1.31310 1.48548 1.46262 1.04730 1.09859 1.77525 1.20842 0.82644 0.95039 0.95820 0.86643 1.24435 1.02531 0.80180 0.96606 1.86952 1.85699 1.19677 1.27865 1.19261 0.93946 0.91743 0.86599 1.20770 1.05595 0.97962 0.93847 1.20526 0.95380 0.94584 0.95927 1.21037 1.01494 0.94764 0.98698 1.20884 0.98156 1.00164 0.89530 1.20121 1.06856 0.92412 0.89593 1.98378 1.88780 1.75490 1.40698 0.92677 0.95799 0.96252 0.89399 0.89403 0.76212 0.89119 0.86473 0.84739 0.84245 0.84001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 2 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 3 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.56 6.54 56.52 0.37 -6.19 16 7 C -0.53 -14.86 9.66 -34.44 -0.33 -15.19 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 10 C -0.12 -2.26 5.64 -27.88 -0.16 -2.42 16 11 C 0.51 8.68 7.83 -10.98 -0.09 8.59 16 12 O -0.54 -10.95 15.72 5.56 0.09 -10.86 16 13 N -0.73 -9.25 5.18 -53.60 -0.28 -9.52 16 14 C 0.16 1.85 3.40 -67.72 -0.23 1.62 16 15 H 0.12 1.37 7.72 -51.92 -0.40 0.97 16 16 C 0.04 0.43 7.72 38.06 0.29 0.72 16 17 O -0.29 -3.52 11.09 -20.23 -0.22 -3.74 16 18 C 0.13 1.46 6.83 -38.93 -0.27 1.20 16 19 C -0.18 -1.81 5.80 -104.11 -0.60 -2.42 16 20 C -0.05 -0.37 10.03 -39.71 -0.40 -0.77 16 21 C -0.14 -0.96 10.07 -39.53 -0.40 -1.36 16 22 C -0.07 -0.52 9.79 -39.64 -0.39 -0.91 16 23 C -0.06 -0.62 6.34 -39.23 -0.25 -0.87 16 24 Cl -0.06 -0.62 28.94 -51.86 -1.50 -2.12 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 26 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 27 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 28 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 30 H 0.40 4.37 8.60 -40.82 -0.35 4.02 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.12 1.37 8.10 -51.93 -0.42 0.95 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -33.36 319.03 -8.07 -41.42 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.06 Total: -0.65 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.00 Total: -9.92 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.50 Total: -36.55 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.14 Total: -14.61 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.36 -8.07 -41.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.706 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds