Wall clock time and date at job start Tue Mar 31 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48499 * 109.47015 * 269.99957 * 3 2 1 5 5 H 1.48497 * 109.47343 * 29.99812 * 3 2 1 6 6 H 1.48503 * 109.47420 * 150.00026 * 3 2 1 7 7 C 1.37881 * 120.00209 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99407 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00362 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99907 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99829 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99864 * 179.97438 * 13 11 10 15 15 H 1.09008 * 110.86064 * 37.27939 * 14 13 11 16 16 C 1.54708 * 110.94042 * 273.55139 * 14 13 11 17 17 O 1.43778 * 102.78409 * 267.15547 * 16 14 13 18 18 C 1.36153 * 109.25359 * 332.33231 * 17 16 14 19 19 C 1.38877 * 111.24177 * 18.85805 * 18 17 16 20 20 C 1.37735 * 120.79181 * 179.03104 * 19 18 17 21 21 C 1.38376 * 120.00211 * 0.79979 * 20 19 18 22 22 C 1.38245 * 119.77329 * 359.46009 * 21 20 19 23 23 C 1.38067 * 120.33978 * 0.10845 * 22 21 20 24 24 Cl 1.73599 * 119.88997 * 180.09016 * 23 22 21 25 25 H 0.97005 * 119.99719 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.47356 * 59.99371 * 9 7 2 27 27 H 1.09003 * 109.47078 * 299.99707 * 9 7 2 28 28 H 1.08994 * 109.47202 * 59.99677 * 10 9 7 29 29 H 1.08999 * 109.46807 * 299.99291 * 10 9 7 30 30 H 0.96993 * 119.99953 * 0.02562 * 13 11 10 31 31 H 1.08995 * 110.75118 * 148.83604 * 16 14 13 32 32 H 1.08990 * 110.90797 * 25.55241 * 16 14 13 33 33 H 1.08001 * 119.99586 * 180.56357 * 20 19 18 34 34 H 1.08002 * 120.11561 * 179.74730 * 21 20 19 35 35 H 1.07997 * 119.83235 * 180.12470 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 6 5.5285 -2.6366 -0.0001 12 8 6.1349 -1.5863 0.0012 13 7 6.2024 -3.8039 -0.0006 14 6 7.6674 -3.8039 0.0001 15 1 8.0553 -2.9937 0.6177 16 6 8.2209 -3.7135 -1.4418 17 8 8.3997 -5.0942 -1.8010 18 6 8.6267 -5.8253 -0.6751 19 6 8.2091 -5.1433 0.4604 20 6 8.3288 -5.7127 1.7088 21 6 8.8857 -6.9722 1.8443 22 6 9.3101 -7.6595 0.7224 23 6 9.1830 -7.0947 -0.5310 24 17 9.7177 -7.9691 -1.9321 25 1 -0.4850 0.8401 0.0004 26 1 3.8746 -0.6808 0.8905 27 1 3.8752 -0.6797 -0.8895 28 1 3.6585 -3.1494 -0.8920 29 1 3.6579 -3.1513 0.8880 30 1 5.7174 -4.6438 -0.0020 31 1 9.1735 -3.1840 -1.4573 32 1 7.5023 -3.2319 -2.1048 33 1 7.9915 -5.1745 2.5823 34 1 8.9842 -7.4187 2.8228 35 1 9.7429 -8.6434 0.8269 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589708357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:49 Heat of formation + Delta-G solvation = -75.330753 kcal Electronic energy + Delta-G solvation = -20541.676848 eV Core-core repulsion = 17143.841225 eV Total energy + Delta-G solvation = -3397.835623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.52183 -40.50234 -38.69111 -37.40943 -35.93335 -35.49664 -33.42397 -32.23145 -31.04138 -30.01004 -27.92208 -24.79828 -23.63011 -23.28045 -22.37312 -21.26682 -19.27746 -18.76267 -18.08946 -17.79202 -17.43459 -16.76118 -16.48162 -16.35137 -16.17649 -15.52044 -14.96308 -14.82252 -14.64399 -14.50937 -14.23553 -13.91472 -13.40388 -13.20777 -13.00758 -12.87901 -12.68236 -12.36009 -12.17163 -12.10068 -11.96746 -11.87454 -11.76247 -11.40210 -10.93159 -10.78017 -10.29013 -9.91399 -9.30963 -8.31167 -6.34413 -0.03550 0.12820 1.11051 1.34411 1.36322 1.50750 1.58714 2.04604 2.06363 2.35399 2.61164 3.04743 3.14038 3.39122 3.69497 3.95677 4.06635 4.14191 4.19837 4.28130 4.37971 4.45953 4.48381 4.56384 4.66109 4.98685 5.03362 5.18536 5.25414 5.32415 5.38336 5.44973 5.47317 5.61331 5.88808 6.23265 6.45622 6.72422 7.18907 7.31052 8.84616 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.032028 B = 0.002954 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.024633 B = 9475.815498 C = 9605.825409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.530 4.530 8 H 0.048 0.952 9 C 0.006 3.994 10 C -0.117 4.117 11 C 0.522 3.478 12 O -0.575 6.575 13 N -0.710 5.710 14 C 0.162 3.838 15 H 0.112 0.888 16 C 0.039 3.961 17 O -0.307 6.307 18 C 0.109 3.891 19 C -0.186 4.186 20 C -0.047 4.047 21 C -0.128 4.128 22 C -0.064 4.064 23 C -0.077 4.077 24 Cl -0.070 7.070 25 H 0.267 0.733 26 H 0.013 0.987 27 H 0.010 0.990 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.414 0.586 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.150 0.850 34 H 0.174 0.826 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.307 -17.894 3.038 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.568 4.568 8 H 0.067 0.933 9 C -0.032 4.032 10 C -0.157 4.157 11 C 0.311 3.689 12 O -0.454 6.454 13 N -0.363 5.363 14 C 0.057 3.943 15 H 0.130 0.870 16 C -0.037 4.037 17 O -0.220 6.220 18 C 0.062 3.938 19 C -0.188 4.188 20 C -0.065 4.065 21 C -0.146 4.146 22 C -0.082 4.082 23 C -0.104 4.104 24 Cl -0.042 7.042 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.029 0.971 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.168 0.832 34 H 0.191 0.809 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 23.617 -17.160 2.666 29.314 hybrid contribution -0.416 0.659 -0.409 0.881 sum 23.201 -16.500 2.257 28.559 Atomic orbital electron populations 1.70031 1.07890 1.28116 1.52532 1.25835 0.95498 1.02981 0.94259 0.85800 0.79316 0.79305 0.79123 1.19445 1.20520 1.18188 1.21443 0.91386 0.93647 1.50331 0.93344 1.19221 0.93798 0.93622 0.96577 1.21508 0.89046 1.00062 1.05087 1.21180 0.90918 0.83029 0.73746 1.90653 1.71129 1.32827 1.50763 1.45995 1.05659 1.08991 1.75632 1.20894 0.81219 0.96012 0.96213 0.87031 1.24418 1.03057 0.80204 0.96014 1.86916 1.86255 1.20013 1.28859 1.19469 0.95392 0.92431 0.86486 1.20680 1.06477 0.97133 0.94463 1.20828 0.94915 0.95194 0.95564 1.21439 0.99445 0.93841 0.99882 1.21259 0.97186 1.01069 0.88688 1.20410 1.07435 0.92267 0.90268 1.98372 1.88879 1.75502 1.41415 0.92396 0.96846 0.97143 0.88137 0.87832 0.74913 0.87597 0.87525 0.83209 0.80897 0.81579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.94 46.12 27.47 68.60 1.88 48.01 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.26 -12.41 6.54 99.48 0.65 -11.76 16 7 C -0.53 -30.23 9.66 25.60 0.25 -29.98 16 8 H 0.05 2.92 7.99 -2.91 -0.02 2.90 16 9 C 0.01 0.28 3.33 29.85 0.10 0.38 16 10 C -0.12 -4.25 5.64 29.85 0.17 -4.08 16 11 C 0.52 17.15 7.83 87.66 0.69 17.83 16 12 O -0.57 -23.14 15.72 -3.03 -0.05 -23.19 16 13 N -0.71 -17.00 5.18 -441.87 -2.29 -19.29 16 14 C 0.16 3.49 3.40 45.13 0.15 3.65 16 15 H 0.11 2.53 7.72 -2.38 -0.02 2.52 16 16 C 0.04 0.84 7.72 72.56 0.56 1.40 16 17 O -0.31 -7.33 11.09 -95.30 -1.06 -8.39 16 18 C 0.11 2.28 6.83 22.69 0.15 2.43 16 19 C -0.19 -3.40 5.80 -19.53 -0.11 -3.51 16 20 C -0.05 -0.62 10.03 22.18 0.22 -0.39 16 21 C -0.13 -1.24 10.07 22.30 0.22 -1.01 16 22 C -0.06 -0.76 9.79 22.23 0.22 -0.54 16 23 C -0.08 -1.39 6.34 22.50 0.14 -1.24 16 24 Cl -0.07 -1.33 28.94 -2.72 -0.08 -1.41 16 25 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 26 H 0.01 0.66 7.16 -2.38 -0.02 0.65 16 27 H 0.01 0.51 7.53 -2.39 -0.02 0.49 16 28 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 29 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 30 H 0.41 8.22 8.60 -92.71 -0.80 7.42 16 31 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.11 2.50 8.10 -2.39 -0.02 2.48 16 33 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.17 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.17 1.14 8.06 -2.91 -0.02 1.11 16 Total: -1.00 -72.46 319.03 2.21 -70.25 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: 0.27 Total: 6.65 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: 3.23 Total: -13.91 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.99 Total: -78.00 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -1.10 Total: -31.58 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.88 Total: 48.01 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -72.46 2.21 -70.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589708357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.084 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds