Wall clock time and date at job start Tue Mar 31 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42910 * 113.99889 * 2 1 4 4 C 1.52999 * 109.47066 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47079 * 64.90153 * 4 3 2 6 6 C 1.36861 * 119.99759 * 264.52995 * 5 4 3 7 7 H 1.08003 * 119.99794 * 126.70186 * 6 5 4 8 8 C 1.38990 * 120.00346 * 306.70372 * 6 5 4 9 9 N 1.31406 * 120.00544 * 183.09085 * 8 6 5 10 10 Si 1.86802 * 120.00100 * 3.08948 * 8 6 5 11 11 H 1.48498 * 109.47475 * 94.38693 * 10 8 6 12 12 H 1.48502 * 109.47256 * 214.39399 * 10 8 6 13 13 H 1.48501 * 109.46933 * 334.39197 * 10 8 6 14 14 C 1.34774 * 120.00270 * 84.53244 * 5 4 3 15 15 O 1.21785 * 119.99886 * 4.66068 * 14 5 4 16 16 C 1.46282 * 120.00358 * 184.65868 * 14 5 4 17 17 C 1.36024 * 125.00000 * 173.52866 * 16 14 5 18 18 C 1.38665 * 115.18985 * 179.97438 * 17 16 14 19 19 O 1.36652 * 139.74007 * 179.64249 * 18 17 16 20 20 C 1.34074 * 109.73141 * 179.97438 * 19 18 17 21 21 C 1.34259 * 109.49223 * 0.37840 * 20 19 18 22 22 C 1.38103 * 113.39418 * 359.97120 * 18 17 16 23 23 S 1.75647 * 124.99765 * 353.48028 * 16 14 5 24 24 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46893 * 299.99561 * 1 2 3 26 26 H 1.08995 * 109.47234 * 59.99849 * 1 2 3 27 27 H 1.09000 * 109.47051 * 60.00185 * 3 2 1 28 28 H 1.08994 * 109.46800 * 300.00012 * 3 2 1 29 29 H 1.08999 * 109.47460 * 304.90159 * 4 3 2 30 30 H 1.08999 * 109.46735 * 184.89887 * 4 3 2 31 31 H 0.96993 * 120.00559 * 179.97438 * 9 8 6 32 32 H 1.07997 * 122.40469 * 359.96767 * 17 16 14 33 33 H 1.07997 * 125.25267 * 180.11796 * 20 19 18 34 34 H 1.08006 * 126.50845 * 179.77260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9755 0.5624 -1.2518 6 6 4.2043 -0.7860 -1.3017 7 1 3.7194 -1.3885 -2.0556 8 6 5.0607 -1.3802 -0.3823 9 7 5.3280 -2.6640 -0.4675 10 14 5.8319 -0.3538 0.9747 11 1 5.0005 -0.4499 2.2013 12 1 7.1984 -0.8592 1.2619 13 1 5.9098 1.0639 0.5394 14 6 4.1550 1.3176 -2.3535 15 8 4.0340 2.5277 -2.2885 16 6 4.4951 0.6839 -3.6273 17 6 4.5760 1.3286 -4.8223 18 6 4.9156 0.5284 -5.9027 19 8 5.1220 0.6279 -7.2499 20 6 5.4440 -0.5744 -7.7484 21 6 5.4495 -1.4825 -6.7596 22 6 5.1131 -0.7957 -5.5638 23 16 4.8603 -1.0211 -3.8385 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8516 0.5698 0.8419 30 1 3.9784 2.1768 0.0871 31 1 5.9259 -3.0785 0.1739 32 1 4.3891 2.3875 -4.9225 33 1 5.6610 -0.7812 -8.7860 34 1 5.6687 -2.5358 -6.8557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590892187.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:34 Heat of formation + Delta-G solvation = -20.418041 kcal Electronic energy + Delta-G solvation = -21640.820175 eV Core-core repulsion = 18247.409452 eV Total energy + Delta-G solvation = -3393.410723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79243 -39.15282 -37.22128 -35.44399 -34.68641 -32.33737 -31.90649 -29.95958 -27.73769 -25.97779 -25.17448 -23.69624 -22.43872 -21.55778 -19.85844 -19.03896 -17.93139 -17.02542 -16.52768 -16.00921 -15.64236 -15.58725 -14.91220 -14.77588 -14.55781 -14.20454 -13.95174 -13.74951 -13.03065 -12.73223 -12.51708 -12.24244 -12.08360 -11.78763 -11.65930 -11.36248 -11.27159 -11.04404 -10.96963 -10.46999 -9.99642 -9.86003 -9.60456 -9.24278 -9.16232 -8.91053 -7.91671 -7.63583 -7.21632 -6.64567 -4.50276 1.11066 2.31893 2.67018 2.89849 3.03160 3.05797 3.12557 3.14017 3.25564 3.94382 4.06682 4.17919 4.35597 4.75986 5.16793 5.33914 5.49408 5.54336 5.66606 5.74222 5.75488 5.81974 5.89407 5.95287 6.05949 6.16166 6.30142 6.37748 6.44991 6.71321 6.79775 7.23219 7.46939 7.64328 7.84154 7.92762 8.68730 9.04166 9.40886 10.37322 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.006174 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.682318 B = 4533.988562 C = 5130.302366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.108 3.892 5 N -0.456 5.456 6 C -0.335 4.335 7 H 0.117 0.883 8 C 0.085 3.915 9 N -0.839 5.839 10 Si 0.885 3.115 11 H -0.268 1.268 12 H -0.284 1.284 13 H -0.256 1.256 14 C 0.559 3.441 15 O -0.584 6.584 16 C -0.201 4.201 17 C -0.073 4.073 18 C -0.006 4.006 19 O -0.183 6.183 20 C -0.019 4.019 21 C -0.173 4.173 22 C -0.311 4.311 23 S 0.334 5.666 24 H 0.081 0.919 25 H 0.032 0.968 26 H 0.034 0.966 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.282 0.718 32 H 0.142 0.858 33 H 0.202 0.798 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 1.486 -3.816 4.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.026 4.026 4 C -0.015 4.015 5 N -0.177 5.177 6 C -0.471 4.471 7 H 0.133 0.867 8 C -0.128 4.128 9 N -0.471 5.471 10 Si 0.712 3.288 11 H -0.194 1.194 12 H -0.211 1.211 13 H -0.180 1.180 14 C 0.349 3.651 15 O -0.470 6.470 16 C -0.322 4.322 17 C -0.109 4.109 18 C -0.061 4.061 19 O -0.083 6.083 20 C -0.088 4.088 21 C -0.195 4.195 22 C -0.426 4.426 23 S 0.609 5.391 24 H 0.100 0.900 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.160 0.840 33 H 0.218 0.782 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.446 0.699 -2.926 3.877 hybrid contribution 0.075 1.484 -0.309 1.518 sum -2.371 2.183 -3.235 4.566 Atomic orbital electron populations 1.22674 0.82684 1.02192 0.99005 1.88140 1.18029 1.26963 1.95114 1.22929 0.94831 0.85127 0.99733 1.21774 0.92050 0.98984 0.88673 1.43379 1.58801 1.07836 1.07651 1.18848 1.27955 0.81506 1.18745 0.86661 1.25529 0.94005 0.95604 0.97688 1.69624 1.32277 1.10080 1.35132 0.86750 0.78719 0.81615 0.81717 1.19383 1.21061 1.17992 1.17082 0.79291 0.85631 0.83056 1.90700 1.56885 1.13507 1.85893 1.23952 1.12286 0.99397 0.96607 1.18717 1.04793 1.00108 0.87239 1.19324 1.09953 0.94297 0.82515 1.84220 1.71731 1.32353 1.20015 1.23853 1.03688 0.82081 0.99224 1.20911 1.08179 1.00223 0.90183 1.26458 1.10904 0.98029 1.07223 1.86364 1.62277 1.01664 0.88797 0.90014 0.94982 0.94719 0.93496 0.93029 0.90865 0.89422 0.90745 0.83981 0.78167 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.16 10.43 -35.23 -0.37 -7.52 16 3 C 0.05 0.95 6.24 37.16 0.23 1.19 16 4 C 0.11 2.26 3.84 -4.04 -0.02 2.24 16 5 N -0.46 -10.68 2.04 -116.44 -0.24 -10.91 16 6 C -0.34 -8.20 6.98 -15.03 -0.10 -8.30 16 7 H 0.12 2.97 5.72 -33.16 -0.19 2.78 16 8 C 0.08 2.08 5.49 -17.45 -0.10 1.98 16 9 N -0.84 -21.17 13.96 55.50 0.77 -20.40 16 10 Si 0.89 19.30 24.79 -169.99 -4.21 15.09 16 11 H -0.27 -5.63 7.08 56.52 0.40 -5.23 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 13 H -0.26 -5.59 6.32 56.52 0.36 -5.23 16 14 C 0.56 13.33 7.55 -13.03 -0.10 13.23 16 15 O -0.58 -14.54 16.44 5.11 0.08 -14.45 16 16 C -0.20 -4.51 6.25 -37.15 -0.23 -4.74 16 17 C -0.07 -1.52 9.89 -40.22 -0.40 -1.92 16 18 C -0.01 -0.11 7.79 -39.47 -0.31 -0.42 16 19 O -0.18 -3.27 10.72 -0.77 -0.01 -3.28 16 20 C -0.02 -0.27 12.00 29.33 0.35 0.08 16 21 C -0.17 -2.80 10.91 -39.56 -0.43 -3.23 16 22 C -0.31 -6.14 7.35 -38.21 -0.28 -6.43 16 23 S 0.33 7.13 18.51 -107.50 -1.99 5.14 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.54 3.94 -51.93 -0.20 1.33 16 30 H 0.09 1.76 7.45 -51.93 -0.39 1.37 16 31 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.14 2.80 8.01 -52.49 -0.42 2.38 16 33 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.15 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -29.08 302.96 -5.00 -34.08 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.34 Total: 2.44 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -0.27 Total: -4.75 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.54 Total: -31.31 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: -0.29 Total: -25.26 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.21 Total: 15.09 kcal Atomic # 16 Polarization: 7.13 SS G_CDS: -1.99 Total: 5.14 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.08 -5.00 -34.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892187.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.663 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds