Wall clock time and date at job start Tue Mar 31 2020 06:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42910 * 113.99889 * 2 1 4 4 C 1.52999 * 109.47066 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47079 * 64.90153 * 4 3 2 6 6 C 1.36861 * 119.99759 * 264.52995 * 5 4 3 7 7 H 1.08003 * 119.99794 * 126.70186 * 6 5 4 8 8 C 1.38990 * 120.00346 * 306.70372 * 6 5 4 9 9 N 1.31406 * 120.00544 * 183.09085 * 8 6 5 10 10 Si 1.86802 * 120.00100 * 3.08948 * 8 6 5 11 11 H 1.48498 * 109.47475 * 94.38693 * 10 8 6 12 12 H 1.48502 * 109.47256 * 214.39399 * 10 8 6 13 13 H 1.48501 * 109.46933 * 334.39197 * 10 8 6 14 14 C 1.34774 * 120.00270 * 84.53244 * 5 4 3 15 15 O 1.21785 * 119.99886 * 4.66068 * 14 5 4 16 16 C 1.46282 * 120.00358 * 184.65868 * 14 5 4 17 17 C 1.36024 * 125.00000 * 173.52866 * 16 14 5 18 18 C 1.38665 * 115.18985 * 179.97438 * 17 16 14 19 19 O 1.36652 * 139.74007 * 179.64249 * 18 17 16 20 20 C 1.34074 * 109.73141 * 179.97438 * 19 18 17 21 21 C 1.34259 * 109.49223 * 0.37840 * 20 19 18 22 22 C 1.38103 * 113.39418 * 359.97120 * 18 17 16 23 23 S 1.75647 * 124.99765 * 353.48028 * 16 14 5 24 24 H 1.08999 * 109.46736 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46893 * 299.99561 * 1 2 3 26 26 H 1.08995 * 109.47234 * 59.99849 * 1 2 3 27 27 H 1.09000 * 109.47051 * 60.00185 * 3 2 1 28 28 H 1.08994 * 109.46800 * 300.00012 * 3 2 1 29 29 H 1.08999 * 109.47460 * 304.90159 * 4 3 2 30 30 H 1.08999 * 109.46735 * 184.89887 * 4 3 2 31 31 H 0.96993 * 120.00559 * 179.97438 * 9 8 6 32 32 H 1.07997 * 122.40469 * 359.96767 * 17 16 14 33 33 H 1.07997 * 125.25267 * 180.11796 * 20 19 18 34 34 H 1.08006 * 126.50845 * 179.77260 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9755 0.5624 -1.2518 6 6 4.2043 -0.7860 -1.3017 7 1 3.7194 -1.3885 -2.0556 8 6 5.0607 -1.3802 -0.3823 9 7 5.3280 -2.6640 -0.4675 10 14 5.8319 -0.3538 0.9747 11 1 5.0005 -0.4499 2.2013 12 1 7.1984 -0.8592 1.2619 13 1 5.9098 1.0639 0.5394 14 6 4.1550 1.3176 -2.3535 15 8 4.0340 2.5277 -2.2885 16 6 4.4951 0.6839 -3.6273 17 6 4.5760 1.3286 -4.8223 18 6 4.9156 0.5284 -5.9027 19 8 5.1220 0.6279 -7.2499 20 6 5.4440 -0.5744 -7.7484 21 6 5.4495 -1.4825 -6.7596 22 6 5.1131 -0.7957 -5.5638 23 16 4.8603 -1.0211 -3.8385 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8464 -0.8900 29 1 3.8516 0.5698 0.8419 30 1 3.9784 2.1768 0.0871 31 1 5.9259 -3.0785 0.1739 32 1 4.3891 2.3875 -4.9225 33 1 5.6610 -0.7812 -8.7860 34 1 5.6687 -2.5358 -6.8557 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590892187.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:34 Heat of formation + Delta-G solvation = -39.721816 kcal Electronic energy + Delta-G solvation = -21641.657250 eV Core-core repulsion = 18247.409452 eV Total energy + Delta-G solvation = -3394.247797 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.071 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.20932 -40.91005 -38.68686 -37.09435 -36.40037 -34.15577 -33.30689 -31.52272 -29.23570 -27.30196 -26.94462 -25.24819 -23.98606 -23.01704 -21.37462 -20.78902 -19.48018 -18.71237 -18.09477 -17.60459 -17.09131 -17.01738 -16.46070 -16.32744 -16.10811 -15.89798 -15.53758 -15.31134 -14.61854 -14.50221 -13.92136 -13.68522 -13.57275 -13.42178 -13.09966 -12.99717 -12.87852 -12.65780 -12.45374 -12.07274 -11.71371 -11.51549 -11.02675 -10.96876 -10.79661 -10.51936 -9.70330 -9.20120 -8.81544 -8.47899 -6.38180 -0.46452 0.70353 1.18516 1.25349 1.35175 1.39350 1.40652 1.58249 1.83068 2.16287 2.29685 2.56737 2.85272 3.02228 3.88627 3.91091 4.05937 4.12649 4.22667 4.35271 4.38056 4.51664 4.55077 4.60340 4.73933 4.77523 4.84814 4.87131 4.94477 5.12446 5.45859 5.52158 5.98079 6.05591 6.06770 6.34527 6.83406 7.20818 7.58743 8.54784 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.016979 B = 0.006174 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.682318 B = 4533.988562 C = 5130.302366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.058 3.942 4 C 0.098 3.902 5 N -0.461 5.461 6 C -0.336 4.336 7 H 0.098 0.902 8 C 0.053 3.947 9 N -0.870 5.870 10 Si 0.925 3.075 11 H -0.253 1.253 12 H -0.283 1.283 13 H -0.260 1.260 14 C 0.553 3.447 15 O -0.605 6.605 16 C -0.237 4.237 17 C -0.058 4.058 18 C -0.035 4.035 19 O -0.187 6.187 20 C 0.022 3.978 21 C -0.199 4.199 22 C -0.304 4.304 23 S 0.306 5.694 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.286 0.714 32 H 0.148 0.852 33 H 0.264 0.736 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.644 1.606 -5.296 6.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.020 4.020 4 C -0.024 4.024 5 N -0.181 5.181 6 C -0.470 4.470 7 H 0.114 0.886 8 C -0.157 4.157 9 N -0.504 5.504 10 Si 0.750 3.250 11 H -0.178 1.178 12 H -0.210 1.210 13 H -0.184 1.184 14 C 0.344 3.656 15 O -0.492 6.492 16 C -0.357 4.357 17 C -0.094 4.094 18 C -0.089 4.089 19 O -0.087 6.087 20 C -0.048 4.048 21 C -0.221 4.221 22 C -0.420 4.420 23 S 0.580 5.420 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.096 0.904 32 H 0.166 0.834 33 H 0.279 0.721 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -2.451 0.823 -4.354 5.064 hybrid contribution 0.052 1.415 -0.160 1.425 sum -2.399 2.238 -4.515 5.581 Atomic orbital electron populations 1.22883 0.80280 1.03363 1.00463 1.88077 1.20781 1.27647 1.95408 1.22848 0.93058 0.85121 1.00941 1.21949 0.94116 0.98845 0.87493 1.43458 1.58774 1.07488 1.08356 1.18704 1.27840 0.81742 1.18726 0.88550 1.25983 0.94308 0.96265 0.99147 1.69677 1.33417 1.11074 1.36186 0.86132 0.78273 0.80184 0.80408 1.17824 1.20984 1.18422 1.17315 0.79007 0.85537 0.83722 1.90657 1.58070 1.14105 1.86380 1.23855 1.15268 0.99890 0.96704 1.18841 1.02865 1.00423 0.87291 1.19264 1.11868 0.94209 0.83571 1.84256 1.71581 1.34213 1.18657 1.25064 0.98658 0.79915 1.01130 1.21368 1.09657 1.02161 0.88923 1.26605 1.09841 0.98721 1.06875 1.86260 1.63482 1.01752 0.90488 0.89100 0.92376 0.94291 0.89823 0.94066 0.91026 0.89004 0.90422 0.83412 0.72077 0.80760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 11.01 113.37 1.25 1.99 16 2 O -0.40 -15.60 10.43 -148.98 -1.55 -17.15 16 3 C 0.06 2.10 6.24 71.98 0.45 2.55 16 4 C 0.10 4.11 3.84 86.38 0.33 4.44 16 5 N -0.46 -22.05 2.04 -640.48 -1.31 -23.36 16 6 C -0.34 -16.92 6.98 84.09 0.59 -16.33 16 7 H 0.10 5.21 5.72 -15.20 -0.09 5.13 16 8 C 0.05 2.63 5.49 84.94 0.47 3.10 16 9 N -0.87 -44.90 13.96 21.67 0.30 -44.60 16 10 Si 0.93 39.82 24.79 68.60 1.70 41.52 16 11 H -0.25 -10.21 7.08 99.48 0.70 -9.50 16 12 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.26 -11.26 6.32 99.48 0.63 -10.63 16 14 C 0.55 27.11 7.55 86.33 0.65 27.76 16 15 O -0.60 -30.74 16.44 -4.62 -0.08 -30.81 16 16 C -0.24 -10.90 6.25 23.85 0.15 -10.75 16 17 C -0.06 -2.44 9.89 21.86 0.22 -2.23 16 18 C -0.03 -1.36 7.79 22.34 0.17 -1.19 16 19 O -0.19 -6.10 10.72 -25.67 -0.28 -6.38 16 20 C 0.02 0.51 12.00 66.91 0.80 1.32 16 21 C -0.20 -5.78 10.91 22.28 0.24 -5.54 16 22 C -0.30 -11.71 7.35 23.16 0.17 -11.54 16 23 S 0.31 13.41 18.51 -56.49 -1.05 12.37 16 24 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 2.99 3.94 -2.39 -0.01 2.98 16 30 H 0.09 3.69 7.45 -2.39 -0.02 3.68 16 31 H 0.29 13.72 8.31 -92.71 -0.77 12.95 16 32 H 0.15 5.88 8.01 -2.91 -0.02 5.86 16 33 H 0.26 2.80 8.06 -2.91 -0.02 2.78 16 34 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -64.56 302.96 4.22 -60.34 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.99 Total: 14.50 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 5.49 Total: -6.42 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: -1.00 Total: -67.96 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -1.91 Total: -54.34 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 1.70 Total: 41.52 kcal Atomic # 16 Polarization: 13.41 SS G_CDS: -1.05 Total: 12.37 kcal Total: -64.56 4.22 -60.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590892187.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.614 kcal (2) G-P(sol) polarization free energy of solvation -64.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds