Wall clock time and date at job start Tue Mar 31 2020 07:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86792 * 120.00302 * 2 1 4 4 H 1.48502 * 109.47233 * 270.00191 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99895 * 3 2 1 6 6 H 1.48499 * 109.47341 * 150.00255 * 3 2 1 7 7 C 1.38883 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 253.47014 * 7 2 1 9 9 N 1.37135 * 120.00115 * 73.47396 * 7 2 1 10 10 C 1.34779 * 120.00120 * 322.05529 * 9 7 2 11 11 O 1.21283 * 119.99517 * 34.12123 * 10 9 7 12 12 C 1.50693 * 120.00208 * 214.11183 * 10 9 7 13 13 H 1.09006 * 110.35497 * 313.92607 * 12 10 9 14 14 C 1.54948 * 110.30944 * 76.06961 * 12 10 9 15 15 C 1.55302 * 100.94241 * 155.35931 * 14 12 10 16 16 C 1.54383 * 102.25244 * 325.86438 * 15 14 12 17 17 O 1.43236 * 107.58968 * 21.36114 * 16 15 14 18 18 C 1.39813 * 119.99930 * 142.06100 * 9 7 2 19 19 C 1.38961 * 120.06249 * 126.02731 * 18 9 7 20 20 C 1.38074 * 119.93304 * 179.72088 * 19 18 9 21 21 C 1.38420 * 120.06345 * 0.55109 * 20 19 18 22 22 Cl 1.73599 * 119.93862 * 179.70086 * 21 20 19 23 23 C 1.38423 * 120.13026 * 359.72499 * 21 20 19 24 24 C 1.38068 * 120.06401 * 359.97438 * 23 21 20 25 25 H 0.97000 * 119.99415 * 4.92312 * 1 2 3 26 26 H 1.09001 * 111.12435 * 37.43352 * 14 12 10 27 27 H 1.09003 * 111.16107 * 273.29528 * 14 12 10 28 28 H 1.09000 * 110.84753 * 207.67882 * 15 14 12 29 29 H 1.08996 * 110.85119 * 84.05983 * 15 14 12 30 30 H 1.08995 * 109.83425 * 261.84349 * 16 15 14 31 31 H 1.08998 * 109.90303 * 140.91236 * 16 15 14 32 32 H 1.07998 * 120.03458 * 359.97155 * 19 18 9 33 33 H 1.07993 * 119.97233 * 180.27550 * 20 19 18 34 34 H 1.08002 * 119.97030 * 180.02562 * 23 21 20 35 35 H 1.07997 * 120.03619 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5459 1.4400 0.7000 7 6 2.0086 -1.2028 -0.0005 8 1 2.5091 -1.5379 0.8960 9 7 2.0589 -1.9650 -1.1394 10 6 0.9757 -2.0586 -1.9361 11 8 0.2325 -1.1086 -2.0629 12 6 0.6883 -3.3434 -2.6692 13 1 1.5954 -3.7224 -3.1401 14 6 0.1061 -4.3993 -1.6961 15 6 -0.6815 -5.3055 -2.6811 16 6 -1.1809 -4.2907 -3.7319 17 8 -0.3360 -3.1366 -3.6549 18 6 3.2336 -2.6452 -1.4741 19 6 3.2010 -4.0131 -1.7168 20 6 4.3617 -4.6811 -2.0528 21 6 5.5591 -3.9917 -2.1368 22 17 7.0178 -4.8362 -2.5518 23 6 5.5956 -2.6301 -1.8899 24 6 4.4371 -1.9557 -1.5596 25 1 -0.4849 0.8370 -0.0721 26 1 -0.5609 -3.9372 -0.9683 27 1 0.9002 -4.9565 -1.1990 28 1 -1.5200 -5.7878 -2.1786 29 1 -0.0241 -6.0452 -3.1379 30 1 -2.2113 -4.0098 -3.5143 31 1 -1.1196 -4.7279 -4.7285 32 1 2.2679 -4.5524 -1.6467 33 1 4.3363 -5.7433 -2.2459 34 1 6.5312 -2.0947 -1.9566 35 1 4.4662 -0.8935 -1.3667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592651497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:19 Heat of formation + Delta-G solvation = -13.042015 kcal Electronic energy + Delta-G solvation = -22046.183679 eV Core-core repulsion = 18651.049098 eV Total energy + Delta-G solvation = -3395.134581 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.13032 -38.59265 -37.45791 -36.03631 -34.26281 -32.76019 -31.92842 -30.69518 -29.18705 -28.60427 -25.29227 -23.15664 -22.20175 -21.68171 -21.35006 -19.59003 -17.82778 -17.08520 -16.65233 -15.72094 -15.19360 -15.07098 -14.66475 -14.43086 -14.24845 -13.74688 -13.50975 -13.11833 -12.93639 -12.82004 -12.46784 -12.26847 -11.84600 -11.50222 -11.42875 -11.25291 -11.21739 -10.99886 -10.87528 -10.69392 -10.62330 -10.32729 -10.18269 -9.45186 -9.00404 -8.76290 -8.52288 -7.76053 -7.46176 -7.00416 -3.76873 1.66689 1.82501 2.59549 3.17270 3.34450 3.37730 3.61149 3.86821 4.11295 4.28917 4.47517 4.64541 4.79449 5.01267 5.19611 5.30968 5.33977 5.46430 5.52925 5.68044 5.75960 5.82552 5.90671 5.97658 6.03465 6.13488 6.24239 6.41608 6.47735 6.64871 6.77777 7.09136 7.19559 7.22115 7.36670 8.06439 8.59529 8.89101 9.24291 9.78527 10.03470 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.007544 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.873730 B = 3710.467462 C = 5812.766305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.667 5.667 2 C 0.163 3.837 3 Si 0.798 3.202 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.474 4.474 8 H 0.102 0.898 9 N -0.408 5.408 10 C 0.479 3.521 11 O -0.478 6.478 12 C 0.050 3.950 13 H 0.087 0.913 14 C -0.141 4.141 15 C -0.155 4.155 16 C 0.050 3.950 17 O -0.360 6.360 18 C 0.185 3.815 19 C -0.190 4.190 20 C -0.082 4.082 21 C -0.090 4.090 22 Cl -0.100 7.100 23 C -0.087 4.087 24 C -0.129 4.129 25 H 0.279 0.721 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.544 -10.086 -3.733 11.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.285 5.285 2 C -0.068 4.068 3 Si 0.618 3.382 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.120 0.880 9 N -0.121 5.121 10 C 0.268 3.732 11 O -0.350 6.350 12 C -0.011 4.011 13 H 0.105 0.895 14 C -0.179 4.179 15 C -0.192 4.192 16 C -0.027 4.027 17 O -0.279 6.279 18 C 0.086 3.914 19 C -0.211 4.211 20 C -0.101 4.101 21 C -0.117 4.117 22 Cl -0.072 7.072 23 C -0.107 4.107 24 C -0.150 4.150 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.155 0.845 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.789 -9.361 -3.872 10.507 hybrid contribution 0.651 0.637 0.045 0.912 sum 3.440 -8.724 -3.827 10.129 Atomic orbital electron populations 1.70768 1.10075 1.30829 1.16865 1.25131 0.92533 0.99025 0.90127 0.87969 0.84670 0.86178 0.79423 1.19667 1.21214 1.18454 1.18194 1.45973 1.05293 0.89322 0.88005 1.40754 1.05310 1.44358 1.21679 1.20489 0.81109 0.88795 0.82765 1.90616 1.47540 1.37886 1.58938 1.23539 0.92155 0.96061 0.89323 0.89530 1.23258 1.00469 0.95922 0.98238 1.23127 1.00696 0.98331 0.97071 1.23095 0.95007 0.86240 0.98351 1.88504 1.43045 1.38252 1.58066 1.18032 0.88168 0.90634 0.94569 1.21565 0.98834 0.93382 1.07315 1.20654 0.90631 0.99300 0.99554 1.20551 0.86847 0.92948 1.11391 1.98302 1.37780 1.78412 1.92682 1.20755 0.98382 0.92059 0.99494 1.21020 0.91266 1.00394 1.02342 0.90991 0.89255 0.89043 0.90018 0.90575 0.91590 0.91792 0.84498 0.85923 0.85813 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.67 -17.97 11.52 55.49 0.64 -17.33 16 2 C 0.16 4.28 4.20 -17.48 -0.07 4.21 16 3 Si 0.80 18.77 29.69 -169.99 -5.05 13.73 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.47 -12.27 8.80 -14.94 -0.13 -12.41 16 8 H 0.10 2.66 8.06 -52.49 -0.42 2.24 16 9 N -0.41 -9.75 2.75 -58.98 -0.16 -9.91 16 10 C 0.48 11.78 6.43 -10.99 -0.07 11.71 16 11 O -0.48 -13.58 13.44 -13.49 -0.18 -13.77 16 12 C 0.05 0.99 2.81 -26.86 -0.08 0.91 16 13 H 0.09 1.58 5.65 -51.93 -0.29 1.29 16 14 C -0.14 -2.28 6.07 -24.48 -0.15 -2.43 16 15 C -0.15 -1.94 7.02 -24.79 -0.17 -2.11 16 16 C 0.05 0.74 7.79 37.88 0.30 1.03 16 17 O -0.36 -7.31 10.63 -54.27 -0.58 -7.89 16 18 C 0.19 3.79 5.41 -83.68 -0.45 3.34 16 19 C -0.19 -3.27 7.66 -39.37 -0.30 -3.58 16 20 C -0.08 -1.25 9.82 -39.57 -0.39 -1.64 16 21 C -0.09 -1.40 6.32 -39.45 -0.25 -1.65 16 22 Cl -0.10 -1.38 28.95 -51.86 -1.50 -2.88 16 23 C -0.09 -1.43 9.82 -39.58 -0.39 -1.82 16 24 C -0.13 -2.48 9.54 -39.38 -0.38 -2.85 16 25 H 0.28 7.02 8.32 -40.82 -0.34 6.68 16 26 H 0.09 1.63 8.05 -51.93 -0.42 1.21 16 27 H 0.09 1.31 5.79 -51.93 -0.30 1.01 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.14 2.18 3.19 -52.49 -0.17 2.01 16 33 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 35 H 0.13 2.62 8.01 -52.49 -0.42 2.20 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -29.52 305.76 -8.45 -37.97 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -3.69 Total: 2.76 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.54 Total: -7.30 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.48 Total: -27.24 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.76 Total: -21.65 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.05 Total: 13.73 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -1.50 Total: -2.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.52 -8.45 -37.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592651497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.929 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds