Wall clock time and date at job start Tue Mar 31 2020 07:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86792 * 120.00302 * 2 1 4 4 H 1.48502 * 109.47233 * 270.00191 * 3 2 1 5 5 H 1.48501 * 109.47279 * 29.99895 * 3 2 1 6 6 H 1.48499 * 109.47341 * 150.00255 * 3 2 1 7 7 C 1.38883 * 119.99572 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 253.47014 * 7 2 1 9 9 N 1.37135 * 120.00115 * 73.47396 * 7 2 1 10 10 C 1.34779 * 120.00120 * 322.05529 * 9 7 2 11 11 O 1.21283 * 119.99517 * 34.12123 * 10 9 7 12 12 C 1.50693 * 120.00208 * 214.11183 * 10 9 7 13 13 H 1.09006 * 110.35497 * 313.92607 * 12 10 9 14 14 C 1.54948 * 110.30944 * 76.06961 * 12 10 9 15 15 C 1.55302 * 100.94241 * 155.35931 * 14 12 10 16 16 C 1.54383 * 102.25244 * 325.86438 * 15 14 12 17 17 O 1.43236 * 107.58968 * 21.36114 * 16 15 14 18 18 C 1.39813 * 119.99930 * 142.06100 * 9 7 2 19 19 C 1.38961 * 120.06249 * 126.02731 * 18 9 7 20 20 C 1.38074 * 119.93304 * 179.72088 * 19 18 9 21 21 C 1.38420 * 120.06345 * 0.55109 * 20 19 18 22 22 Cl 1.73599 * 119.93862 * 179.70086 * 21 20 19 23 23 C 1.38423 * 120.13026 * 359.72499 * 21 20 19 24 24 C 1.38068 * 120.06401 * 359.97438 * 23 21 20 25 25 H 0.97000 * 119.99415 * 4.92312 * 1 2 3 26 26 H 1.09001 * 111.12435 * 37.43352 * 14 12 10 27 27 H 1.09003 * 111.16107 * 273.29528 * 14 12 10 28 28 H 1.09000 * 110.84753 * 207.67882 * 15 14 12 29 29 H 1.08996 * 110.85119 * 84.05983 * 15 14 12 30 30 H 1.08995 * 109.83425 * 261.84349 * 16 15 14 31 31 H 1.08998 * 109.90303 * 140.91236 * 16 15 14 32 32 H 1.07998 * 120.03458 * 359.97155 * 19 18 9 33 33 H 1.07993 * 119.97233 * 180.27550 * 20 19 18 34 34 H 1.08002 * 119.97030 * 180.02562 * 23 21 20 35 35 H 1.07997 * 120.03619 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4459 2.6526 0.7000 6 1 3.5459 1.4400 0.7000 7 6 2.0086 -1.2028 -0.0005 8 1 2.5091 -1.5379 0.8960 9 7 2.0589 -1.9650 -1.1394 10 6 0.9757 -2.0586 -1.9361 11 8 0.2325 -1.1086 -2.0629 12 6 0.6883 -3.3434 -2.6692 13 1 1.5954 -3.7224 -3.1401 14 6 0.1061 -4.3993 -1.6961 15 6 -0.6815 -5.3055 -2.6811 16 6 -1.1809 -4.2907 -3.7319 17 8 -0.3360 -3.1366 -3.6549 18 6 3.2336 -2.6452 -1.4741 19 6 3.2010 -4.0131 -1.7168 20 6 4.3617 -4.6811 -2.0528 21 6 5.5591 -3.9917 -2.1368 22 17 7.0178 -4.8362 -2.5518 23 6 5.5956 -2.6301 -1.8899 24 6 4.4371 -1.9557 -1.5596 25 1 -0.4849 0.8370 -0.0721 26 1 -0.5609 -3.9372 -0.9683 27 1 0.9002 -4.9565 -1.1990 28 1 -1.5200 -5.7878 -2.1786 29 1 -0.0241 -6.0452 -3.1379 30 1 -2.2113 -4.0098 -3.5143 31 1 -1.1196 -4.7279 -4.7285 32 1 2.2679 -4.5524 -1.6467 33 1 4.3363 -5.7433 -2.2459 34 1 6.5312 -2.0947 -1.9566 35 1 4.4662 -0.8935 -1.3667 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592651497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:18 Heat of formation + Delta-G solvation = -29.684468 kcal Electronic energy + Delta-G solvation = -22046.905350 eV Core-core repulsion = 18651.049098 eV Total energy + Delta-G solvation = -3395.856252 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.67688 -39.98416 -39.03682 -37.35173 -35.97353 -34.59319 -33.26710 -32.05817 -30.56669 -30.12574 -27.04462 -24.64546 -23.59207 -23.16669 -22.49977 -21.26474 -19.50185 -18.60293 -18.07464 -17.11685 -16.80341 -16.56994 -16.35195 -15.98474 -15.82359 -15.23176 -14.95235 -14.48266 -14.38940 -14.24225 -14.05953 -13.87195 -13.55379 -12.92781 -12.83961 -12.74236 -12.58523 -12.48055 -12.34683 -12.12957 -12.03901 -11.81316 -11.52576 -11.08819 -10.55195 -10.41762 -9.90136 -9.62733 -9.13153 -8.86636 -5.70835 0.25359 0.43620 1.24908 1.30286 1.42333 1.46244 1.89589 2.12778 2.47808 2.59730 2.82775 3.21999 3.51529 3.82430 3.89950 3.98789 4.06880 4.17575 4.21661 4.35844 4.43661 4.59350 4.68178 4.81282 4.82791 4.91423 5.00631 5.12222 5.21423 5.22996 5.27491 5.37500 5.63388 5.80394 6.03088 6.19220 6.76585 7.09597 7.43702 8.00175 8.13540 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.011302 B = 0.007544 C = 0.004816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.873730 B = 3710.467462 C = 5812.766305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.700 5.700 2 C 0.137 3.863 3 Si 0.847 3.153 4 H -0.290 1.290 5 H -0.280 1.280 6 H -0.251 1.251 7 C -0.503 4.503 8 H 0.088 0.912 9 N -0.421 5.421 10 C 0.459 3.541 11 O -0.540 6.540 12 C 0.058 3.942 13 H 0.104 0.896 14 C -0.139 4.139 15 C -0.137 4.137 16 C 0.036 3.964 17 O -0.399 6.399 18 C 0.156 3.844 19 C -0.177 4.177 20 C -0.074 4.074 21 C -0.075 4.075 22 Cl -0.071 7.071 23 C -0.084 4.084 24 C -0.143 4.143 25 H 0.278 0.722 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.093 0.907 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.755 -13.566 -4.831 15.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.320 5.320 2 C -0.092 4.092 3 Si 0.667 3.333 4 H -0.217 1.217 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.618 4.618 8 H 0.106 0.894 9 N -0.136 5.136 10 C 0.251 3.749 11 O -0.417 6.417 12 C -0.003 4.003 13 H 0.121 0.879 14 C -0.176 4.176 15 C -0.174 4.174 16 C -0.040 4.040 17 O -0.318 6.318 18 C 0.061 3.939 19 C -0.197 4.197 20 C -0.093 4.093 21 C -0.103 4.103 22 Cl -0.042 7.042 23 C -0.103 4.103 24 C -0.164 4.164 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.130 0.870 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.081 0.919 31 H 0.111 0.889 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.073 -12.883 -4.955 14.706 hybrid contribution 0.237 1.477 0.264 1.519 sum 5.310 -11.406 -4.691 13.427 Atomic orbital electron populations 1.70818 1.11196 1.31166 1.18839 1.25606 0.92710 1.01077 0.89829 0.87211 0.84171 0.83789 0.78163 1.21674 1.20548 1.17392 1.18047 1.46922 1.06357 0.90477 0.89402 1.40742 1.06555 1.45114 1.21215 1.21255 0.80611 0.90015 0.83064 1.90560 1.49631 1.40008 1.61527 1.23434 0.93043 0.93972 0.89861 0.87891 1.23241 1.00875 0.95638 0.97871 1.23143 1.01488 0.97500 0.95239 1.23441 0.94156 0.85527 1.00846 1.88462 1.43929 1.41330 1.58119 1.18412 0.87322 0.91969 0.96229 1.21792 1.00461 0.91980 1.05479 1.21055 0.89383 1.01083 0.97791 1.20809 0.88232 0.92799 1.08415 1.98329 1.36005 1.77609 1.92250 1.20970 0.98252 0.92734 0.98341 1.21062 0.92106 1.00099 1.03083 0.91043 0.92449 0.86977 0.87640 0.87225 0.91889 0.88909 0.83008 0.81963 0.83420 0.86724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -40.25 11.52 21.65 0.25 -40.00 16 2 C 0.14 7.59 4.20 84.91 0.36 7.95 16 3 Si 0.85 40.84 29.69 68.60 2.04 42.88 16 4 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.25 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.50 -27.53 8.80 84.02 0.74 -26.79 16 8 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 9 N -0.42 -20.91 2.75 -458.89 -1.26 -22.18 16 10 C 0.46 23.61 6.43 87.65 0.56 24.18 16 11 O -0.54 -32.82 13.44 15.17 0.20 -32.61 16 12 C 0.06 2.26 2.81 30.51 0.09 2.34 16 13 H 0.10 3.59 5.65 -2.38 -0.01 3.58 16 14 C -0.14 -4.30 6.07 32.05 0.19 -4.11 16 15 C -0.14 -2.95 7.02 31.85 0.22 -2.73 16 16 C 0.04 1.00 7.79 72.45 0.56 1.57 16 17 O -0.40 -16.29 10.63 -130.77 -1.39 -17.68 16 18 C 0.16 6.38 5.41 38.21 0.21 6.59 16 19 C -0.18 -5.62 7.66 22.40 0.17 -5.45 16 20 C -0.07 -1.92 9.82 22.27 0.22 -1.70 16 21 C -0.08 -2.03 6.32 22.36 0.14 -1.89 16 22 Cl -0.07 -1.60 28.95 -2.72 -0.08 -1.68 16 23 C -0.08 -2.52 9.82 22.27 0.22 -2.30 16 24 C -0.14 -5.43 9.54 22.40 0.21 -5.21 16 25 H 0.28 15.02 8.32 -92.71 -0.77 14.25 16 26 H 0.06 2.15 8.05 -2.39 -0.02 2.13 16 27 H 0.11 2.92 5.79 -2.39 -0.01 2.91 16 28 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.15 4.35 3.19 -2.91 -0.01 4.34 16 33 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 34 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.11 4.72 8.01 -2.91 -0.02 4.69 16 Total: -1.00 -70.04 305.76 4.78 -65.26 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 1.12 Total: 13.55 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 3.90 Total: -7.54 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -1.01 Total: -62.17 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -1.19 Total: -50.30 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.04 Total: 42.88 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.68 kcal Total: -70.04 4.78 -65.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592651497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.580 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds