Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48496 * 109.47322 * 90.00575 * 3 2 1 5 5 H 1.48503 * 109.47037 * 210.00205 * 3 2 1 6 6 H 1.48500 * 109.47027 * 330.00151 * 3 2 1 7 7 C 1.38887 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99808 * 167.14405 * 7 2 1 9 9 N 1.37132 * 119.99950 * 347.15242 * 7 2 1 10 10 C 1.34773 * 120.00440 * 131.58171 * 9 7 2 11 11 O 1.21280 * 120.00547 * 183.37675 * 10 9 7 12 12 C 1.50704 * 119.99513 * 3.37193 * 10 9 7 13 13 H 1.08997 * 110.32992 * 50.99092 * 12 10 9 14 14 C 1.54480 * 110.37495 * 288.73158 * 12 10 9 15 15 C 1.54505 * 104.06360 * 217.19203 * 14 12 10 16 16 C 1.54479 * 104.06585 * 0.02562 * 15 14 12 17 17 O 1.44430 * 110.36750 * 173.23821 * 12 10 9 18 18 C 1.39808 * 119.99748 * 311.57326 * 9 7 2 19 19 C 1.38963 * 120.06578 * 172.06695 * 18 9 7 20 20 C 1.38070 * 119.93582 * 179.79674 * 19 18 9 21 21 C 1.38417 * 120.06529 * 0.46192 * 20 19 18 22 22 Cl 1.73599 * 119.93732 * 179.77230 * 21 20 19 23 23 C 1.38427 * 120.12993 * 359.78970 * 21 20 19 24 24 C 1.38074 * 120.06077 * 359.97438 * 23 21 20 25 25 H 0.97005 * 119.99971 * 174.72015 * 1 2 3 26 26 H 1.08995 * 110.51449 * 335.84115 * 14 12 10 27 27 H 1.09004 * 110.50627 * 98.41222 * 14 12 10 28 28 H 1.09002 * 110.51016 * 118.65031 * 15 14 12 29 29 H 1.09000 * 110.51293 * 241.21787 * 15 14 12 30 30 H 1.09002 * 110.37291 * 142.80557 * 16 15 14 31 31 H 1.08998 * 110.37451 * 265.04045 * 16 15 14 32 32 H 1.07998 * 120.03030 * 359.97438 * 19 18 9 33 33 H 1.08000 * 119.96858 * 180.21324 * 20 19 18 34 34 H 1.07993 * 119.96598 * 179.97438 * 23 21 20 35 35 H 1.08004 * 120.02763 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4959 2.0464 1.4000 5 1 3.5458 1.4402 -0.7001 6 1 1.4456 2.6527 -0.7000 7 6 2.0087 -1.2028 -0.0005 8 1 3.0684 -1.2144 -0.2087 9 7 1.3488 -2.3756 0.2630 10 6 1.5188 -3.4408 -0.5450 11 8 0.8889 -4.4583 -0.3478 12 6 2.4917 -3.3676 -1.6936 13 1 3.4613 -3.0108 -1.3464 14 6 1.9444 -2.4434 -2.8038 15 6 2.3838 -3.1315 -4.1156 16 6 3.1440 -4.3904 -3.6428 17 8 2.6272 -4.6615 -2.3208 18 6 0.4998 -2.4664 1.3700 19 6 -0.2947 -3.5927 1.5476 20 6 -1.1291 -3.6814 2.6440 21 6 -1.1819 -2.6457 3.5609 22 17 -2.2366 -2.7582 4.9351 23 6 -0.3955 -1.5203 3.3839 24 6 0.4444 -1.4282 2.2919 25 1 -0.4850 -0.8365 -0.0773 26 1 0.8575 -2.3833 -2.7495 27 1 2.3853 -1.4496 -2.7252 28 1 1.5139 -3.4116 -4.7098 29 1 3.0416 -2.4776 -4.6881 30 1 2.9415 -5.2287 -4.3095 31 1 4.2148 -4.1924 -3.5975 32 1 -0.2574 -4.3990 0.8301 33 1 -1.7442 -4.5579 2.7844 34 1 -0.4391 -0.7137 4.1007 35 1 1.0574 -0.5497 2.1542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592651498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = -44.426900 kcal Electronic energy + Delta-G solvation = -21991.670427 eV Core-core repulsion = 18595.174895 eV Total energy + Delta-G solvation = -3396.495532 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34032 -38.81391 -37.32457 -35.96398 -35.16237 -31.97357 -31.70126 -30.17111 -29.92219 -28.08703 -24.99424 -23.64809 -22.12603 -21.44823 -21.05621 -19.72285 -18.31473 -16.88794 -16.15898 -15.95772 -15.76857 -14.95495 -14.77627 -14.39038 -14.02259 -13.83722 -13.47442 -13.36756 -12.85883 -12.72556 -12.56832 -12.37428 -11.76137 -11.44866 -11.26547 -11.14741 -11.07419 -10.89644 -10.85948 -10.46055 -10.42757 -10.22253 -10.06991 -9.57327 -9.48413 -8.89636 -8.37098 -8.20790 -7.37804 -6.64037 -4.61593 1.88500 2.15885 2.78518 3.09235 3.14107 3.30655 3.40422 3.63932 4.05385 4.52650 4.60740 4.79680 4.95409 5.08039 5.20040 5.47083 5.48513 5.60766 5.62757 5.76724 5.85418 5.92576 6.05541 6.21640 6.22718 6.32869 6.48398 6.48575 6.73536 6.89702 7.04593 7.11155 7.24780 7.31277 7.54043 7.86417 8.10087 8.63338 9.01469 9.26580 10.33237 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.006103 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.715860 B = 4586.868513 C = 6138.004538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.021 3.979 3 Si 1.077 2.923 4 H -0.278 1.278 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.450 4.450 8 H 0.090 0.910 9 N -0.390 5.390 10 C 0.497 3.503 11 O -0.542 6.542 12 C 0.081 3.919 13 H 0.089 0.911 14 C -0.123 4.123 15 C -0.156 4.156 16 C 0.043 3.957 17 O -0.356 6.356 18 C 0.167 3.833 19 C -0.178 4.178 20 C -0.101 4.101 21 C -0.078 4.078 22 Cl -0.106 7.106 23 C -0.099 4.099 24 C -0.110 4.110 25 H 0.282 0.718 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.183 0.817 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.791 -1.004 -2.314 4.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.191 4.191 3 Si 0.901 3.099 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.576 4.576 8 H 0.108 0.892 9 N -0.099 5.099 10 C 0.288 3.712 11 O -0.424 6.424 12 C 0.021 3.979 13 H 0.107 0.893 14 C -0.161 4.161 15 C -0.194 4.194 16 C -0.034 4.034 17 O -0.274 6.274 18 C 0.069 3.931 19 C -0.198 4.198 20 C -0.121 4.121 21 C -0.105 4.105 22 Cl -0.077 7.077 23 C -0.119 4.119 24 C -0.131 4.131 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.199 0.801 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.178 -0.087 -2.051 3.783 hybrid contribution 0.104 -1.230 0.052 1.235 sum 3.282 -1.317 -1.999 4.062 Atomic orbital electron populations 1.70663 1.06795 1.32260 1.38042 1.26567 0.96338 1.02672 0.93534 0.83355 0.74723 0.73895 0.77879 1.20438 1.20525 1.20325 1.20285 0.94933 0.84552 1.57849 0.89245 1.41147 1.38421 1.11720 1.18572 1.20568 0.84040 0.83633 0.82930 1.90226 1.48049 1.32664 1.71460 1.22521 0.98373 0.83894 0.93144 0.89314 1.22644 1.02438 0.99575 0.91436 1.22983 1.00776 0.97233 0.98397 1.23404 0.97283 0.97718 0.84962 1.89222 1.85644 1.26096 1.26452 1.18451 0.92704 0.94300 0.87606 1.22720 0.96547 1.00622 0.99874 1.20834 0.99657 0.97432 0.94152 1.20749 0.99487 0.98379 0.91889 1.98286 1.66451 1.98387 1.44604 1.20680 0.96559 0.96301 0.98323 1.20989 1.00154 0.99349 0.92610 0.90585 0.90851 0.88893 0.90950 0.90576 0.89334 0.92477 0.80142 0.86196 0.86081 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.45 12.20 55.49 0.68 -20.77 16 2 C 0.02 0.49 3.42 -17.48 -0.06 0.43 16 3 Si 1.08 20.29 29.94 -169.99 -5.09 15.20 16 4 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 6 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.45 -10.23 6.77 -14.94 -0.10 -10.33 16 8 H 0.09 1.95 7.19 -52.49 -0.38 1.57 16 9 N -0.39 -9.18 2.45 -58.97 -0.14 -9.33 16 10 C 0.50 11.50 6.87 -10.99 -0.08 11.42 16 11 O -0.54 -13.54 12.97 -13.56 -0.18 -13.72 16 12 C 0.08 1.57 2.91 -27.10 -0.08 1.49 16 13 H 0.09 1.62 7.47 -51.93 -0.39 1.23 16 14 C -0.12 -2.11 5.79 -25.16 -0.15 -2.26 16 15 C -0.16 -2.09 7.09 -25.16 -0.18 -2.26 16 16 C 0.04 0.60 7.63 37.93 0.29 0.89 16 17 O -0.36 -6.82 10.93 -54.35 -0.59 -7.41 16 18 C 0.17 3.94 5.00 -83.68 -0.42 3.52 16 19 C -0.18 -4.02 9.03 -39.37 -0.36 -4.38 16 20 C -0.10 -2.04 9.82 -39.58 -0.39 -2.43 16 21 C -0.08 -1.52 6.32 -39.45 -0.25 -1.77 16 22 Cl -0.11 -1.78 28.95 -51.86 -1.50 -3.28 16 23 C -0.10 -2.01 9.82 -39.57 -0.39 -2.40 16 24 C -0.11 -2.47 7.68 -39.37 -0.30 -2.77 16 25 H 0.28 7.58 6.80 -40.82 -0.28 7.30 16 26 H 0.07 1.42 7.86 -51.93 -0.41 1.02 16 27 H 0.09 1.56 7.84 -51.93 -0.41 1.15 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.18 4.30 4.57 -56.06 -0.26 4.05 16 33 H 0.12 2.13 8.06 -52.49 -0.42 1.71 16 34 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.14 3.29 5.72 -52.48 -0.30 2.99 16 LS Contribution 303.05 15.07 4.57 4.57 Total: -1.00 -26.76 303.05 -8.46 -35.22 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.75 Total: 10.35 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -2.45 Total: -10.84 kcal Atomic # 7 Polarization: -30.63 SS G_CDS: 0.53 Total: -30.10 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.77 Total: -21.13 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.09 Total: 15.20 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -1.50 Total: -3.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.76 -8.46 -35.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592651498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.204 kcal (2) G-P(sol) polarization free energy of solvation -26.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds