Wall clock time and date at job start Tue Mar 31 2020 07:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31427 * 1 3 3 Si 1.86800 * 119.99884 * 2 1 4 4 H 1.48496 * 109.47322 * 90.00575 * 3 2 1 5 5 H 1.48503 * 109.47037 * 210.00205 * 3 2 1 6 6 H 1.48500 * 109.47027 * 330.00151 * 3 2 1 7 7 C 1.38887 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99808 * 167.14405 * 7 2 1 9 9 N 1.37132 * 119.99950 * 347.15242 * 7 2 1 10 10 C 1.34773 * 120.00440 * 131.58171 * 9 7 2 11 11 O 1.21280 * 120.00547 * 183.37675 * 10 9 7 12 12 C 1.50704 * 119.99513 * 3.37193 * 10 9 7 13 13 H 1.08997 * 110.32992 * 50.99092 * 12 10 9 14 14 C 1.54480 * 110.37495 * 288.73158 * 12 10 9 15 15 C 1.54505 * 104.06360 * 217.19203 * 14 12 10 16 16 C 1.54479 * 104.06585 * 0.02562 * 15 14 12 17 17 O 1.44430 * 110.36750 * 173.23821 * 12 10 9 18 18 C 1.39808 * 119.99748 * 311.57326 * 9 7 2 19 19 C 1.38963 * 120.06578 * 172.06695 * 18 9 7 20 20 C 1.38070 * 119.93582 * 179.79674 * 19 18 9 21 21 C 1.38417 * 120.06529 * 0.46192 * 20 19 18 22 22 Cl 1.73599 * 119.93732 * 179.77230 * 21 20 19 23 23 C 1.38427 * 120.12993 * 359.78970 * 21 20 19 24 24 C 1.38074 * 120.06077 * 359.97438 * 23 21 20 25 25 H 0.97005 * 119.99971 * 174.72015 * 1 2 3 26 26 H 1.08995 * 110.51449 * 335.84115 * 14 12 10 27 27 H 1.09004 * 110.50627 * 98.41222 * 14 12 10 28 28 H 1.09002 * 110.51016 * 118.65031 * 15 14 12 29 29 H 1.09000 * 110.51293 * 241.21787 * 15 14 12 30 30 H 1.09002 * 110.37291 * 142.80557 * 16 15 14 31 31 H 1.08998 * 110.37451 * 265.04045 * 16 15 14 32 32 H 1.07998 * 120.03030 * 359.97438 * 19 18 9 33 33 H 1.08000 * 119.96858 * 180.21324 * 20 19 18 34 34 H 1.07993 * 119.96598 * 179.97438 * 23 21 20 35 35 H 1.08004 * 120.02763 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4959 2.0464 1.4000 5 1 3.5458 1.4402 -0.7001 6 1 1.4456 2.6527 -0.7000 7 6 2.0087 -1.2028 -0.0005 8 1 3.0684 -1.2144 -0.2087 9 7 1.3488 -2.3756 0.2630 10 6 1.5188 -3.4408 -0.5450 11 8 0.8889 -4.4583 -0.3478 12 6 2.4917 -3.3676 -1.6936 13 1 3.4613 -3.0108 -1.3464 14 6 1.9444 -2.4434 -2.8038 15 6 2.3838 -3.1315 -4.1156 16 6 3.1440 -4.3904 -3.6428 17 8 2.6272 -4.6615 -2.3208 18 6 0.4998 -2.4664 1.3700 19 6 -0.2947 -3.5927 1.5476 20 6 -1.1291 -3.6814 2.6440 21 6 -1.1819 -2.6457 3.5609 22 17 -2.2366 -2.7582 4.9351 23 6 -0.3955 -1.5203 3.3839 24 6 0.4444 -1.4282 2.2919 25 1 -0.4850 -0.8365 -0.0773 26 1 0.8575 -2.3833 -2.7495 27 1 2.3853 -1.4496 -2.7252 28 1 1.5139 -3.4116 -4.7098 29 1 3.0416 -2.4776 -4.6881 30 1 2.9415 -5.2287 -4.3095 31 1 4.2148 -4.1924 -3.5975 32 1 -0.2574 -4.3990 0.8301 33 1 -1.7442 -4.5579 2.7844 34 1 -0.4391 -0.7137 4.1007 35 1 1.0574 -0.5497 2.1542 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592651498.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:22 Heat of formation + Delta-G solvation = -57.779148 kcal Electronic energy + Delta-G solvation = -21992.249424 eV Core-core repulsion = 18595.174895 eV Total energy + Delta-G solvation = -3397.074528 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.02325 -40.27084 -38.93960 -37.59141 -36.82044 -33.71423 -33.07566 -31.80624 -31.46115 -29.60182 -26.78391 -25.09496 -23.80611 -22.99212 -22.36958 -21.41909 -19.99173 -18.50821 -17.80063 -17.49009 -17.31932 -16.40890 -16.34041 -15.93321 -15.58551 -15.41831 -15.09579 -14.70312 -14.49860 -14.31098 -14.18546 -14.02441 -13.41570 -12.78344 -12.69895 -12.60182 -12.49877 -12.40366 -12.23204 -11.88769 -11.81325 -11.76283 -11.60282 -11.18884 -10.89462 -10.61699 -10.11723 -9.89466 -9.17392 -8.42373 -6.45176 0.19718 0.46196 1.22571 1.53520 1.61748 1.76346 1.84311 2.07736 2.51103 2.82238 3.06460 3.22280 3.59119 3.79225 3.91992 3.97086 4.02286 4.17951 4.25344 4.38516 4.51328 4.55053 4.71869 4.79057 4.81871 4.96032 5.07409 5.08140 5.12805 5.20856 5.40374 5.49269 5.57735 5.76174 5.80256 6.01318 6.28456 6.86208 7.24709 7.49869 8.46779 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.015316 B = 0.006103 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.715860 B = 4586.868513 C = 6138.004538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C -0.007 4.007 3 Si 1.119 2.881 4 H -0.271 1.271 5 H -0.252 1.252 6 H -0.287 1.287 7 C -0.448 4.448 8 H 0.100 0.900 9 N -0.399 5.399 10 C 0.479 3.521 11 O -0.573 6.573 12 C 0.085 3.915 13 H 0.101 0.899 14 C -0.119 4.119 15 C -0.145 4.145 16 C 0.037 3.963 17 O -0.388 6.388 18 C 0.142 3.858 19 C -0.196 4.196 20 C -0.097 4.097 21 C -0.075 4.075 22 Cl -0.073 7.073 23 C -0.097 4.097 24 C -0.121 4.121 25 H 0.261 0.739 26 H 0.039 0.961 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.858 -0.291 -2.426 5.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.214 4.214 3 Si 0.938 3.062 4 H -0.197 1.197 5 H -0.176 1.176 6 H -0.212 1.212 7 C -0.575 4.575 8 H 0.117 0.883 9 N -0.108 5.108 10 C 0.272 3.728 11 O -0.457 6.457 12 C 0.025 3.975 13 H 0.118 0.882 14 C -0.158 4.158 15 C -0.182 4.182 16 C -0.039 4.039 17 O -0.307 6.307 18 C 0.044 3.956 19 C -0.216 4.216 20 C -0.117 4.117 21 C -0.103 4.103 22 Cl -0.045 7.045 23 C -0.116 4.116 24 C -0.142 4.142 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.115 0.885 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.183 0.817 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.264 0.611 -2.162 4.819 hybrid contribution -0.296 -1.533 0.165 1.570 sum 3.967 -0.922 -1.997 4.536 Atomic orbital electron populations 1.70791 1.07970 1.30769 1.40911 1.27807 0.96032 1.05431 0.92086 0.82860 0.74706 0.70235 0.78394 1.19674 1.17614 1.21250 1.20545 0.95298 0.84474 1.57134 0.88256 1.41364 1.38530 1.12106 1.18839 1.21370 0.84554 0.83182 0.83683 1.90200 1.49441 1.33618 1.72407 1.22498 0.97698 0.84851 0.92485 0.88194 1.22595 1.00227 0.99836 0.93099 1.22980 1.01608 0.97192 0.96467 1.23757 0.98550 0.98761 0.82869 1.89191 1.86300 1.26161 1.29012 1.18750 0.93395 0.95101 0.88304 1.22658 0.97762 1.00345 1.00855 1.21054 0.98944 0.98414 0.93251 1.20806 0.99283 0.97659 0.92545 1.98296 1.65240 1.98293 1.42636 1.20942 0.95650 0.97138 0.97903 1.20968 1.01022 0.98764 0.93441 0.92898 0.94183 0.88464 0.90458 0.87206 0.87204 0.90020 0.81673 0.83865 0.83717 0.85033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -45.22 12.20 21.65 0.26 -44.95 16 2 C -0.01 -0.33 3.42 84.91 0.29 -0.04 16 3 Si 1.12 39.87 29.94 68.60 2.05 41.93 16 4 H -0.27 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.25 -7.84 7.11 99.48 0.71 -7.13 16 6 H -0.29 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.45 -20.60 6.77 84.02 0.57 -20.03 16 8 H 0.10 4.26 7.19 -2.91 -0.02 4.24 16 9 N -0.40 -19.46 2.45 -458.88 -1.12 -20.58 16 10 C 0.48 23.05 6.87 87.66 0.60 23.65 16 11 O -0.57 -30.07 12.97 15.25 0.20 -29.88 16 12 C 0.09 3.32 2.91 30.35 0.09 3.41 16 13 H 0.10 3.61 7.47 -2.39 -0.02 3.59 16 14 C -0.12 -4.08 5.79 31.61 0.18 -3.90 16 15 C -0.14 -3.55 7.09 31.61 0.22 -3.32 16 16 C 0.04 0.92 7.63 72.48 0.55 1.48 16 17 O -0.39 -14.74 10.93 -130.70 -1.43 -16.17 16 18 C 0.14 6.92 5.00 38.22 0.19 7.11 16 19 C -0.20 -9.19 9.03 22.40 0.20 -8.99 16 20 C -0.10 -3.91 9.82 22.27 0.22 -3.69 16 21 C -0.08 -2.86 6.32 22.36 0.14 -2.72 16 22 Cl -0.07 -2.30 28.95 -2.72 -0.08 -2.38 16 23 C -0.10 -3.86 9.82 22.28 0.22 -3.64 16 24 C -0.12 -5.50 7.68 22.40 0.17 -5.33 16 25 H 0.26 14.60 6.80 -92.70 -0.63 13.97 16 26 H 0.04 1.61 7.86 -2.39 -0.02 1.59 16 27 H 0.10 3.18 7.84 -2.38 -0.02 3.16 16 28 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.17 8.32 4.57 -59.47 -0.27 8.05 16 33 H 0.14 4.95 8.06 -2.91 -0.02 4.92 16 34 H 0.15 4.96 8.06 -2.91 -0.02 4.94 16 35 H 0.13 6.19 5.72 -2.91 -0.02 6.18 16 Total: -1.00 -59.92 303.05 4.54 -55.38 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 1.00 Total: 32.68 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 3.65 Total: -16.02 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -0.86 Total: -65.53 kcal Atomic # 8 Polarization: -44.81 SS G_CDS: -1.23 Total: -46.05 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.05 Total: 41.93 kcal Atomic # 17 Polarization: -2.30 SS G_CDS: -0.08 Total: -2.38 kcal Total: -59.92 4.54 -55.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592651498.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.403 kcal (2) G-P(sol) polarization free energy of solvation -59.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds