Wall clock time and date at job start Tue Mar 31 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00374 * 2 1 4 4 H 1.48505 * 109.46961 * 266.47009 * 3 2 1 5 5 H 1.48505 * 109.46725 * 26.46769 * 3 2 1 6 6 H 1.48498 * 109.47158 * 146.46661 * 3 2 1 7 7 C 1.37879 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 353.60748 * 7 2 1 9 9 C 1.50701 * 120.00036 * 173.61088 * 7 2 1 10 10 O 1.42898 * 110.88558 * 330.06492 * 9 7 2 11 11 C 1.55405 * 111.06973 * 93.84692 * 9 7 2 12 12 C 1.54319 * 102.82570 * 153.48727 * 11 9 7 13 13 N 1.47021 * 107.40486 * 337.97608 * 12 11 9 14 14 C 1.34775 * 125.65115 * 178.82578 * 13 12 11 15 15 O 1.21557 * 120.00459 * 174.82416 * 14 13 12 16 16 C 1.47856 * 120.00020 * 354.83073 * 14 13 12 17 17 C 1.39601 * 120.13567 * 7.87110 * 16 14 13 18 18 C 1.37939 * 119.87635 * 179.97438 * 17 16 14 19 19 C 1.38357 * 120.16195 * 359.97438 * 18 17 16 20 20 C 1.38447 * 120.28050 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 119.93969 * 180.02562 * 20 19 18 22 22 C 1.38095 * 120.11665 * 359.78779 * 20 19 18 23 23 C 1.47424 * 108.70384 * 358.86370 * 13 12 11 24 24 H 0.96998 * 119.99660 * 0.02562 * 1 2 3 25 25 H 0.96702 * 114.00108 * 294.11273 * 10 9 7 26 26 H 1.09003 * 110.69333 * 35.19929 * 11 9 7 27 27 H 1.09000 * 110.85469 * 271.84848 * 11 9 7 28 28 H 1.09002 * 109.88467 * 218.47720 * 12 11 9 29 29 H 1.09007 * 109.88473 * 97.47314 * 12 11 9 30 30 H 1.07994 * 120.05822 * 0.02562 * 17 16 14 31 31 H 1.08002 * 119.91720 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.85901 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.08026 * 180.23079 * 22 20 19 34 34 H 1.08998 * 110.36947 * 142.96363 * 23 13 12 35 35 H 1.09003 * 110.36640 * 265.18360 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5714 2.0032 -1.3975 5 1 1.4113 2.6730 0.6240 6 1 3.5074 1.4627 0.7734 7 6 2.0045 -1.1941 -0.0005 8 1 1.4695 -2.1266 0.1032 9 6 3.5045 -1.1982 -0.1458 10 8 3.9443 -0.0811 -0.9208 11 6 4.2003 -1.2170 1.2437 12 6 5.5550 -1.8904 0.9393 13 7 5.3920 -2.6665 -0.2987 14 6 6.3566 -3.3828 -0.9094 15 8 6.0861 -4.0636 -1.8795 16 6 7.7438 -3.3407 -0.3995 17 6 8.0283 -2.6954 0.8053 18 6 9.3243 -2.6599 1.2763 19 6 10.3418 -3.2624 0.5579 20 6 10.0669 -3.9050 -0.6371 21 17 11.3502 -4.6586 -1.5309 22 6 8.7728 -3.9519 -1.1169 23 6 3.9991 -2.5307 -0.7618 24 1 -0.4849 0.8401 -0.0004 25 1 3.6570 -0.1053 -1.8439 26 1 3.6254 -1.8108 1.9543 27 1 4.3485 -0.2037 1.6172 28 1 5.8318 -2.5536 1.7589 29 1 6.3242 -1.1304 0.8019 30 1 7.2351 -2.2257 1.3678 31 1 9.5453 -2.1605 2.2080 32 1 11.3548 -3.2319 0.9315 33 1 8.5584 -4.4566 -2.0474 34 1 3.9642 -2.4814 -1.8502 35 1 3.3963 -3.3642 -0.4010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:39 Heat of formation + Delta-G solvation = -36.590090 kcal Electronic energy + Delta-G solvation = -21371.187940 eV Core-core repulsion = 17975.032238 eV Total energy + Delta-G solvation = -3396.155702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.50061 -38.79125 -37.56261 -36.63816 -35.04901 -32.44558 -31.67937 -31.14713 -30.28719 -28.45722 -25.72537 -24.11411 -22.89703 -22.09264 -20.10699 -19.82492 -17.68465 -17.43343 -16.66524 -15.93867 -15.62974 -15.25523 -15.02981 -14.66082 -14.60898 -13.98097 -13.87606 -13.65683 -13.31792 -12.75613 -12.68389 -12.39618 -12.01836 -11.88869 -11.78804 -11.59200 -11.21830 -11.13179 -10.98697 -10.56817 -10.36964 -10.32100 -9.75078 -9.31571 -9.29393 -9.00024 -8.75308 -8.60471 -8.24145 -6.25764 -4.38634 0.60013 0.95132 1.84029 2.79627 3.19840 3.40142 3.47755 3.63656 3.65306 4.39978 4.43140 4.55464 4.75299 4.86126 4.93825 5.02212 5.09383 5.19708 5.32128 5.37702 5.56558 5.59998 5.71778 5.90863 5.95513 6.01675 6.06376 6.33010 6.40877 6.45541 6.59567 6.60333 6.93936 7.36253 7.74634 8.04176 8.30296 8.53188 8.74085 9.34717 10.82973 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.003716 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.157837 B = 7533.661677 C = 7843.892201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.074 3.926 3 Si 0.954 3.046 4 H -0.294 1.294 5 H -0.327 1.327 6 H -0.271 1.271 7 C -0.555 4.555 8 H 0.082 0.918 9 C 0.220 3.780 10 O -0.558 6.558 11 C -0.124 4.124 12 C 0.088 3.912 13 N -0.600 5.600 14 C 0.566 3.434 15 O -0.544 6.544 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.093 4.093 20 C -0.046 4.046 21 Cl -0.069 7.069 22 C -0.055 4.055 23 C 0.090 3.910 24 H 0.268 0.732 25 H 0.373 0.627 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.171 0.829 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.145 0.855 34 H 0.073 0.927 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.353 -4.343 3.298 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.132 4.132 3 Si 0.790 3.210 4 H -0.221 1.221 5 H -0.258 1.258 6 H -0.197 1.197 7 C -0.592 4.592 8 H 0.100 0.900 9 C 0.180 3.820 10 O -0.366 6.366 11 C -0.162 4.162 12 C -0.035 4.035 13 N -0.332 5.332 14 C 0.355 3.645 15 O -0.423 6.423 16 C -0.114 4.114 17 C -0.137 4.137 18 C -0.134 4.134 19 C -0.112 4.112 20 C -0.073 4.073 21 Cl -0.040 7.040 22 C -0.075 4.075 23 C -0.032 4.032 24 H 0.077 0.923 25 H 0.221 0.779 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.187 0.813 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.163 0.837 34 H 0.091 0.909 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.451 -4.579 3.228 20.242 hybrid contribution 0.309 0.564 -0.593 0.875 sum 19.760 -4.015 2.635 20.335 Atomic orbital electron populations 1.69963 1.06874 1.27941 1.47235 1.25140 0.94919 1.00577 0.92531 0.85587 0.77582 0.79829 0.77988 1.22146 1.25845 1.19711 1.21092 0.88264 0.95557 1.54261 0.89968 1.20298 0.93820 0.80735 0.87164 1.86112 1.78677 1.46301 1.25557 1.23096 0.92753 1.01117 0.99249 1.22617 1.00356 0.94467 0.86025 1.48434 1.11547 1.47386 1.25838 1.17785 0.83880 0.79736 0.83098 1.90765 1.82574 1.41419 1.27558 1.19935 0.93655 1.01280 0.96510 1.23042 0.98964 0.96327 0.95389 1.21153 0.92171 0.99750 1.00305 1.21263 1.00522 0.96368 0.92998 1.20780 0.89487 1.01709 0.95289 1.98373 1.49868 1.80791 1.74987 1.21142 0.89703 0.96590 1.00056 1.23211 0.79133 1.00787 1.00081 0.92299 0.77888 0.89310 0.89866 0.91206 0.90826 0.81280 0.84431 0.84710 0.83730 0.90895 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.96 55.43 0.77 -24.71 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.95 22.48 24.83 -169.99 -4.22 18.25 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.33 -7.97 7.11 56.52 0.40 -7.57 16 6 H -0.27 -6.17 5.57 56.52 0.31 -5.85 16 7 C -0.55 -14.01 8.90 -34.44 -0.31 -14.32 16 8 H 0.08 2.27 8.00 -52.49 -0.42 1.85 16 9 C 0.22 4.57 0.70 -89.49 -0.06 4.50 16 10 O -0.56 -11.53 8.47 -35.23 -0.30 -11.83 16 11 C -0.12 -2.19 5.96 -24.76 -0.15 -2.34 16 12 C 0.09 1.27 4.87 -3.07 -0.01 1.26 16 13 N -0.60 -10.32 3.33 -175.11 -0.58 -10.90 16 14 C 0.57 9.90 7.81 -12.33 -0.10 9.81 16 15 O -0.54 -11.17 16.67 5.32 0.09 -11.09 16 16 C -0.11 -1.56 5.87 -104.97 -0.62 -2.18 16 17 C -0.12 -1.36 8.59 -39.18 -0.34 -1.70 16 18 C -0.12 -1.06 10.03 -39.65 -0.40 -1.46 16 19 C -0.09 -0.87 9.82 -39.46 -0.39 -1.26 16 20 C -0.05 -0.52 6.31 -39.56 -0.25 -0.77 16 21 Cl -0.07 -0.71 28.95 -51.86 -1.50 -2.21 16 22 C -0.06 -0.73 9.37 -39.15 -0.37 -1.10 16 23 C 0.09 1.73 6.06 -2.53 -0.02 1.71 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 25 H 0.37 6.98 8.88 45.56 0.40 7.38 16 26 H 0.09 1.53 8.04 -51.93 -0.42 1.11 16 27 H 0.08 1.49 6.83 -51.93 -0.35 1.14 16 28 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16 29 H 0.07 0.98 6.66 -51.93 -0.35 0.64 16 30 H 0.17 1.77 2.77 -57.01 -0.16 1.61 16 31 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.14 1.98 7.67 -52.49 -0.40 1.58 16 34 H 0.07 1.44 8.09 -51.93 -0.42 1.02 16 35 H 0.08 1.50 7.99 -51.93 -0.41 1.09 16 LS Contribution 301.92 15.07 4.55 4.55 Total: -1.00 -30.75 301.92 -7.24 -37.98 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -2.95 Total: 5.92 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -3.10 Total: -5.96 kcal Atomic # 7 Polarization: -35.80 SS G_CDS: 0.19 Total: -35.61 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.21 Total: -22.91 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.22 Total: 18.25 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.75 -7.24 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.392 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds