Wall clock time and date at job start Tue Mar 31 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00374 * 2 1 4 4 H 1.48505 * 109.46961 * 266.47009 * 3 2 1 5 5 H 1.48505 * 109.46725 * 26.46769 * 3 2 1 6 6 H 1.48498 * 109.47158 * 146.46661 * 3 2 1 7 7 C 1.37879 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00216 * 353.60748 * 7 2 1 9 9 C 1.50701 * 120.00036 * 173.61088 * 7 2 1 10 10 O 1.42898 * 110.88558 * 330.06492 * 9 7 2 11 11 C 1.55405 * 111.06973 * 93.84692 * 9 7 2 12 12 C 1.54319 * 102.82570 * 153.48727 * 11 9 7 13 13 N 1.47021 * 107.40486 * 337.97608 * 12 11 9 14 14 C 1.34775 * 125.65115 * 178.82578 * 13 12 11 15 15 O 1.21557 * 120.00459 * 174.82416 * 14 13 12 16 16 C 1.47856 * 120.00020 * 354.83073 * 14 13 12 17 17 C 1.39601 * 120.13567 * 7.87110 * 16 14 13 18 18 C 1.37939 * 119.87635 * 179.97438 * 17 16 14 19 19 C 1.38357 * 120.16195 * 359.97438 * 18 17 16 20 20 C 1.38447 * 120.28050 * 359.97438 * 19 18 17 21 21 Cl 1.73598 * 119.93969 * 180.02562 * 20 19 18 22 22 C 1.38095 * 120.11665 * 359.78779 * 20 19 18 23 23 C 1.47424 * 108.70384 * 358.86370 * 13 12 11 24 24 H 0.96998 * 119.99660 * 0.02562 * 1 2 3 25 25 H 0.96702 * 114.00108 * 294.11273 * 10 9 7 26 26 H 1.09003 * 110.69333 * 35.19929 * 11 9 7 27 27 H 1.09000 * 110.85469 * 271.84848 * 11 9 7 28 28 H 1.09002 * 109.88467 * 218.47720 * 12 11 9 29 29 H 1.09007 * 109.88473 * 97.47314 * 12 11 9 30 30 H 1.07994 * 120.05822 * 0.02562 * 17 16 14 31 31 H 1.08002 * 119.91720 * 179.97438 * 18 17 16 32 32 H 1.08005 * 119.85901 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.08026 * 180.23079 * 22 20 19 34 34 H 1.08998 * 110.36947 * 142.96363 * 23 13 12 35 35 H 1.09003 * 110.36640 * 265.18360 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.5714 2.0032 -1.3975 5 1 1.4113 2.6730 0.6240 6 1 3.5074 1.4627 0.7734 7 6 2.0045 -1.1941 -0.0005 8 1 1.4695 -2.1266 0.1032 9 6 3.5045 -1.1982 -0.1458 10 8 3.9443 -0.0811 -0.9208 11 6 4.2003 -1.2170 1.2437 12 6 5.5550 -1.8904 0.9393 13 7 5.3920 -2.6665 -0.2987 14 6 6.3566 -3.3828 -0.9094 15 8 6.0861 -4.0636 -1.8795 16 6 7.7438 -3.3407 -0.3995 17 6 8.0283 -2.6954 0.8053 18 6 9.3243 -2.6599 1.2763 19 6 10.3418 -3.2624 0.5579 20 6 10.0669 -3.9050 -0.6371 21 17 11.3502 -4.6586 -1.5309 22 6 8.7728 -3.9519 -1.1169 23 6 3.9991 -2.5307 -0.7618 24 1 -0.4849 0.8401 -0.0004 25 1 3.6570 -0.1053 -1.8439 26 1 3.6254 -1.8108 1.9543 27 1 4.3485 -0.2037 1.6172 28 1 5.8318 -2.5536 1.7589 29 1 6.3242 -1.1304 0.8019 30 1 7.2351 -2.2257 1.3678 31 1 9.5453 -2.1605 2.2080 32 1 11.3548 -3.2319 0.9315 33 1 8.5584 -4.4566 -2.0474 34 1 3.9642 -2.4814 -1.8502 35 1 3.3963 -3.3642 -0.4010 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843256.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:38 Heat of formation + Delta-G solvation = -58.276249 kcal Electronic energy + Delta-G solvation = -21372.128323 eV Core-core repulsion = 17975.032238 eV Total energy + Delta-G solvation = -3397.096084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.71522 -39.93263 -38.96380 -37.47815 -36.55989 -34.45529 -32.80784 -32.03478 -31.62657 -29.91443 -27.39036 -25.42501 -23.86190 -23.21363 -21.63036 -21.12329 -19.48525 -18.62296 -17.66685 -17.23440 -17.08624 -16.83058 -16.44074 -15.93528 -15.78738 -15.23097 -15.00935 -14.78990 -14.52820 -14.36276 -14.06031 -13.86468 -13.47874 -13.36355 -12.80945 -12.73160 -12.54284 -12.50095 -12.22345 -12.07079 -11.98615 -11.79522 -11.22449 -11.08221 -10.62792 -10.39997 -10.18541 -9.83862 -9.64662 -8.33539 -6.47899 -0.31793 0.11522 1.01456 1.52652 1.55802 1.68251 1.76741 1.90092 2.46490 2.66508 2.97078 3.31011 3.48190 3.70937 3.80704 3.99128 4.01939 4.11489 4.21157 4.28792 4.37483 4.49063 4.51493 4.77306 4.78104 4.93934 5.04264 5.13994 5.16931 5.19720 5.26070 5.37140 5.52739 5.67336 6.04096 6.43005 6.58403 6.87494 6.97229 7.29749 8.79429 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.003716 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.157837 B = 7533.661677 C = 7843.892201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.023 3.977 3 Si 1.014 2.986 4 H -0.288 1.288 5 H -0.340 1.340 6 H -0.251 1.251 7 C -0.550 4.550 8 H 0.044 0.956 9 C 0.217 3.783 10 O -0.557 6.557 11 C -0.122 4.122 12 C 0.091 3.909 13 N -0.602 5.602 14 C 0.562 3.438 15 O -0.589 6.589 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.102 4.102 19 C -0.080 4.080 20 C -0.053 4.053 21 Cl -0.065 7.065 22 C -0.071 4.071 23 C 0.096 3.904 24 H 0.267 0.733 25 H 0.379 0.621 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.182 0.818 31 H 0.180 0.820 32 H 0.166 0.834 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.153 -3.253 5.357 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.177 4.177 3 Si 0.848 3.152 4 H -0.216 1.216 5 H -0.272 1.272 6 H -0.176 1.176 7 C -0.588 4.588 8 H 0.062 0.938 9 C 0.176 3.824 10 O -0.366 6.366 11 C -0.160 4.160 12 C -0.030 4.030 13 N -0.333 5.333 14 C 0.353 3.647 15 O -0.471 6.471 16 C -0.136 4.136 17 C -0.133 4.133 18 C -0.119 4.119 19 C -0.099 4.099 20 C -0.079 4.079 21 Cl -0.036 7.036 22 C -0.091 4.091 23 C -0.027 4.027 24 H 0.076 0.924 25 H 0.229 0.771 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.199 0.801 31 H 0.197 0.803 32 H 0.184 0.816 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 23.288 -3.497 5.302 24.138 hybrid contribution -0.836 0.113 -1.249 1.507 sum 22.452 -3.384 4.053 23.064 Atomic orbital electron populations 1.70092 1.08691 1.28618 1.50104 1.25919 0.95346 1.03898 0.92505 0.84611 0.76710 0.75627 0.78300 1.21581 1.27248 1.17591 1.21335 0.91004 0.93827 1.52591 0.93795 1.20197 0.91381 0.81459 0.89322 1.86070 1.78276 1.46065 1.26194 1.23015 0.94233 1.02002 0.96704 1.22842 0.98914 0.95374 0.85852 1.48430 1.10353 1.47773 1.26716 1.18396 0.85163 0.78711 0.82414 1.90732 1.83471 1.43319 1.29626 1.19689 0.91428 1.04057 0.98434 1.23155 1.00523 0.95583 0.94047 1.21605 0.90698 0.98435 1.01205 1.21702 1.02263 0.94339 0.91590 1.20887 0.88771 1.02119 0.96143 1.98376 1.49288 1.80801 1.75150 1.21056 0.90822 0.97348 0.99870 1.22864 0.80882 0.99661 0.99250 0.92400 0.77124 0.89243 0.89328 0.87363 0.88426 0.80142 0.80274 0.81629 0.85611 0.92172 0.91852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.75 13.96 21.45 0.30 -55.45 16 2 C 0.02 1.26 5.47 84.66 0.46 1.72 16 3 Si 1.01 45.88 24.83 68.60 1.70 47.58 16 4 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.34 -16.03 7.11 99.48 0.71 -15.33 16 6 H -0.25 -10.43 5.57 99.48 0.55 -9.87 16 7 C -0.55 -28.43 8.90 25.60 0.23 -28.20 16 8 H 0.04 2.55 8.00 -2.91 -0.02 2.53 16 9 C 0.22 8.85 0.70 -10.06 -0.01 8.84 16 10 O -0.56 -22.02 8.47 -148.98 -1.26 -23.28 16 11 C -0.12 -3.98 5.96 31.87 0.19 -3.79 16 12 C 0.09 2.31 4.87 86.73 0.42 2.74 16 13 N -0.60 -19.91 3.33 -826.19 -2.75 -22.66 16 14 C 0.56 19.44 7.81 86.79 0.68 20.11 16 15 O -0.59 -25.01 16.67 -3.89 -0.06 -25.08 16 16 C -0.13 -3.52 5.87 -20.09 -0.12 -3.64 16 17 C -0.12 -2.13 8.59 22.53 0.19 -1.93 16 18 C -0.10 -1.28 10.03 22.23 0.22 -1.06 16 19 C -0.08 -1.13 9.82 22.35 0.22 -0.91 16 20 C -0.05 -1.05 6.31 22.29 0.14 -0.91 16 21 Cl -0.07 -1.22 28.95 -2.72 -0.08 -1.30 16 22 C -0.07 -1.82 9.37 22.55 0.21 -1.61 16 23 C 0.10 3.76 6.06 86.86 0.53 4.29 16 24 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 25 H 0.38 13.83 8.88 -74.06 -0.66 13.17 16 26 H 0.09 2.91 8.04 -2.39 -0.02 2.89 16 27 H 0.09 2.84 6.83 -2.39 -0.02 2.82 16 28 H 0.11 2.00 6.80 -2.39 -0.02 1.98 16 29 H 0.10 2.10 6.66 -2.38 -0.02 2.08 16 30 H 0.18 2.79 2.77 -7.16 -0.02 2.77 16 31 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 32 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 33 H 0.13 3.58 7.67 -2.91 -0.02 3.56 16 34 H 0.06 2.46 8.09 -2.39 -0.02 2.44 16 35 H 0.06 2.60 7.99 -2.39 -0.02 2.58 16 Total: -1.00 -70.01 301.92 1.54 -68.47 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.32 Total: 16.05 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 3.37 Total: -4.35 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -2.45 Total: -78.11 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -1.33 Total: -48.36 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.70 Total: 47.58 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -70.01 1.54 -68.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843256.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.198 kcal (2) G-P(sol) polarization free energy of solvation -70.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds