Wall clock time and date at job start Tue Mar 31 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00323 * 2 1 4 4 H 1.48503 * 109.46680 * 269.99819 * 3 2 1 5 5 H 1.48493 * 109.46948 * 29.99683 * 3 2 1 6 6 H 1.48493 * 109.47000 * 149.99964 * 3 2 1 7 7 C 1.37884 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99493 * 0.27853 * 7 2 1 10 10 O 1.42895 * 110.64079 * 300.41956 * 9 7 2 11 11 C 1.55163 * 110.71778 * 177.28716 * 9 7 2 12 12 C 1.54909 * 101.58221 * 206.13514 * 11 9 7 13 13 N 1.47430 * 104.83222 * 37.00326 * 12 11 9 14 14 C 1.34777 * 125.64287 * 155.91088 * 13 12 11 15 15 O 1.21552 * 119.99417 * 176.29433 * 14 13 12 16 16 C 1.47844 * 120.00247 * 356.30454 * 14 13 12 17 17 C 1.39597 * 120.14216 * 27.17838 * 16 14 13 18 18 C 1.37945 * 119.87888 * 180.02562 * 17 16 14 19 19 C 1.38353 * 120.16075 * 0.03215 * 18 17 16 20 20 C 1.38450 * 120.28226 * 359.96843 * 19 18 17 21 21 Cl 1.73601 * 119.94307 * 180.02562 * 20 19 18 22 22 C 1.38106 * 120.11740 * 359.72512 * 20 19 18 23 23 C 1.47320 * 108.73758 * 335.71850 * 13 12 11 24 24 H 0.97007 * 119.99854 * 0.02562 * 1 2 3 25 25 H 0.96702 * 114.00186 * 59.30859 * 10 9 7 26 26 H 1.09007 * 111.00095 * 324.20711 * 11 9 7 27 27 H 1.08999 * 111.00664 * 88.01514 * 11 9 7 28 28 H 1.08997 * 110.37211 * 155.84517 * 12 11 9 29 29 H 1.09004 * 110.35948 * 278.16898 * 12 11 9 30 30 H 1.07998 * 120.05524 * 0.02908 * 17 16 14 31 31 H 1.08002 * 119.91340 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.85957 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.08065 * 180.27211 * 22 20 19 34 34 H 1.08998 * 110.06283 * 241.87451 * 23 13 12 35 35 H 1.08998 * 109.84589 * 120.60930 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 -0.0052 10 8 0.4078 -2.5990 1.1442 11 6 2.2320 -3.6993 -0.0722 12 6 1.3499 -4.7855 -0.7367 13 7 0.5315 -4.0560 -1.7225 14 6 -0.0315 -4.5897 -2.8246 15 8 -0.7443 -3.9070 -3.5341 16 6 0.2176 -6.0054 -3.1704 17 6 0.5186 -6.9293 -2.1682 18 6 0.7506 -8.2487 -2.4970 19 6 0.6862 -8.6578 -3.8171 20 6 0.3882 -7.7471 -4.8165 21 17 0.3091 -8.2700 -6.4699 22 6 0.1477 -6.4245 -4.4996 23 6 0.4268 -2.6481 -1.3015 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2492 -1.8928 1.2127 26 1 3.0959 -3.4634 -0.6937 27 1 2.5438 -4.0053 0.9265 28 1 1.9731 -5.5275 -1.2358 29 1 0.7118 -5.2631 0.0069 30 1 0.5697 -6.6116 -1.1373 31 1 0.9839 -8.9639 -1.7221 32 1 0.8691 -9.6919 -4.0692 33 1 -0.0890 -5.7156 -5.2791 34 1 -0.6151 -2.3916 -1.1099 35 1 0.8343 -1.9989 -2.0764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843406.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:41 Heat of formation + Delta-G solvation = -56.338873 kcal Electronic energy + Delta-G solvation = -21311.746838 eV Core-core repulsion = 17914.734764 eV Total energy + Delta-G solvation = -3397.012073 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22746 -38.56795 -37.20539 -36.54950 -34.47263 -32.25024 -31.48733 -31.02306 -29.97713 -27.88484 -25.53469 -23.98770 -22.75534 -22.12246 -19.87115 -19.42074 -17.35228 -17.16258 -16.51339 -15.88895 -15.46515 -15.04637 -14.87538 -14.53193 -14.16987 -13.89961 -13.63133 -13.21435 -13.01921 -12.90099 -12.31929 -12.16726 -11.76572 -11.68451 -11.53759 -11.35102 -11.13399 -11.05960 -10.78041 -10.71468 -10.54104 -10.23203 -9.57762 -9.38858 -9.18309 -8.89560 -8.71810 -8.38191 -8.01267 -6.33592 -4.42419 0.73264 1.02661 1.91224 2.95703 3.18454 3.26439 3.28703 3.44887 3.73139 4.23360 4.56467 4.63428 4.84610 4.93657 4.98082 5.16683 5.28586 5.37493 5.60014 5.64558 5.73499 5.88037 5.92394 6.04510 6.12827 6.17265 6.41000 6.51363 6.67997 6.76548 6.85538 7.18813 7.30367 7.68390 7.93945 8.06649 8.54914 8.62187 9.24979 9.34402 10.74245 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.003672 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.418017 B = 7622.486467 C = 8070.851159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.119 4.119 12 C 0.092 3.908 13 N -0.602 5.602 14 C 0.559 3.441 15 O -0.543 6.543 16 C -0.105 4.105 17 C -0.096 4.096 18 C -0.115 4.115 19 C -0.095 4.095 20 C -0.044 4.044 21 Cl -0.070 7.070 22 C -0.058 4.058 23 C 0.103 3.897 24 H 0.271 0.729 25 H 0.385 0.615 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -15.920 -4.731 16.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.395 6.395 11 C -0.157 4.157 12 C -0.031 4.031 13 N -0.334 5.334 14 C 0.347 3.653 15 O -0.422 6.422 16 C -0.108 4.108 17 C -0.115 4.115 18 C -0.133 4.133 19 C -0.114 4.114 20 C -0.071 4.071 21 Cl -0.041 7.041 22 C -0.078 4.078 23 C -0.018 4.018 24 H 0.081 0.919 25 H 0.236 0.764 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.167 0.833 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.087 0.913 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.101 -16.004 -5.193 16.956 hybrid contribution 0.015 1.356 -0.353 1.401 sum 2.116 -14.648 -5.546 15.805 Atomic orbital electron populations 1.69637 1.06029 1.28058 1.49636 1.25077 0.95054 0.99829 0.93284 0.86388 0.79803 0.82332 0.78333 1.20388 1.20947 1.19651 1.21512 0.93726 0.90064 1.52453 0.91455 1.19492 0.86164 0.92177 0.81400 1.86084 1.51725 1.54915 1.46751 1.22797 0.97605 0.94932 1.00351 1.22708 0.93537 0.95838 0.90976 1.48777 1.49497 1.12948 1.22151 1.17806 0.80673 0.86078 0.80714 1.90773 1.38248 1.62173 1.51033 1.20028 1.02700 0.94478 0.93596 1.22107 0.95690 0.92976 1.00707 1.21097 1.00489 0.95963 0.95758 1.21205 0.98748 0.99435 0.92045 1.20779 1.06020 0.94344 0.85908 1.98370 1.96960 1.90629 1.18158 1.21117 0.96172 0.94143 0.96346 1.23162 1.01991 0.77459 0.99208 0.91883 0.76406 0.90349 0.90287 0.91113 0.91173 0.83333 0.84446 0.84729 0.83908 0.91321 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.38 10.96 55.43 0.61 -22.77 16 2 C 0.07 1.81 5.27 -17.82 -0.09 1.72 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.54 -13.72 8.11 -34.44 -0.28 -14.00 16 8 H 0.07 1.68 7.77 -52.49 -0.41 1.28 16 9 C 0.25 5.78 0.85 -89.93 -0.08 5.70 16 10 O -0.59 -14.19 13.08 -35.23 -0.46 -14.65 16 11 C -0.12 -2.23 6.23 -24.58 -0.15 -2.38 16 12 C 0.09 1.50 5.01 -2.53 -0.01 1.49 16 13 N -0.60 -11.97 3.33 -171.39 -0.57 -12.54 16 14 C 0.56 11.05 7.65 -12.33 -0.09 10.95 16 15 O -0.54 -12.67 16.98 5.32 0.09 -12.58 16 16 C -0.10 -1.61 5.70 -104.97 -0.60 -2.21 16 17 C -0.10 -1.18 7.93 -39.18 -0.31 -1.49 16 18 C -0.11 -1.11 10.03 -39.65 -0.40 -1.51 16 19 C -0.10 -0.94 9.82 -39.46 -0.39 -1.33 16 20 C -0.04 -0.52 6.31 -39.55 -0.25 -0.77 16 21 Cl -0.07 -0.76 28.95 -51.86 -1.50 -2.26 16 22 C -0.06 -0.83 9.37 -39.14 -0.37 -1.19 16 23 C 0.10 2.42 5.39 -2.90 -0.02 2.40 16 24 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.38 9.66 7.24 45.56 0.33 9.99 16 26 H 0.08 1.42 8.03 -51.92 -0.42 1.01 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.07 0.95 6.16 -51.93 -0.32 0.63 16 29 H 0.07 1.07 7.29 -51.93 -0.38 0.69 16 30 H 0.15 1.71 4.56 -52.49 -0.24 1.47 16 31 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 33 H 0.14 2.10 7.88 -52.49 -0.41 1.69 16 34 H 0.07 1.77 8.00 -51.93 -0.42 1.36 16 35 H 0.07 1.77 7.81 -51.93 -0.41 1.37 16 LS Contribution 309.16 15.07 4.66 4.66 Total: -1.00 -28.70 309.16 -8.30 -37.01 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -3.07 Total: 10.68 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -3.04 Total: -2.63 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.04 Total: -35.32 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.37 Total: -27.23 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.70 -8.30 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843406.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.333 kcal (2) G-P(sol) polarization free energy of solvation -28.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds