Wall clock time and date at job start Tue Mar 31 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00323 * 2 1 4 4 H 1.48503 * 109.46680 * 269.99819 * 3 2 1 5 5 H 1.48493 * 109.46948 * 29.99683 * 3 2 1 6 6 H 1.48493 * 109.47000 * 149.99964 * 3 2 1 7 7 C 1.37884 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99493 * 0.27853 * 7 2 1 10 10 O 1.42895 * 110.64079 * 300.41956 * 9 7 2 11 11 C 1.55163 * 110.71778 * 177.28716 * 9 7 2 12 12 C 1.54909 * 101.58221 * 206.13514 * 11 9 7 13 13 N 1.47430 * 104.83222 * 37.00326 * 12 11 9 14 14 C 1.34777 * 125.64287 * 155.91088 * 13 12 11 15 15 O 1.21552 * 119.99417 * 176.29433 * 14 13 12 16 16 C 1.47844 * 120.00247 * 356.30454 * 14 13 12 17 17 C 1.39597 * 120.14216 * 27.17838 * 16 14 13 18 18 C 1.37945 * 119.87888 * 180.02562 * 17 16 14 19 19 C 1.38353 * 120.16075 * 0.03215 * 18 17 16 20 20 C 1.38450 * 120.28226 * 359.96843 * 19 18 17 21 21 Cl 1.73601 * 119.94307 * 180.02562 * 20 19 18 22 22 C 1.38106 * 120.11740 * 359.72512 * 20 19 18 23 23 C 1.47320 * 108.73758 * 335.71850 * 13 12 11 24 24 H 0.97007 * 119.99854 * 0.02562 * 1 2 3 25 25 H 0.96702 * 114.00186 * 59.30859 * 10 9 7 26 26 H 1.09007 * 111.00095 * 324.20711 * 11 9 7 27 27 H 1.08999 * 111.00664 * 88.01514 * 11 9 7 28 28 H 1.08997 * 110.37211 * 155.84517 * 12 11 9 29 29 H 1.09004 * 110.35948 * 278.16898 * 12 11 9 30 30 H 1.07998 * 120.05524 * 0.02908 * 17 16 14 31 31 H 1.08002 * 119.91340 * 179.97438 * 18 17 16 32 32 H 1.08000 * 119.85957 * 179.97438 * 19 18 17 33 33 H 1.07993 * 120.08065 * 180.27211 * 22 20 19 34 34 H 1.08998 * 110.06283 * 241.87451 * 23 13 12 35 35 H 1.08998 * 109.84589 * 120.60930 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4991 -0.0052 10 8 0.4078 -2.5990 1.1442 11 6 2.2320 -3.6993 -0.0722 12 6 1.3499 -4.7855 -0.7367 13 7 0.5315 -4.0560 -1.7225 14 6 -0.0315 -4.5897 -2.8246 15 8 -0.7443 -3.9070 -3.5341 16 6 0.2176 -6.0054 -3.1704 17 6 0.5186 -6.9293 -2.1682 18 6 0.7506 -8.2487 -2.4970 19 6 0.6862 -8.6578 -3.8171 20 6 0.3882 -7.7471 -4.8165 21 17 0.3091 -8.2700 -6.4699 22 6 0.1477 -6.4245 -4.4996 23 6 0.4268 -2.6481 -1.3015 24 1 -0.4850 0.8401 -0.0004 25 1 -0.2492 -1.8928 1.2127 26 1 3.0959 -3.4634 -0.6937 27 1 2.5438 -4.0053 0.9265 28 1 1.9731 -5.5275 -1.2358 29 1 0.7118 -5.2631 0.0069 30 1 0.5697 -6.6116 -1.1373 31 1 0.9839 -8.9639 -1.7221 32 1 0.8691 -9.6919 -4.0692 33 1 -0.0890 -5.7156 -5.2791 34 1 -0.6151 -2.3916 -1.1099 35 1 0.8343 -1.9989 -2.0764 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843406.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:41 Heat of formation + Delta-G solvation = -75.489430 kcal Electronic energy + Delta-G solvation = -21312.577268 eV Core-core repulsion = 17914.734764 eV Total energy + Delta-G solvation = -3397.842504 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57435 -39.82388 -38.82292 -37.46417 -36.21100 -34.21939 -32.67666 -31.99788 -31.46719 -29.56028 -27.28521 -25.39875 -23.78632 -23.37611 -21.50845 -20.88481 -19.16280 -18.55700 -17.60502 -17.43295 -16.84796 -16.66342 -16.30944 -15.89910 -15.60950 -14.94616 -14.83434 -14.75783 -14.66351 -14.40151 -13.81914 -13.57709 -13.42230 -12.96919 -12.83625 -12.71850 -12.55856 -12.34641 -12.31975 -12.19947 -12.08624 -11.96859 -11.17650 -11.11849 -10.66006 -10.30715 -10.17704 -9.82077 -9.65132 -8.28734 -6.44537 -0.27557 0.10742 1.01250 1.40179 1.42644 1.52098 1.66648 1.96879 2.36743 2.62178 2.98188 3.35783 3.72755 3.78692 3.94625 4.02603 4.12870 4.18663 4.26348 4.32190 4.52427 4.56824 4.65360 4.77592 4.97252 5.06403 5.08738 5.17434 5.20084 5.25890 5.34389 5.48044 5.66945 5.73011 6.02810 6.51703 6.63841 7.01062 7.26534 7.34297 8.77332 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.003672 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.418017 B = 7622.486467 C = 8070.851159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.069 0.931 9 C 0.234 3.766 10 O -0.586 6.586 11 C -0.114 4.114 12 C 0.097 3.903 13 N -0.606 5.606 14 C 0.553 3.447 15 O -0.596 6.596 16 C -0.128 4.128 17 C -0.094 4.094 18 C -0.096 4.096 19 C -0.079 4.079 20 C -0.049 4.049 21 Cl -0.064 7.064 22 C -0.074 4.074 23 C 0.119 3.881 24 H 0.270 0.730 25 H 0.377 0.623 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.159 0.841 31 H 0.183 0.817 32 H 0.170 0.830 33 H 0.122 0.878 34 H 0.032 0.968 35 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 -19.219 -3.997 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.087 0.913 9 C 0.193 3.807 10 O -0.394 6.394 11 C -0.152 4.152 12 C -0.024 4.024 13 N -0.337 5.337 14 C 0.344 3.656 15 O -0.479 6.479 16 C -0.131 4.131 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.097 4.097 20 C -0.075 4.075 21 Cl -0.035 7.035 22 C -0.094 4.094 23 C -0.004 4.004 24 H 0.080 0.920 25 H 0.227 0.773 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.129 0.871 29 H 0.106 0.894 30 H 0.177 0.823 31 H 0.200 0.800 32 H 0.188 0.812 33 H 0.140 0.860 34 H 0.051 0.949 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 3.858 -19.342 -4.442 20.217 hybrid contribution -0.538 2.297 -0.637 2.443 sum 3.320 -17.046 -5.080 18.094 Atomic orbital electron populations 1.69747 1.07142 1.28528 1.50237 1.25816 0.95778 1.02844 0.93082 0.85480 0.78928 0.78773 0.78034 1.20640 1.20723 1.18743 1.21879 0.94049 0.91397 1.52342 0.91313 1.19700 0.86680 0.93706 0.80583 1.86070 1.51645 1.54481 1.47228 1.22804 0.96989 0.93508 1.01850 1.22944 0.93400 0.95425 0.90639 1.48807 1.50121 1.11706 1.23103 1.18626 0.79401 0.87875 0.79678 1.90726 1.40507 1.64072 1.52564 1.19664 1.06367 0.92080 0.95024 1.22243 0.95154 0.93628 1.00182 1.21561 0.97948 0.95209 0.96662 1.21684 0.96003 1.00521 0.91528 1.20872 1.06034 0.93699 0.86935 1.98375 1.96930 1.90306 1.17855 1.21007 0.97532 0.95226 0.95631 1.22656 0.99522 0.79547 0.98638 0.92033 0.77345 0.89856 0.88486 0.87101 0.89395 0.82344 0.79952 0.81250 0.85973 0.94907 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.80 10.96 21.45 0.24 -49.56 16 2 C 0.03 1.33 5.27 84.66 0.45 1.78 16 3 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.56 -28.88 8.11 25.60 0.21 -28.67 16 8 H 0.07 3.44 7.77 -2.91 -0.02 3.42 16 9 C 0.23 11.04 0.85 -10.35 -0.01 11.03 16 10 O -0.59 -28.83 13.08 -148.98 -1.95 -30.77 16 11 C -0.11 -4.09 6.23 31.99 0.20 -3.89 16 12 C 0.10 2.95 5.01 86.85 0.44 3.38 16 13 N -0.61 -24.51 3.33 -814.43 -2.71 -27.23 16 14 C 0.55 22.60 7.65 86.79 0.66 23.26 16 15 O -0.60 -29.76 16.98 -3.88 -0.07 -29.83 16 16 C -0.13 -3.85 5.70 -20.09 -0.11 -3.96 16 17 C -0.09 -1.96 7.93 22.53 0.18 -1.79 16 18 C -0.10 -1.32 10.03 22.23 0.22 -1.09 16 19 C -0.08 -1.17 9.82 22.35 0.22 -0.95 16 20 C -0.05 -1.04 6.31 22.29 0.14 -0.90 16 21 Cl -0.06 -1.27 28.95 -2.72 -0.08 -1.35 16 22 C -0.07 -2.09 9.37 22.55 0.21 -1.88 16 23 C 0.12 5.91 5.39 86.67 0.47 6.38 16 24 H 0.27 14.09 8.31 -92.70 -0.77 13.32 16 25 H 0.38 19.64 7.24 -74.06 -0.54 19.10 16 26 H 0.08 2.89 8.03 -2.38 -0.02 2.87 16 27 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.11 2.53 6.16 -2.39 -0.01 2.51 16 29 H 0.09 2.41 7.29 -2.38 -0.02 2.39 16 30 H 0.16 2.97 4.56 -2.91 -0.01 2.96 16 31 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 32 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 33 H 0.12 3.83 7.88 -2.91 -0.02 3.81 16 34 H 0.03 1.81 8.00 -2.39 -0.02 1.79 16 35 H 0.03 1.85 7.81 -2.39 -0.02 1.83 16 Total: -1.00 -67.14 309.16 1.32 -65.82 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.60 Total: 26.36 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 3.27 Total: 2.70 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -2.48 Total: -76.79 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -2.01 Total: -60.60 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -67.14 1.32 -65.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843406.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.669 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds