Wall clock time and date at job start Tue Mar 31 2020 07:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48504 * 109.47211 * 270.00446 * 3 2 1 5 5 H 1.48498 * 109.46751 * 30.00060 * 3 2 1 6 6 H 1.48493 * 109.47166 * 150.00455 * 3 2 1 7 7 C 1.37878 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00200 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.78163 * 298.21353 * 9 7 2 11 11 C 1.55164 * 110.71911 * 174.97870 * 9 7 2 12 12 C 1.55127 * 101.48118 * 205.96867 * 11 9 7 13 13 N 1.47416 * 104.72617 * 37.29665 * 12 11 9 14 14 C 1.34784 * 125.64892 * 155.81133 * 13 12 11 15 15 O 1.21565 * 119.99638 * 185.45458 * 14 13 12 16 16 C 1.47782 * 120.00224 * 5.46352 * 14 13 12 17 17 C 1.39607 * 120.13049 * 204.54924 * 16 14 13 18 18 C 1.37901 * 119.86481 * 180.22874 * 17 16 14 19 19 C 1.38506 * 120.13244 * 359.46695 * 18 17 16 20 20 Cl 1.73596 * 119.86926 * 180.25497 * 19 18 17 21 21 C 1.38517 * 120.26230 * 0.55268 * 19 18 17 22 22 C 1.37891 * 120.13426 * 359.70493 * 21 19 18 23 23 C 1.47023 * 108.70272 * 335.55314 * 13 12 11 24 24 H 0.97000 * 119.99870 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99398 * 61.78915 * 10 9 7 26 26 H 1.09004 * 111.00535 * 324.20742 * 11 9 7 27 27 H 1.08997 * 111.00256 * 88.02525 * 11 9 7 28 28 H 1.09003 * 110.50104 * 278.44727 * 12 11 9 29 29 H 1.09012 * 110.33956 * 156.05763 * 12 11 9 30 30 H 1.07997 * 120.06872 * 359.94827 * 17 16 14 31 31 H 1.08003 * 119.92952 * 179.72404 * 18 17 16 32 32 H 1.08005 * 119.93036 * 179.72296 * 21 19 18 33 33 H 1.07997 * 120.07249 * 179.97438 * 22 21 19 34 34 H 1.08998 * 109.88704 * 120.70363 * 23 13 12 35 35 H 1.09005 * 109.87990 * 241.71425 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4509 -2.6227 1.1770 11 6 2.2284 -3.6974 -0.1282 12 6 1.3159 -4.7728 -0.7742 13 7 0.4641 -4.0246 -1.7164 14 6 -0.1421 -4.5381 -2.8052 15 8 -0.7421 -3.8066 -3.5685 16 6 -0.0774 -5.9904 -3.0710 17 6 -0.2247 -6.4717 -4.3731 18 6 -0.1682 -7.8283 -4.6143 19 6 0.0453 -8.7120 -3.5693 20 17 0.1219 -10.4179 -3.8816 21 6 0.1918 -8.2403 -2.2752 22 6 0.1318 -6.8864 -2.0209 23 6 0.3802 -2.6269 -1.2682 24 1 -0.4850 0.8401 0.0004 25 1 -0.2289 -1.9404 1.2639 26 1 3.0672 -3.4498 -0.7789 27 1 2.5791 -4.0216 0.8516 28 1 0.7044 -5.2606 -0.0150 29 1 1.9172 -5.5086 -1.3085 30 1 -0.3872 -5.7834 -5.1893 31 1 -0.2865 -8.2021 -5.6206 32 1 0.3536 -8.9345 -1.4637 33 1 0.2458 -6.5198 -1.0114 34 1 0.7592 -1.9646 -2.0465 35 1 -0.6544 -2.3731 -1.0372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:42 Heat of formation + Delta-G solvation = -58.161892 kcal Electronic energy + Delta-G solvation = -21279.681163 eV Core-core repulsion = 17882.590037 eV Total energy + Delta-G solvation = -3397.091125 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21619 -38.58820 -37.24051 -36.55247 -34.46791 -32.28192 -31.43737 -31.11929 -29.93487 -27.86561 -25.47964 -23.92623 -22.81724 -22.13363 -19.86286 -19.38082 -17.30696 -17.12639 -16.80194 -15.88632 -15.50620 -14.92320 -14.81648 -14.48975 -14.16891 -13.74330 -13.66014 -13.23153 -13.02819 -12.91378 -12.49889 -12.13590 -11.78607 -11.71488 -11.59008 -11.37485 -11.12822 -11.00845 -10.82842 -10.66150 -10.53298 -10.24368 -9.57304 -9.38628 -9.23361 -8.88364 -8.72455 -8.38420 -7.99526 -6.32863 -4.41608 0.65086 1.11136 1.86515 2.93321 3.18759 3.26698 3.29066 3.45934 3.75365 4.23937 4.57826 4.66722 4.70939 4.95552 5.08606 5.16755 5.27800 5.41912 5.60327 5.68157 5.78702 5.85271 5.90258 5.99637 6.08581 6.24320 6.41208 6.52345 6.67770 6.77792 6.87614 7.19626 7.30443 7.68396 7.95197 8.07850 8.55586 8.63115 9.23163 9.32753 10.75001 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.003471 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.295812 B = 8065.181754 C = 8429.839342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.071 3.929 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.119 4.119 12 C 0.095 3.905 13 N -0.603 5.603 14 C 0.559 3.441 15 O -0.544 6.544 16 C -0.114 4.114 17 C -0.054 4.054 18 C -0.120 4.120 19 C -0.020 4.020 20 Cl -0.073 7.073 21 C -0.118 4.118 22 C -0.086 4.086 23 C 0.104 3.896 24 H 0.270 0.730 25 H 0.383 0.617 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.151 0.849 34 H 0.069 0.931 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -15.915 -4.598 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.157 4.157 12 C -0.028 4.028 13 N -0.335 5.335 14 C 0.347 3.653 15 O -0.423 6.423 16 C -0.117 4.117 17 C -0.073 4.073 18 C -0.139 4.139 19 C -0.047 4.047 20 Cl -0.044 7.044 21 C -0.137 4.137 22 C -0.104 4.104 23 C -0.018 4.018 24 H 0.080 0.920 25 H 0.233 0.767 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.088 0.912 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.871 -16.072 -4.976 16.847 hybrid contribution -0.008 1.218 -0.176 1.231 sum 0.863 -14.853 -5.151 15.745 Atomic orbital electron populations 1.69691 1.06008 1.28002 1.49552 1.25074 0.95060 0.99812 0.93310 0.86394 0.79808 0.82364 0.78316 1.20401 1.20971 1.19665 1.21488 0.93697 0.90041 1.52461 0.91484 1.19499 0.86489 0.92148 0.81087 1.86107 1.51701 1.56681 1.44843 1.22833 0.97443 0.95001 1.00376 1.22681 0.92772 0.95521 0.91804 1.48721 1.47401 1.13190 1.24195 1.17850 0.79853 0.86826 0.80770 1.90768 1.44188 1.60749 1.46611 1.20233 1.02983 0.93990 0.94490 1.21235 0.95051 0.94641 0.96388 1.21001 1.01689 0.92366 0.98814 1.21159 1.03539 0.84812 0.95166 1.98371 1.96696 1.13232 1.96065 1.21022 1.01620 0.95857 0.95207 1.21938 0.95925 0.92127 1.00445 1.23080 1.01851 0.77930 0.98898 0.91955 0.76715 0.90283 0.90330 0.91235 0.91388 0.83941 0.84442 0.84399 0.83148 0.91218 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.33 10.98 55.43 0.61 -22.72 16 2 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 3 Si 0.90 20.13 29.54 -169.99 -5.02 15.11 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.71 8.12 -34.44 -0.28 -13.99 16 8 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 9 C 0.25 5.76 0.85 -89.94 -0.08 5.68 16 10 O -0.58 -14.03 13.08 -35.23 -0.46 -14.49 16 11 C -0.12 -2.23 6.24 -24.46 -0.15 -2.38 16 12 C 0.09 1.55 4.99 -2.42 -0.01 1.54 16 13 N -0.60 -11.92 3.32 -171.51 -0.57 -12.49 16 14 C 0.56 10.88 7.64 -12.35 -0.09 10.79 16 15 O -0.54 -12.48 16.94 5.31 0.09 -12.39 16 16 C -0.11 -1.72 5.67 -104.97 -0.60 -2.31 16 17 C -0.05 -0.71 9.59 -39.19 -0.38 -1.09 16 18 C -0.12 -1.31 9.81 -39.61 -0.39 -1.70 16 19 C -0.02 -0.22 6.33 -39.38 -0.25 -0.46 16 20 Cl -0.07 -0.70 28.95 -51.86 -1.50 -2.20 16 21 C -0.12 -1.27 9.81 -39.61 -0.39 -1.66 16 22 C -0.09 -1.08 8.07 -39.19 -0.32 -1.40 16 23 C 0.10 2.42 5.24 -3.07 -0.02 2.41 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.38 9.45 7.47 45.56 0.34 9.80 16 26 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 27 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.07 1.06 6.84 -51.93 -0.36 0.70 16 29 H 0.07 0.93 6.81 -51.92 -0.35 0.57 16 30 H 0.14 1.84 7.84 -52.49 -0.41 1.43 16 31 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 32 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.15 1.80 4.59 -52.49 -0.24 1.56 16 34 H 0.07 1.80 7.81 -51.93 -0.41 1.39 16 35 H 0.07 1.73 7.93 -51.93 -0.41 1.32 16 LS Contribution 309.43 15.07 4.66 4.66 Total: -1.00 -28.39 309.43 -8.30 -36.69 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.07 Total: 10.67 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -3.04 Total: -2.85 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.04 Total: -35.20 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.37 Total: -26.88 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.50 Total: -2.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.39 -8.30 -36.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.472 kcal (2) G-P(sol) polarization free energy of solvation -28.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds