Wall clock time and date at job start Tue Mar 31 2020 07:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00140 * 2 1 4 4 H 1.48504 * 109.47211 * 270.00446 * 3 2 1 5 5 H 1.48498 * 109.46751 * 30.00060 * 3 2 1 6 6 H 1.48493 * 109.47166 * 150.00455 * 3 2 1 7 7 C 1.37878 * 119.99712 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99896 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00200 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.78163 * 298.21353 * 9 7 2 11 11 C 1.55164 * 110.71911 * 174.97870 * 9 7 2 12 12 C 1.55127 * 101.48118 * 205.96867 * 11 9 7 13 13 N 1.47416 * 104.72617 * 37.29665 * 12 11 9 14 14 C 1.34784 * 125.64892 * 155.81133 * 13 12 11 15 15 O 1.21565 * 119.99638 * 185.45458 * 14 13 12 16 16 C 1.47782 * 120.00224 * 5.46352 * 14 13 12 17 17 C 1.39607 * 120.13049 * 204.54924 * 16 14 13 18 18 C 1.37901 * 119.86481 * 180.22874 * 17 16 14 19 19 C 1.38506 * 120.13244 * 359.46695 * 18 17 16 20 20 Cl 1.73596 * 119.86926 * 180.25497 * 19 18 17 21 21 C 1.38517 * 120.26230 * 0.55268 * 19 18 17 22 22 C 1.37891 * 120.13426 * 359.70493 * 21 19 18 23 23 C 1.47023 * 108.70272 * 335.55314 * 13 12 11 24 24 H 0.97000 * 119.99870 * 359.97438 * 1 2 3 25 25 H 0.96705 * 113.99398 * 61.78915 * 10 9 7 26 26 H 1.09004 * 111.00535 * 324.20742 * 11 9 7 27 27 H 1.08997 * 111.00256 * 88.02525 * 11 9 7 28 28 H 1.09003 * 110.50104 * 278.44727 * 12 11 9 29 29 H 1.09012 * 110.33956 * 156.05763 * 12 11 9 30 30 H 1.07997 * 120.06872 * 359.94827 * 17 16 14 31 31 H 1.08003 * 119.92952 * 179.72404 * 18 17 16 32 32 H 1.08005 * 119.93036 * 179.72296 * 21 19 18 33 33 H 1.07997 * 120.07249 * 179.97438 * 22 21 19 34 34 H 1.08998 * 109.88704 * 120.70363 * 23 13 12 35 35 H 1.09005 * 109.87990 * 241.71425 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.4509 -2.6227 1.1770 11 6 2.2284 -3.6974 -0.1282 12 6 1.3159 -4.7728 -0.7742 13 7 0.4641 -4.0246 -1.7164 14 6 -0.1421 -4.5381 -2.8052 15 8 -0.7421 -3.8066 -3.5685 16 6 -0.0774 -5.9904 -3.0710 17 6 -0.2247 -6.4717 -4.3731 18 6 -0.1682 -7.8283 -4.6143 19 6 0.0453 -8.7120 -3.5693 20 17 0.1219 -10.4179 -3.8816 21 6 0.1918 -8.2403 -2.2752 22 6 0.1318 -6.8864 -2.0209 23 6 0.3802 -2.6269 -1.2682 24 1 -0.4850 0.8401 0.0004 25 1 -0.2289 -1.9404 1.2639 26 1 3.0672 -3.4498 -0.7789 27 1 2.5791 -4.0216 0.8516 28 1 0.7044 -5.2606 -0.0150 29 1 1.9172 -5.5086 -1.3085 30 1 -0.3872 -5.7834 -5.1893 31 1 -0.2865 -8.2021 -5.6206 32 1 0.3536 -8.9345 -1.4637 33 1 0.2458 -6.5198 -1.0114 34 1 0.7592 -1.9646 -2.0465 35 1 -0.6544 -2.3731 -1.0372 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:41 Heat of formation + Delta-G solvation = -76.649457 kcal Electronic energy + Delta-G solvation = -21280.482844 eV Core-core repulsion = 17882.590037 eV Total energy + Delta-G solvation = -3397.892806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.56024 -39.83921 -38.82306 -37.43576 -36.19542 -34.24561 -32.61470 -32.13186 -31.40800 -29.54670 -27.24249 -25.32237 -23.81814 -23.43006 -21.51431 -20.82643 -19.13529 -18.45536 -17.89645 -17.45250 -16.90378 -16.64627 -16.23703 -15.89352 -15.39556 -14.94950 -14.86637 -14.74401 -14.51467 -14.38745 -13.90161 -13.57505 -13.43316 -13.11611 -12.87135 -12.68453 -12.52773 -12.40418 -12.32621 -12.27321 -12.09769 -11.79936 -11.16466 -11.12776 -10.66513 -10.30025 -10.15112 -9.90323 -9.59691 -8.27872 -6.43457 -0.38144 0.20857 1.02329 1.40335 1.42846 1.52196 1.64351 1.97446 2.37255 2.62270 2.99182 3.41195 3.66524 3.76855 3.82723 4.06204 4.15715 4.18219 4.25565 4.33602 4.51789 4.56742 4.66869 4.88500 4.99871 4.99989 5.07767 5.10794 5.17009 5.27533 5.35412 5.49696 5.60544 5.72851 6.04697 6.53769 6.64831 7.03149 7.26069 7.33728 8.78138 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.036294 B = 0.003471 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.295812 B = 8065.181754 C = 8429.839342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.026 3.974 3 Si 0.962 3.038 4 H -0.280 1.280 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.558 4.558 8 H 0.067 0.933 9 C 0.234 3.766 10 O -0.584 6.584 11 C -0.114 4.114 12 C 0.100 3.900 13 N -0.608 5.608 14 C 0.554 3.446 15 O -0.593 6.593 16 C -0.136 4.136 17 C -0.061 4.061 18 C -0.112 4.112 19 C -0.016 4.016 20 Cl -0.055 7.055 21 C -0.109 4.109 22 C -0.082 4.082 23 C 0.121 3.879 24 H 0.270 0.730 25 H 0.375 0.625 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.032 0.968 35 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -18.735 -4.382 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.175 4.175 3 Si 0.787 3.213 4 H -0.206 1.206 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.596 4.596 8 H 0.085 0.915 9 C 0.194 3.806 10 O -0.392 6.392 11 C -0.152 4.152 12 C -0.021 4.021 13 N -0.339 5.339 14 C 0.345 3.655 15 O -0.476 6.476 16 C -0.139 4.139 17 C -0.080 4.080 18 C -0.131 4.131 19 C -0.043 4.043 20 Cl -0.026 7.026 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.002 4.002 24 H 0.079 0.921 25 H 0.224 0.776 26 H 0.101 0.899 27 H 0.114 0.886 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.153 0.847 31 H 0.180 0.820 32 H 0.185 0.815 33 H 0.175 0.825 34 H 0.051 0.949 35 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 2.091 -18.935 -4.744 19.632 hybrid contribution -0.399 1.983 -0.292 2.044 sum 1.691 -16.951 -5.036 17.764 Atomic orbital electron populations 1.69799 1.07072 1.28458 1.50111 1.25802 0.95797 1.02782 0.93120 0.85493 0.78904 0.78849 0.78033 1.20606 1.20737 1.18859 1.21850 0.93974 0.91421 1.52394 0.91463 1.19686 0.87021 0.93543 0.80364 1.86094 1.51565 1.56285 1.45275 1.22838 0.96921 0.93696 1.01731 1.22886 0.92414 0.95015 0.91769 1.48750 1.48145 1.11967 1.25061 1.18633 0.78490 0.88692 0.79669 1.90725 1.46165 1.62515 1.48173 1.19926 1.06596 0.91159 0.96261 1.21248 0.95430 0.95747 0.95551 1.21188 1.00464 0.91185 1.00215 1.21332 1.02081 0.85707 0.95216 1.98389 1.96479 1.11714 1.96006 1.21287 1.00088 0.95302 0.96045 1.21953 0.95605 0.92555 0.99881 1.22560 0.99596 0.79863 0.98151 0.92106 0.77569 0.89927 0.88617 0.89387 0.87717 0.84651 0.82039 0.81482 0.82453 0.94923 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.48 10.98 21.45 0.24 -49.25 16 2 C 0.03 1.36 5.28 84.66 0.45 1.80 16 3 Si 0.96 41.83 29.54 68.60 2.03 43.86 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.56 -28.87 8.12 25.60 0.21 -28.66 16 8 H 0.07 3.38 7.78 -2.91 -0.02 3.36 16 9 C 0.23 11.02 0.85 -10.35 -0.01 11.01 16 10 O -0.58 -28.41 13.08 -148.98 -1.95 -30.36 16 11 C -0.11 -4.14 6.24 32.07 0.20 -3.94 16 12 C 0.10 3.08 4.99 86.93 0.43 3.52 16 13 N -0.61 -24.32 3.32 -814.82 -2.71 -27.03 16 14 C 0.55 22.07 7.64 86.77 0.66 22.73 16 15 O -0.59 -28.69 16.94 -3.92 -0.07 -28.75 16 16 C -0.14 -3.98 5.67 -20.09 -0.11 -4.09 16 17 C -0.06 -1.53 9.59 22.52 0.22 -1.31 16 18 C -0.11 -2.13 9.81 22.25 0.22 -1.91 16 19 C -0.02 -0.29 6.33 22.40 0.14 -0.15 16 20 Cl -0.05 -0.85 28.95 -2.72 -0.08 -0.92 16 21 C -0.11 -1.90 9.81 22.25 0.22 -1.68 16 22 C -0.08 -1.82 8.07 22.52 0.18 -1.64 16 23 C 0.12 5.95 5.24 86.73 0.45 6.41 16 24 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 25 H 0.38 19.21 7.47 -74.05 -0.55 18.66 16 26 H 0.08 2.91 8.04 -2.39 -0.02 2.89 16 27 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.09 2.42 6.84 -2.39 -0.02 2.40 16 29 H 0.10 2.49 6.81 -2.38 -0.02 2.48 16 30 H 0.14 3.54 7.84 -2.91 -0.02 3.51 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.16 3.24 4.59 -2.91 -0.01 3.23 16 34 H 0.03 1.79 7.81 -2.39 -0.02 1.78 16 35 H 0.03 1.88 7.93 -2.38 -0.02 1.86 16 Total: -1.00 -64.21 309.43 1.30 -62.90 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.58 Total: 27.47 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: 3.26 Total: 2.08 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -2.47 Total: -76.27 kcal Atomic # 8 Polarization: -57.10 SS G_CDS: -2.01 Total: -59.11 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.92 kcal Total: -64.21 1.30 -62.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.745 kcal (2) G-P(sol) polarization free energy of solvation -64.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds