Wall clock time and date at job start Tue Mar 31 2020 07:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99608 * 2 1 4 4 H 1.48502 * 109.47258 * 270.00025 * 3 2 1 5 5 H 1.48502 * 109.47322 * 30.00094 * 3 2 1 6 6 H 1.48499 * 109.46928 * 149.99961 * 3 2 1 7 7 C 1.37870 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99944 * 0.02562 * 7 2 1 10 10 O 1.42905 * 110.64668 * 59.29710 * 9 7 2 11 11 C 1.55154 * 110.72218 * 182.43907 * 9 7 2 12 12 C 1.55393 * 101.37004 * 153.94422 * 11 9 7 13 13 N 1.47423 * 104.87287 * 323.02003 * 12 11 9 14 14 C 1.34771 * 125.64933 * 204.16740 * 13 12 11 15 15 O 1.21558 * 119.99984 * 354.98795 * 14 13 12 16 16 C 1.47776 * 120.00123 * 174.98898 * 14 13 12 17 17 C 1.39627 * 120.15227 * 7.90358 * 16 14 13 18 18 C 1.37893 * 119.86221 * 179.72347 * 17 16 14 19 19 C 1.38432 * 120.18197 * 0.55194 * 18 17 16 20 20 C 1.38262 * 120.31481 * 359.72419 * 19 18 17 21 21 C 1.38153 * 120.13354 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 120.09389 * 179.97438 * 21 20 19 23 23 C 1.47027 * 108.70174 * 24.12813 * 13 12 11 24 24 H 0.96999 * 120.00280 * 359.97438 * 1 2 3 25 25 H 0.96707 * 113.99597 * 300.70486 * 10 9 7 26 26 H 1.09001 * 111.00414 * 272.11615 * 11 9 7 27 27 H 1.09001 * 111.00435 * 35.96584 * 11 9 7 28 28 H 1.08998 * 110.34476 * 204.16887 * 12 11 9 29 29 H 1.08998 * 110.43912 * 81.91691 * 12 11 9 30 30 H 1.07999 * 120.06764 * 359.97438 * 17 16 14 31 31 H 1.07998 * 119.91060 * 180.27663 * 18 17 16 32 32 H 1.07997 * 119.84052 * 179.74650 * 19 18 17 33 33 H 1.08000 * 119.93130 * 179.97438 * 20 19 18 34 34 H 1.09000 * 109.88209 * 239.52175 * 23 13 12 35 35 H 1.08999 * 109.88348 * 118.36385 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4990 -0.0017 10 8 0.4084 -2.5933 -1.1519 11 6 2.2323 -3.6994 0.0596 12 6 1.3422 -4.7893 0.7187 13 7 0.5227 -4.0628 1.7056 14 6 -0.0438 -4.6001 2.8041 15 8 0.0262 -5.7977 3.0001 16 6 -0.7502 -3.7333 3.7703 17 6 -0.9765 -2.3884 3.4710 18 6 -1.6413 -1.5864 4.3745 19 6 -2.0742 -2.1083 5.5814 20 6 -1.8490 -3.4376 5.8879 21 6 -1.1898 -4.2544 4.9896 22 17 -0.9069 -5.9231 5.3757 23 6 0.4267 -2.6547 1.2935 24 1 -0.4850 0.8400 0.0004 25 1 -0.2486 -1.8867 -1.2170 26 1 2.5464 -3.9988 -0.9403 27 1 3.0944 -3.4678 0.6852 28 1 1.9622 -5.5353 1.2160 29 1 0.7051 -5.2632 -0.0280 30 1 -0.6353 -1.9782 2.5321 31 1 -1.8208 -0.5472 4.1419 32 1 -2.5907 -1.4742 6.2867 33 1 -2.1891 -3.8382 6.8314 34 1 0.8356 -2.0117 2.0728 35 1 -0.6146 -2.3942 1.1037 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843846.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:44 Heat of formation + Delta-G solvation = -50.909914 kcal Electronic energy + Delta-G solvation = -21943.202302 eV Core-core repulsion = 18546.425646 eV Total energy + Delta-G solvation = -3396.776656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.58121 -39.71830 -38.76738 -37.36463 -36.02679 -34.18957 -33.14289 -31.72092 -31.24122 -29.58698 -27.23004 -25.45305 -23.70444 -23.31866 -21.53289 -20.88950 -19.13780 -18.25214 -17.94150 -17.16359 -16.90302 -16.62971 -16.29077 -15.83205 -15.40851 -15.02228 -14.84369 -14.80586 -14.33966 -14.13479 -13.88671 -13.45788 -13.39669 -12.93479 -12.74336 -12.57007 -12.47182 -12.33567 -12.27717 -12.22691 -12.10276 -11.86014 -11.08127 -10.76734 -10.58882 -10.11895 -10.09987 -9.85755 -9.52695 -8.23601 -6.37740 -0.29034 0.18151 1.14686 1.45468 1.50426 1.57468 1.79187 2.00687 2.42125 2.70827 3.02017 3.42052 3.74103 3.88107 4.00543 4.03909 4.11852 4.29168 4.29380 4.36372 4.49600 4.57527 4.71375 4.83237 4.90560 5.05939 5.09053 5.22017 5.26524 5.28806 5.40585 5.47988 5.75558 5.77496 6.06232 6.52538 6.67178 7.07907 7.32830 7.41835 8.83062 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018142 B = 0.005731 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.995024 B = 4884.191128 C = 6027.564849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.039 3.961 3 Si 0.956 3.044 4 H -0.281 1.281 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.557 4.557 8 H 0.062 0.938 9 C 0.231 3.769 10 O -0.591 6.591 11 C -0.112 4.112 12 C 0.113 3.887 13 N -0.611 5.611 14 C 0.554 3.446 15 O -0.560 6.560 16 C -0.152 4.152 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.069 4.069 20 C -0.123 4.123 21 C -0.004 4.004 22 Cl -0.053 7.053 23 C 0.105 3.895 24 H 0.275 0.725 25 H 0.379 0.621 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.165 0.835 31 H 0.153 0.847 32 H 0.178 0.822 33 H 0.166 0.834 34 H 0.070 0.930 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -0.694 10.280 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.162 4.162 3 Si 0.782 3.218 4 H -0.207 1.207 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.080 0.920 9 C 0.191 3.809 10 O -0.400 6.400 11 C -0.150 4.150 12 C -0.009 4.009 13 N -0.343 5.343 14 C 0.344 3.656 15 O -0.441 6.441 16 C -0.155 4.155 17 C -0.139 4.139 18 C -0.142 4.142 19 C -0.087 4.087 20 C -0.141 4.141 21 C -0.032 4.032 22 Cl -0.024 7.024 23 C -0.017 4.017 24 H 0.084 0.916 25 H 0.230 0.770 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.181 0.819 31 H 0.171 0.829 32 H 0.195 0.805 33 H 0.184 0.816 34 H 0.088 0.912 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.863 -1.933 10.357 11.222 hybrid contribution 0.126 1.136 -0.243 1.169 sum -3.737 -0.796 10.115 10.812 Atomic orbital electron populations 1.69675 1.06491 1.28725 1.49861 1.25591 0.95828 1.01875 0.92936 0.85585 0.78805 0.79364 0.78034 1.20691 1.20296 1.19838 1.21740 0.93814 0.91131 1.52870 0.92021 1.19757 0.86754 0.93014 0.81370 1.86136 1.51764 1.54700 1.47372 1.22840 0.97141 0.93920 1.01078 1.22295 0.93033 0.95160 0.90428 1.48687 1.50427 1.12095 1.23083 1.18276 0.79125 0.87353 0.80827 1.90760 1.61624 1.15381 1.76363 1.19765 1.05105 0.95289 0.95366 1.23129 0.96036 0.91863 1.02866 1.21609 0.97387 1.01306 0.93942 1.21807 0.96162 0.94251 0.96506 1.21398 0.99043 0.93867 0.99802 1.21265 1.00245 0.87055 0.94656 1.98378 1.94679 1.15905 1.93398 1.23179 1.00293 0.79192 0.99053 0.91576 0.77042 0.89555 0.89805 0.90483 0.92027 0.81854 0.82898 0.80474 0.81633 0.91239 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -42.57 10.96 21.44 0.24 -42.34 16 2 C 0.04 1.85 5.27 84.65 0.45 2.30 16 3 Si 0.96 38.25 29.54 68.60 2.03 40.27 16 4 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 7 C -0.56 -27.00 8.11 25.60 0.21 -26.79 16 8 H 0.06 2.99 7.77 -2.91 -0.02 2.97 16 9 C 0.23 10.51 0.85 -10.35 -0.01 10.51 16 10 O -0.59 -28.50 13.07 -148.98 -1.95 -30.45 16 11 C -0.11 -4.43 6.26 32.16 0.20 -4.23 16 12 C 0.11 4.39 6.89 87.03 0.60 4.99 16 13 N -0.61 -25.33 3.33 -825.22 -2.75 -28.07 16 14 C 0.55 23.09 7.78 86.77 0.68 23.76 16 15 O -0.56 -25.05 14.33 -3.90 -0.06 -25.10 16 16 C -0.15 -5.50 5.87 -20.07 -0.12 -5.62 16 17 C -0.12 -4.04 8.59 22.52 0.19 -3.85 16 18 C -0.12 -3.13 10.03 22.23 0.22 -2.91 16 19 C -0.07 -1.36 10.04 22.32 0.22 -1.14 16 20 C -0.12 -2.79 9.82 22.26 0.22 -2.57 16 21 C 0.00 -0.14 6.35 22.60 0.14 0.01 16 22 Cl -0.05 -1.71 26.06 -2.72 -0.07 -1.78 16 23 C 0.10 4.48 3.38 86.73 0.29 4.78 16 24 H 0.27 12.23 8.31 -92.71 -0.77 11.46 16 25 H 0.38 18.51 7.23 -74.05 -0.54 17.97 16 26 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.08 3.17 8.04 -2.39 -0.02 3.15 16 28 H 0.08 2.80 8.09 -2.39 -0.02 2.79 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.16 6.15 2.78 -7.12 -0.02 6.13 16 31 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 33 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 34 H 0.07 3.06 6.36 -2.39 -0.02 3.05 16 35 H 0.07 2.91 6.64 -2.39 -0.02 2.90 16 Total: -1.00 -56.75 303.53 1.33 -55.41 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.59 Total: 32.83 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 3.30 Total: -0.77 kcal Atomic # 7 Polarization: -67.90 SS G_CDS: -2.51 Total: -70.41 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.00 Total: -55.55 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.27 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.07 Total: -1.78 kcal Total: -56.75 1.33 -55.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843846.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.501 kcal (2) G-P(sol) polarization free energy of solvation -56.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds