Wall clock time and date at job start Tue Mar 31 2020 07:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47066 * 2 1 4 4 H 1.09004 * 109.47289 * 185.17630 * 3 2 1 5 5 C 1.50702 * 109.47507 * 305.17758 * 3 2 1 6 6 H 1.08002 * 119.99869 * 119.98988 * 5 3 2 7 7 C 1.37870 * 119.99816 * 300.00257 * 5 3 2 8 8 N 1.31516 * 119.99918 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00126 * 359.97438 * 7 5 3 10 10 H 1.48506 * 109.47200 * 90.00221 * 9 7 5 11 11 H 1.48501 * 109.47151 * 209.99907 * 9 7 5 12 12 H 1.48498 * 109.47363 * 330.00528 * 9 7 5 13 13 N 1.46908 * 109.47009 * 65.17692 * 3 2 1 14 14 C 1.46903 * 110.99539 * 85.90438 * 13 3 2 15 15 C 1.50704 * 109.46626 * 174.83946 * 14 13 3 16 16 N 1.29409 * 125.69887 * 90.02034 * 15 14 13 17 17 N 1.26398 * 116.47678 * 179.97438 * 16 15 14 18 18 C 1.29419 * 116.47658 * 0.02562 * 17 16 15 19 19 C 1.50698 * 125.69725 * 179.97438 * 18 17 16 20 20 F 1.39890 * 109.47206 * 5.02234 * 19 18 17 21 21 F 1.39900 * 109.47096 * 125.02474 * 19 18 17 22 22 F 1.39901 * 109.46952 * 245.01843 * 19 18 17 23 23 S 1.71220 * 108.60503 * 359.76635 * 18 17 16 24 24 H 1.09000 * 109.47119 * 54.85768 * 1 2 3 25 25 H 1.09000 * 109.47161 * 294.85037 * 1 2 3 26 26 H 1.09006 * 109.46795 * 174.85081 * 1 2 3 27 27 H 1.09003 * 109.47373 * 120.00066 * 2 1 3 28 28 H 1.09001 * 109.47256 * 240.00046 * 2 1 3 29 29 H 0.96999 * 119.99907 * 180.02562 * 8 7 5 30 30 H 1.00898 * 110.99883 * 321.94864 * 13 3 2 31 31 H 1.08994 * 109.46864 * 294.83111 * 14 13 3 32 32 H 1.08994 * 109.47486 * 54.83798 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1260 1.4439 -0.0927 5 6 1.4357 2.1890 -1.1613 6 1 0.8265 3.0629 -0.9833 7 6 1.6604 1.7563 -2.4509 8 7 1.1327 2.4075 -3.4644 9 14 2.7144 0.2451 -2.7587 10 1 1.8539 -0.9652 -2.7672 11 1 3.3968 0.3765 -4.0712 12 1 3.7303 0.1225 -1.6826 13 7 1.6549 2.0980 1.2571 14 6 2.6439 1.8364 2.3114 15 6 2.2838 2.6246 3.5444 16 7 1.5230 2.2144 4.5075 17 7 1.3372 3.0219 5.4619 18 6 1.9280 4.1697 5.3700 19 6 1.8498 5.2826 6.3830 20 9 1.1302 4.8464 7.5004 21 9 3.1421 5.6487 6.7743 22 9 1.2046 6.3861 5.8144 23 16 2.8182 4.2102 3.9079 24 1 -0.3633 0.5915 -0.8403 25 1 -0.3633 0.4319 0.9325 26 1 -0.3633 -1.0236 -0.0922 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.2905 2.1028 -4.3717 30 1 0.7324 1.8102 1.5472 31 1 2.6490 0.7727 2.5489 32 1 3.6327 2.1361 1.9645 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530858.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:07 Heat of formation + Delta-G solvation = -73.928367 kcal Electronic energy + Delta-G solvation = -21194.713014 eV Core-core repulsion = 17289.417920 eV Total energy + Delta-G solvation = -3905.295094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.56119 -48.10799 -48.02197 -41.67896 -37.26726 -33.85238 -32.16693 -31.23530 -28.88446 -27.01238 -25.61296 -24.03225 -23.33253 -20.99265 -20.08666 -19.77208 -18.98558 -18.39772 -18.07529 -16.67905 -16.07338 -15.48015 -15.20054 -14.87886 -14.82503 -14.46705 -14.31029 -14.17745 -14.16444 -13.85283 -13.61556 -13.31059 -12.98042 -12.79364 -12.52721 -12.32108 -11.24199 -10.95662 -10.89778 -10.74216 -10.67701 -10.54171 -10.40285 -10.06188 -9.96592 -9.49258 -9.31730 -8.65211 -7.81436 -6.15040 -4.12867 -0.16707 0.35833 0.93972 1.99789 2.08888 3.05134 3.18326 3.25289 3.30847 3.68342 3.86388 3.94254 4.30246 4.55162 4.80371 4.93598 5.14666 5.43625 5.55260 5.80533 5.87318 6.04776 6.42458 6.57156 6.68251 6.80999 7.18968 7.46451 7.64473 7.94323 8.07912 8.52755 8.95295 9.45902 10.97895 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.032501 B = 0.003550 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.297076 B = 7886.284672 C = 8124.054700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.161 4.161 3 C 0.188 3.812 4 H 0.038 0.962 5 C -0.496 4.496 6 H 0.083 0.917 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.880 3.120 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.270 1.270 13 N -0.665 5.665 14 C 0.124 3.876 15 C 0.026 3.974 16 N -0.258 5.258 17 N -0.192 5.192 18 C -0.172 4.172 19 C 0.566 3.434 20 F -0.153 7.153 21 F -0.163 7.163 22 F -0.160 7.160 23 S 0.303 5.697 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.032 0.968 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.265 0.735 30 H 0.343 0.657 31 H 0.067 0.933 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.022 3.340 16.782 17.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.200 4.200 3 C 0.080 3.920 4 H 0.056 0.944 5 C -0.534 4.534 6 H 0.101 0.899 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.710 3.290 10 H -0.205 1.205 11 H -0.223 1.223 12 H -0.195 1.195 13 N -0.298 5.298 14 C -0.010 4.010 15 C -0.250 4.250 16 N -0.099 5.099 17 N -0.034 5.034 18 C -0.451 4.451 19 C 0.507 3.493 20 F -0.134 7.134 21 F -0.144 7.144 22 F -0.141 7.141 23 S 0.546 5.454 24 H 0.101 0.899 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.162 0.838 31 H 0.085 0.915 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.098 3.774 16.576 17.748 hybrid contribution 0.174 -1.798 0.124 1.811 sum 5.273 1.975 16.700 17.624 Atomic orbital electron populations 1.21660 0.95557 0.99913 1.02548 1.22517 0.97555 1.00589 0.99291 1.19774 0.96363 0.88557 0.87333 0.94403 1.20793 1.31769 1.12992 0.87860 0.89875 1.24868 0.95438 0.96558 0.96074 1.69867 1.44544 1.40073 0.98928 0.86983 0.81084 0.83851 0.77039 1.20501 1.22308 1.19502 1.60802 1.04015 1.62982 1.02044 1.20654 0.98711 0.96202 0.85398 1.29900 0.96681 0.97128 1.01253 1.71643 1.15162 1.24840 0.98238 1.71468 1.15527 0.97595 1.18840 1.29020 1.10546 1.01290 1.04223 1.16550 0.74530 0.79315 0.78868 1.93269 1.77846 1.89330 1.52962 1.93269 1.37711 1.92090 1.91380 1.93290 1.81596 1.54564 1.84681 1.83899 1.40264 1.12614 1.08575 0.89924 0.94026 0.94846 0.94626 0.92945 0.92528 0.83774 0.91481 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.40 37.16 0.35 -2.29 16 2 C -0.16 -3.14 5.22 -26.73 -0.14 -3.28 16 3 C 0.19 3.93 1.93 -68.86 -0.13 3.80 16 4 H 0.04 0.80 6.76 -51.93 -0.35 0.45 16 5 C -0.50 -12.69 7.83 -34.44 -0.27 -12.96 16 6 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 1.95 5.42 -17.82 -0.10 1.85 16 8 N -0.90 -25.92 13.96 55.43 0.77 -25.15 16 9 Si 0.88 20.43 24.32 -169.99 -4.13 16.29 16 10 H -0.28 -6.37 6.92 56.52 0.39 -5.98 16 11 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -5.90 6.53 56.52 0.37 -5.53 16 13 N -0.67 -11.94 6.19 -109.21 -0.68 -12.62 16 14 C 0.12 1.76 6.11 -4.97 -0.03 1.73 16 15 C 0.03 0.36 7.09 -13.30 -0.09 0.27 16 16 N -0.26 -3.98 11.66 32.58 0.38 -3.60 16 17 N -0.19 -2.90 11.41 32.58 0.37 -2.53 16 18 C -0.17 -2.20 6.83 -13.30 -0.09 -2.29 16 19 C 0.57 6.34 3.55 36.00 0.13 6.47 16 20 F -0.15 -1.82 17.13 2.25 0.04 -1.78 16 21 F -0.16 -1.65 17.30 2.25 0.04 -1.61 16 22 F -0.16 -1.77 17.30 2.25 0.04 -1.73 16 23 S 0.30 3.47 23.04 -107.50 -2.48 0.99 16 24 H 0.08 1.80 6.85 -51.93 -0.36 1.44 16 25 H 0.04 0.71 6.63 -51.93 -0.34 0.37 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.61 7.50 -51.93 -0.39 0.22 16 28 H 0.05 1.10 3.42 -51.93 -0.18 0.92 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.34 6.14 6.69 -39.29 -0.26 5.88 16 31 H 0.07 0.91 7.53 -51.93 -0.39 0.52 16 32 H 0.10 1.28 7.93 -51.93 -0.41 0.87 16 LS Contribution 294.07 15.07 4.43 4.43 Total: -1.00 -28.12 294.07 -4.30 -32.42 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -2.71 Total: 1.58 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -0.38 Total: -6.70 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.85 Total: -43.90 kcal Atomic # 9 Polarization: -5.23 SS G_CDS: 0.12 Total: -5.12 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.13 Total: 16.29 kcal Atomic # 16 Polarization: 3.47 SS G_CDS: -2.48 Total: 0.99 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.12 -4.30 -32.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530858.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.506 kcal (2) G-P(sol) polarization free energy of solvation -28.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds