Wall clock time and date at job start Tue Mar 31 2020 07:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46789 * 2 1 4 4 H 1.09004 * 109.47088 * 174.08816 * 3 2 1 5 5 C 1.50706 * 109.46936 * 54.09407 * 3 2 1 6 6 H 1.07999 * 119.99618 * 240.00014 * 5 3 2 7 7 C 1.37874 * 119.99991 * 59.99479 * 5 3 2 8 8 N 1.31510 * 120.00397 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47145 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47609 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47269 * 300.00244 * 9 7 5 13 13 N 1.46894 * 109.47279 * 294.09067 * 3 2 1 14 14 C 1.46896 * 111.00270 * 275.76020 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.22474 * 14 13 3 16 16 N 1.29413 * 125.70147 * 90.02328 * 15 14 13 17 17 N 1.26394 * 116.47611 * 179.97438 * 16 15 14 18 18 C 1.29410 * 116.47807 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.69666 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.47091 * 5.02036 * 19 18 17 21 21 F 1.39904 * 109.47018 * 125.02659 * 19 18 17 22 22 F 1.39905 * 109.46749 * 245.02312 * 19 18 17 23 23 S 1.71220 * 125.69101 * 269.71322 * 15 14 13 24 24 H 1.09001 * 109.46781 * 178.55338 * 1 2 3 25 25 H 1.09005 * 109.47185 * 58.55739 * 1 2 3 26 26 H 1.08994 * 109.47502 * 298.55639 * 1 2 3 27 27 H 1.08994 * 109.47284 * 120.00015 * 2 1 3 28 28 H 1.08997 * 109.47022 * 240.00750 * 2 1 3 29 29 H 0.96995 * 120.00287 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00360 * 39.71501 * 13 3 2 31 31 H 1.09006 * 109.46730 * 296.21974 * 14 13 3 32 32 H 1.08996 * 109.47238 * 56.21437 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1248 1.4445 0.1059 5 6 1.4217 2.1939 1.1509 6 1 0.8147 3.0670 0.9619 7 6 1.6309 1.7666 2.4449 8 7 2.3703 0.7036 2.6751 9 14 0.8640 2.6974 3.8714 10 1 -0.6140 2.6943 3.7270 11 1 1.2383 2.0407 5.1495 12 1 1.3583 4.0978 3.8716 13 7 1.6701 2.0927 -1.2643 14 6 2.6511 1.7945 -2.3163 15 6 2.1916 2.3994 -3.6178 16 7 2.4775 3.5886 -4.0404 17 7 1.9980 3.9184 -5.1624 18 6 1.2747 3.0300 -5.7643 19 6 0.6047 3.2017 -7.1033 20 9 0.9763 4.4319 -7.6562 21 9 0.9999 2.1675 -7.9586 22 9 -0.7840 3.1652 -6.9379 23 16 1.2101 1.6251 -4.7877 24 1 -0.3633 -1.0274 -0.0259 25 1 -0.3634 0.5361 -0.8768 26 1 -0.3634 0.4912 0.9026 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 2.5171 0.4028 3.5854 30 1 0.7405 1.8246 -1.5504 31 1 3.6181 2.2157 -2.0412 32 1 2.7445 0.7145 -2.4304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:09 Heat of formation + Delta-G solvation = -81.021426 kcal Electronic energy + Delta-G solvation = -21173.200218 eV Core-core repulsion = 17267.597546 eV Total energy + Delta-G solvation = -3905.602672 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.066 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.57720 -48.12697 -48.03484 -41.66163 -37.00101 -33.77942 -32.12099 -30.82337 -28.78112 -26.71425 -25.42092 -23.97774 -23.38083 -21.04232 -20.06260 -19.51751 -19.00391 -18.40603 -18.17385 -16.34341 -16.03186 -15.08563 -14.99279 -14.84619 -14.79080 -14.48528 -14.46585 -14.19545 -14.17889 -13.76662 -13.41882 -13.16342 -12.94286 -12.62468 -12.19262 -11.91344 -11.06160 -10.92303 -10.81371 -10.67857 -10.61624 -10.42608 -10.15739 -10.14859 -9.87453 -9.72935 -9.17746 -8.45243 -7.59070 -6.08749 -4.10819 -0.16991 0.31737 0.87115 1.98149 2.13926 3.03586 3.29565 3.34205 3.37919 3.67323 3.84629 4.00093 4.36802 4.57964 4.88583 5.12713 5.23799 5.52872 5.79862 6.16853 6.19578 6.38928 6.69068 6.98662 7.05502 7.34577 7.48740 7.72948 8.05147 8.12578 8.19654 8.38376 8.93662 9.53241 10.98433 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.031829 B = 0.003429 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.480586 B = 8162.588106 C = 8327.707574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.148 4.148 3 C 0.217 3.783 4 H 0.040 0.960 5 C -0.493 4.493 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.672 5.672 14 C 0.127 3.873 15 C 0.035 3.965 16 N -0.240 5.240 17 N -0.190 5.190 18 C -0.163 4.163 19 C 0.566 3.434 20 F -0.152 7.152 21 F -0.163 7.163 22 F -0.161 7.161 23 S 0.257 5.743 24 H 0.025 0.975 25 H 0.027 0.973 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.011 0.989 29 H 0.261 0.739 30 H 0.329 0.671 31 H 0.110 0.890 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.998 -1.837 -17.311 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.188 4.188 3 C 0.110 3.890 4 H 0.058 0.942 5 C -0.532 4.532 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.305 5.305 14 C -0.006 4.006 15 C -0.242 4.242 16 N -0.080 5.080 17 N -0.031 5.031 18 C -0.442 4.442 19 C 0.507 3.493 20 F -0.133 7.133 21 F -0.144 7.144 22 F -0.142 7.142 23 S 0.501 5.499 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.030 0.970 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.128 0.872 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.492 -1.042 -16.996 17.209 hybrid contribution -0.682 -0.317 0.410 0.856 sum -3.174 -1.358 -16.586 16.941 Atomic orbital electron populations 1.21583 0.97462 0.98266 1.01382 1.22157 0.95252 1.00782 1.00567 1.19308 0.96707 0.88772 0.84212 0.94171 1.20940 1.31013 1.11762 0.89467 0.91888 1.24879 0.95398 0.95123 0.98695 1.69847 1.38878 1.23998 1.20713 0.86583 0.79601 0.80085 0.81300 1.20324 1.21428 1.20219 1.61044 1.03199 1.63602 1.02643 1.20726 0.99397 0.96847 0.83613 1.30079 0.97395 0.93679 1.03006 1.71638 1.19555 1.12597 1.04216 1.71517 1.04362 1.25937 1.01327 1.28963 1.10986 0.99836 1.04429 1.16557 0.76262 0.74937 0.81514 1.93276 1.91137 1.42756 1.86120 1.93271 1.90649 1.58678 1.71828 1.93285 1.29330 1.96148 1.95454 1.83810 1.43877 1.13378 1.08838 0.95575 0.95367 0.91254 0.88437 0.96988 0.92869 0.85282 0.87204 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 9.39 37.16 0.35 -2.15 16 2 C -0.15 -3.09 5.50 -26.73 -0.15 -3.23 16 3 C 0.22 4.86 2.33 -68.86 -0.16 4.70 16 4 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 5 C -0.49 -12.55 7.35 -34.44 -0.25 -12.80 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 8 N -0.90 -23.84 11.39 55.43 0.63 -23.21 16 9 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.67 -12.79 6.24 -109.22 -0.68 -13.47 16 14 C 0.13 1.98 6.08 -4.98 -0.03 1.95 16 15 C 0.03 0.51 7.00 -13.30 -0.09 0.41 16 16 N -0.24 -4.00 11.66 32.58 0.38 -3.62 16 17 N -0.19 -2.98 11.41 32.58 0.37 -2.61 16 18 C -0.16 -2.12 6.83 -13.30 -0.09 -2.21 16 19 C 0.57 6.36 3.55 36.01 0.13 6.49 16 20 F -0.15 -1.82 17.13 2.25 0.04 -1.78 16 21 F -0.16 -1.65 17.30 2.25 0.04 -1.61 16 22 F -0.16 -1.74 17.30 2.25 0.04 -1.70 16 23 S 0.26 2.91 23.04 -107.50 -2.48 0.44 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.48 6.42 -51.93 -0.33 0.15 16 26 H 0.07 1.50 7.05 -51.93 -0.37 1.14 16 27 H 0.10 2.33 6.25 -51.93 -0.32 2.01 16 28 H 0.01 0.21 7.24 -51.93 -0.38 -0.16 16 29 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 30 H 0.33 5.90 6.55 -39.29 -0.26 5.64 16 31 H 0.11 1.75 8.13 -51.93 -0.42 1.32 16 32 H 0.06 0.77 7.23 -51.93 -0.38 0.40 16 LS Contribution 300.57 15.07 4.53 4.53 Total: -1.00 -26.87 300.57 -5.37 -32.25 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -2.83 Total: 0.62 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -0.39 Total: -5.38 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: 0.70 Total: -42.91 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 0.12 Total: -5.10 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 2.91 SS G_CDS: -2.48 Total: 0.44 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.87 -5.37 -32.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.774 kcal (2) G-P(sol) polarization free energy of solvation -26.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds