Wall clock time and date at job start Tue Mar 31 2020 07:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46789 * 2 1 4 4 H 1.09004 * 109.47088 * 174.08816 * 3 2 1 5 5 C 1.50706 * 109.46936 * 54.09407 * 3 2 1 6 6 H 1.07999 * 119.99618 * 240.00014 * 5 3 2 7 7 C 1.37874 * 119.99991 * 59.99479 * 5 3 2 8 8 N 1.31510 * 120.00397 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99859 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47145 * 59.99902 * 9 7 5 11 11 H 1.48495 * 109.47609 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47269 * 300.00244 * 9 7 5 13 13 N 1.46894 * 109.47279 * 294.09067 * 3 2 1 14 14 C 1.46896 * 111.00270 * 275.76020 * 13 3 2 15 15 C 1.50698 * 109.47416 * 176.22474 * 14 13 3 16 16 N 1.29413 * 125.70147 * 90.02328 * 15 14 13 17 17 N 1.26394 * 116.47611 * 179.97438 * 16 15 14 18 18 C 1.29410 * 116.47807 * 359.97438 * 17 16 15 19 19 C 1.50703 * 125.69666 * 179.97438 * 18 17 16 20 20 F 1.39895 * 109.47091 * 5.02036 * 19 18 17 21 21 F 1.39904 * 109.47018 * 125.02659 * 19 18 17 22 22 F 1.39905 * 109.46749 * 245.02312 * 19 18 17 23 23 S 1.71220 * 125.69101 * 269.71322 * 15 14 13 24 24 H 1.09001 * 109.46781 * 178.55338 * 1 2 3 25 25 H 1.09005 * 109.47185 * 58.55739 * 1 2 3 26 26 H 1.08994 * 109.47502 * 298.55639 * 1 2 3 27 27 H 1.08994 * 109.47284 * 120.00015 * 2 1 3 28 28 H 1.08997 * 109.47022 * 240.00750 * 2 1 3 29 29 H 0.96995 * 120.00287 * 180.02562 * 8 7 5 30 30 H 1.00896 * 111.00360 * 39.71501 * 13 3 2 31 31 H 1.09006 * 109.46730 * 296.21974 * 14 13 3 32 32 H 1.08996 * 109.47238 * 56.21437 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1248 1.4445 0.1059 5 6 1.4217 2.1939 1.1509 6 1 0.8147 3.0670 0.9619 7 6 1.6309 1.7666 2.4449 8 7 2.3703 0.7036 2.6751 9 14 0.8640 2.6974 3.8714 10 1 -0.6140 2.6943 3.7270 11 1 1.2383 2.0407 5.1495 12 1 1.3583 4.0978 3.8716 13 7 1.6701 2.0927 -1.2643 14 6 2.6511 1.7945 -2.3163 15 6 2.1916 2.3994 -3.6178 16 7 2.4775 3.5886 -4.0404 17 7 1.9980 3.9184 -5.1624 18 6 1.2747 3.0300 -5.7643 19 6 0.6047 3.2017 -7.1033 20 9 0.9763 4.4319 -7.6562 21 9 0.9999 2.1675 -7.9586 22 9 -0.7840 3.1652 -6.9379 23 16 1.2101 1.6251 -4.7877 24 1 -0.3633 -1.0274 -0.0259 25 1 -0.3634 0.5361 -0.8768 26 1 -0.3634 0.4912 0.9026 27 1 1.8933 -0.5138 0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 2.5171 0.4028 3.5854 30 1 0.7405 1.8246 -1.5504 31 1 3.6181 2.2157 -2.0412 32 1 2.7445 0.7145 -2.4304 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595530860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:08 Heat of formation + Delta-G solvation = -98.556540 kcal Electronic energy + Delta-G solvation = -21173.960597 eV Core-core repulsion = 17267.597546 eV Total energy + Delta-G solvation = -3906.363052 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.066 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -51.46420 -48.98831 -48.94181 -42.77373 -38.57529 -35.25001 -33.66399 -32.30074 -30.04184 -28.28770 -26.70424 -25.35046 -24.91832 -22.10033 -21.30105 -21.00652 -19.88921 -19.39468 -19.22438 -18.10116 -17.22421 -16.77865 -16.39062 -15.86753 -15.73150 -15.72615 -15.35843 -15.18149 -15.07655 -15.06620 -14.80277 -14.46942 -14.25998 -14.14325 -13.72617 -13.40453 -12.80949 -12.69536 -12.42827 -12.04808 -11.88445 -11.85071 -11.59177 -11.47960 -11.38745 -11.05464 -10.98699 -10.41533 -9.10355 -8.05609 -6.12594 -1.21175 -0.67681 -0.17155 1.01063 1.03563 1.45242 1.47129 1.53411 2.10761 2.46465 2.74804 2.87403 2.95665 3.24761 3.52816 3.62991 3.82998 4.33125 4.52562 4.59074 4.64294 4.77812 5.11708 5.31109 5.42827 5.72430 5.77860 5.80282 6.29428 6.56444 6.67555 6.96265 7.04947 7.54517 8.99392 Molecular weight = 295.07amu Principal moments of inertia in cm(-1) A = 0.031829 B = 0.003429 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.480586 B = 8162.588106 C = 8327.707574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.141 4.141 3 C 0.223 3.777 4 H 0.012 0.988 5 C -0.503 4.503 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.916 5.916 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.683 5.683 14 C 0.132 3.868 15 C 0.009 3.991 16 N -0.271 5.271 17 N -0.220 5.220 18 C -0.171 4.171 19 C 0.573 3.427 20 F -0.157 7.157 21 F -0.153 7.153 22 F -0.156 7.156 23 S 0.355 5.645 24 H 0.047 0.953 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.260 0.740 30 H 0.336 0.664 31 H 0.098 0.902 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.144 -2.790 -18.756 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.181 4.181 3 C 0.115 3.885 4 H 0.030 0.970 5 C -0.542 4.542 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.556 5.556 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.317 5.317 14 C -0.001 4.001 15 C -0.267 4.267 16 N -0.111 5.111 17 N -0.062 5.062 18 C -0.450 4.450 19 C 0.514 3.486 20 F -0.138 7.138 21 F -0.134 7.134 22 F -0.137 7.137 23 S 0.599 5.401 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.155 0.845 31 H 0.116 0.884 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.651 -2.000 -18.458 18.921 hybrid contribution -0.352 -0.055 0.743 0.824 sum -4.003 -2.054 -17.715 18.277 Atomic orbital electron populations 1.21491 0.96100 0.99598 1.00864 1.21992 0.96407 0.99357 1.00329 1.19017 0.94675 0.89718 0.85069 0.97007 1.21189 1.30635 1.11471 0.90895 0.93275 1.25450 0.95925 0.95818 1.00610 1.69959 1.39851 1.24947 1.20806 0.85814 0.79101 0.78766 0.79124 1.19799 1.21222 1.20597 1.60771 1.04333 1.63849 1.02707 1.20604 0.97990 0.98246 0.83237 1.29824 0.99073 0.94080 1.03702 1.71616 1.20584 1.13967 1.04970 1.71508 1.05875 1.27169 1.01620 1.29354 1.10015 1.00516 1.05074 1.16388 0.76280 0.74989 0.80961 1.93270 1.91215 1.43213 1.86107 1.93295 1.90589 1.58162 1.71379 1.93299 1.28871 1.96129 1.95412 1.83422 1.40652 1.10378 1.05652 0.93439 0.93199 0.94268 0.91665 0.94143 0.93115 0.84469 0.88368 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 9.39 71.98 0.68 -3.83 16 2 C -0.14 -5.73 5.50 30.60 0.17 -5.56 16 3 C 0.22 9.98 2.33 44.17 0.10 10.09 16 4 H 0.01 0.60 7.86 -2.39 -0.02 0.58 16 5 C -0.50 -25.85 7.35 25.60 0.19 -25.66 16 6 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 7 C 0.02 1.09 5.22 84.65 0.44 1.53 16 8 N -0.92 -49.40 11.39 21.45 0.24 -49.16 16 9 Si 0.94 42.45 29.54 68.60 2.03 44.47 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 13 N -0.68 -25.39 6.24 -499.46 -3.12 -28.51 16 14 C 0.13 3.93 6.08 85.56 0.52 4.45 16 15 C 0.01 0.26 7.00 88.46 0.62 0.88 16 16 N -0.27 -8.83 11.66 -50.85 -0.59 -9.42 16 17 N -0.22 -6.70 11.41 -50.84 -0.58 -7.28 16 18 C -0.17 -4.07 6.83 88.47 0.60 -3.46 16 19 C 0.57 11.59 3.55 71.24 0.25 11.84 16 20 F -0.16 -3.54 17.13 44.97 0.77 -2.77 16 21 F -0.15 -2.68 17.30 44.97 0.78 -1.90 16 22 F -0.16 -2.98 17.30 44.97 0.78 -2.20 16 23 S 0.35 6.91 23.04 -56.49 -1.30 5.61 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.05 1.58 6.42 -2.38 -0.02 1.56 16 26 H 0.04 1.66 7.05 -2.39 -0.02 1.64 16 27 H 0.06 3.11 6.25 -2.39 -0.01 3.09 16 28 H 0.04 1.38 7.24 -2.39 -0.02 1.36 16 29 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 30 H 0.34 11.40 6.55 -89.70 -0.59 10.81 16 31 H 0.10 3.13 8.13 -2.38 -0.02 3.11 16 32 H 0.08 2.00 7.23 -2.39 -0.02 1.98 16 Total: -1.00 -58.20 300.57 3.18 -55.02 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: 0.60 Total: 5.86 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 3.57 Total: -9.73 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -4.05 Total: -94.36 kcal Atomic # 9 Polarization: -9.20 SS G_CDS: 2.33 Total: -6.88 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 6.91 SS G_CDS: -1.30 Total: 5.61 kcal Total: -58.20 3.18 -55.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.537 kcal (2) G-P(sol) polarization free energy of solvation -58.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds