Wall clock time and date at job start Tue Mar 31 2020 06:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47458 * 269.99758 * 3 2 1 5 5 H 1.48506 * 109.47359 * 30.00249 * 3 2 1 6 6 H 1.48510 * 109.47040 * 150.00135 * 3 2 1 7 7 C 1.38796 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00360 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99638 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99904 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99725 * 179.97438 * 11 10 9 14 14 C 1.47933 * 134.63226 * 359.91930 * 13 11 10 15 15 C 1.53943 * 86.11862 * 204.69645 * 14 13 11 16 16 C 1.47582 * 134.49019 * 179.97438 * 13 11 10 17 17 H 1.09002 * 113.77116 * 269.66462 * 16 13 11 18 18 C 1.50700 * 113.77006 * 40.95059 * 16 13 11 19 19 C 1.38244 * 119.97358 * 37.70971 * 18 16 13 20 20 C 1.38204 * 120.02511 * 179.76663 * 19 18 16 21 21 C 1.38459 * 119.97162 * 0.51125 * 20 19 18 22 22 F 1.35100 * 120.02368 * 179.76598 * 21 20 19 23 23 C 1.38455 * 119.94764 * 359.74238 * 21 20 19 24 24 C 1.38191 * 119.97886 * 0.02562 * 23 21 20 25 25 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46849 * 60.00138 * 10 9 7 27 27 H 1.08992 * 109.47235 * 299.99826 * 10 9 7 28 28 H 1.08998 * 113.76908 * 90.39544 * 14 13 11 29 29 H 1.09001 * 113.76696 * 319.00113 * 14 13 11 30 30 H 1.09000 * 113.74388 * 222.04767 * 15 14 13 31 31 H 1.09003 * 113.73860 * 90.73967 * 15 14 13 32 32 H 1.08004 * 119.98953 * 0.02562 * 19 18 16 33 33 H 1.08001 * 120.01172 * 180.25228 * 20 19 18 34 34 H 1.08001 * 120.00866 * 180.02562 * 23 21 20 35 35 H 1.08001 * 119.99191 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2323 -0.0002 12 8 6.3442 -2.2960 0.0003 13 7 6.0459 -4.4945 0.0001 14 6 5.4245 -5.8370 0.0020 15 6 6.7355 -6.3280 0.6422 16 6 7.3945 -5.0938 -0.0004 17 1 7.7931 -5.2780 -0.9981 18 6 8.3731 -4.3882 0.9027 19 6 7.9519 -3.8875 2.1204 20 6 8.8495 -3.2444 2.9516 21 6 10.1687 -3.0925 2.5595 22 9 11.0460 -2.4599 3.3691 23 6 10.5881 -3.5898 1.3373 24 6 9.6899 -4.2366 0.5100 25 1 -0.4850 0.8400 -0.0004 26 1 3.6442 -3.4312 -0.8904 27 1 3.6435 -3.4317 0.8895 28 1 5.2448 -6.2393 -0.9949 29 1 4.5577 -5.9189 0.6578 30 1 7.0927 -7.2758 0.2393 31 1 6.7276 -6.3042 1.7320 32 1 6.9219 -4.0025 2.4243 33 1 8.5211 -2.8569 3.9047 34 1 11.6170 -3.4721 1.0306 35 1 10.0168 -4.6242 -0.4436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598101201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:39 Heat of formation + Delta-G solvation = -18.334875 kcal Electronic energy + Delta-G solvation = -20571.951109 eV Core-core repulsion = 17191.003508 eV Total energy + Delta-G solvation = -3380.947601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.98402 -40.70461 -38.59474 -37.33906 -32.45341 -31.56869 -31.24332 -30.26348 -28.20513 -25.82141 -25.58179 -23.30001 -22.29321 -21.69673 -18.98147 -17.90135 -17.70395 -16.80303 -16.76759 -16.05137 -15.69170 -15.42561 -14.98419 -14.91009 -14.40625 -13.96081 -13.67372 -13.62930 -13.37457 -13.27071 -12.84728 -12.61139 -12.54247 -12.17467 -11.99104 -11.65652 -11.27866 -11.20112 -11.01895 -10.99572 -10.61731 -9.86659 -9.49957 -9.19933 -9.01689 -8.80421 -8.57186 -8.49830 -6.93502 -6.30346 -4.02217 0.94333 1.14054 2.56868 2.94901 3.07767 3.32197 3.47402 3.49997 3.60742 4.14778 4.17667 4.31703 4.44874 4.50111 4.57537 4.74903 4.81210 4.92040 5.08874 5.09363 5.11813 5.19690 5.29742 5.35382 5.45916 5.72690 5.73805 5.83015 5.88122 5.91045 5.99455 6.00314 6.11234 6.41232 6.75971 7.73728 7.92751 8.39902 8.44591 9.15948 10.78905 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.004095 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.807750 B = 6836.533379 C = 7953.107426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.097 3.903 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.116 4.116 11 C 0.551 3.449 12 O -0.508 6.508 13 N -0.647 5.647 14 C 0.101 3.899 15 C -0.144 4.144 16 C 0.176 3.824 17 H 0.100 0.900 18 C -0.095 4.095 19 C -0.054 4.054 20 C -0.152 4.152 21 C 0.099 3.901 22 F -0.142 7.142 23 C -0.157 4.157 24 C -0.076 4.076 25 H 0.271 0.729 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.760 -15.675 2.224 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.112 4.112 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.266 4.266 11 C 0.340 3.660 12 O -0.381 6.381 13 N -0.386 5.386 14 C -0.022 4.022 15 C -0.182 4.182 16 C 0.072 3.928 17 H 0.118 0.882 18 C -0.096 4.096 19 C -0.073 4.073 20 C -0.171 4.171 21 C 0.080 3.920 22 F -0.121 7.121 23 C -0.176 4.176 24 C -0.095 4.095 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.113 0.887 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 18.654 -13.917 2.252 23.382 hybrid contribution -0.775 -0.063 0.002 0.778 sum 17.878 -13.980 2.254 22.807 Atomic orbital electron populations 1.69938 1.05908 1.27783 1.48068 1.24698 0.94431 0.98923 0.93140 0.86749 0.81913 0.83313 0.79970 1.19188 1.19893 1.15937 1.22308 0.88246 0.97524 1.58825 0.89417 1.84812 1.09295 1.00005 1.97418 1.23225 0.93732 1.04121 1.05573 1.20035 0.90352 0.80531 0.75092 1.90733 1.58731 1.40859 1.47799 1.50361 1.07841 1.04547 1.75885 1.23207 0.97453 0.80418 1.01110 1.23675 0.95468 0.97239 1.01786 1.21589 0.83843 0.89759 0.97565 0.88196 1.19762 0.94135 1.00420 0.95279 1.20762 0.99174 0.94623 0.92697 1.21133 0.91827 1.02239 1.01879 1.17735 0.87603 0.96824 0.89864 1.91489 1.68447 1.79862 1.72302 1.21044 1.01162 1.01662 0.93743 1.20800 0.92297 0.97365 0.99020 0.91922 0.88737 0.88721 0.89468 0.89571 0.89374 0.88677 0.85374 0.84730 0.84813 0.85041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 2 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 3 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 7 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 8 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 10 C -0.12 -2.28 5.92 36.01 0.21 -2.06 16 11 C 0.55 9.94 7.54 -10.98 -0.08 9.86 16 12 O -0.51 -11.10 15.62 5.55 0.09 -11.01 16 13 N -0.65 -8.34 3.04 -171.37 -0.52 -8.86 16 14 C 0.10 0.84 8.63 -2.78 -0.02 0.82 16 15 C -0.14 -0.98 7.76 -25.78 -0.20 -1.18 16 16 C 0.18 1.76 4.44 -68.00 -0.30 1.46 16 17 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 18 C -0.10 -1.10 4.80 -104.62 -0.50 -1.60 16 19 C -0.05 -0.69 8.11 -39.59 -0.32 -1.01 16 20 C -0.15 -1.91 10.03 -39.51 -0.40 -2.31 16 21 C 0.10 1.24 7.30 -39.42 -0.29 0.95 16 22 F -0.14 -1.84 17.27 2.25 0.04 -1.80 16 23 C -0.16 -1.70 10.03 -39.52 -0.40 -2.10 16 24 C -0.08 -0.79 9.71 -39.60 -0.38 -1.17 16 25 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 27 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.66 7.71 -51.93 -0.40 0.26 16 32 H 0.13 1.65 7.75 -52.48 -0.41 1.24 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.13 0.99 8.05 -52.49 -0.42 0.57 16 LS Contribution 321.71 15.07 4.85 4.85 Total: -1.00 -34.82 321.71 -8.14 -42.96 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.19 Total: -1.55 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -2.47 Total: -10.36 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.25 Total: -34.68 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.82 -8.14 -42.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598101201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.626 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds