Wall clock time and date at job start Tue Mar 31 2020 06:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 119.99623 * 2 1 4 4 H 1.48500 * 109.47458 * 269.99758 * 3 2 1 5 5 H 1.48506 * 109.47359 * 30.00249 * 3 2 1 6 6 H 1.48510 * 109.47040 * 150.00135 * 3 2 1 7 7 C 1.38796 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00360 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99638 * 180.02562 * 7 2 1 10 10 C 1.81004 * 99.99904 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47009 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99725 * 179.97438 * 11 10 9 14 14 C 1.47933 * 134.63226 * 359.91930 * 13 11 10 15 15 C 1.53943 * 86.11862 * 204.69645 * 14 13 11 16 16 C 1.47582 * 134.49019 * 179.97438 * 13 11 10 17 17 H 1.09002 * 113.77116 * 269.66462 * 16 13 11 18 18 C 1.50700 * 113.77006 * 40.95059 * 16 13 11 19 19 C 1.38244 * 119.97358 * 37.70971 * 18 16 13 20 20 C 1.38204 * 120.02511 * 179.76663 * 19 18 16 21 21 C 1.38459 * 119.97162 * 0.51125 * 20 19 18 22 22 F 1.35100 * 120.02368 * 179.76598 * 21 20 19 23 23 C 1.38455 * 119.94764 * 359.74238 * 21 20 19 24 24 C 1.38191 * 119.97886 * 0.02562 * 23 21 20 25 25 H 0.96999 * 120.00288 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.46849 * 60.00138 * 10 9 7 27 27 H 1.08992 * 109.47235 * 299.99826 * 10 9 7 28 28 H 1.08998 * 113.76908 * 90.39544 * 14 13 11 29 29 H 1.09001 * 113.76696 * 319.00113 * 14 13 11 30 30 H 1.09000 * 113.74388 * 222.04767 * 15 14 13 31 31 H 1.09003 * 113.73860 * 90.73967 * 15 14 13 32 32 H 1.08004 * 119.98953 * 0.02562 * 19 18 16 33 33 H 1.08001 * 120.01172 * 180.25228 * 20 19 18 34 34 H 1.08001 * 120.00866 * 180.02562 * 23 21 20 35 35 H 1.08001 * 119.99191 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 16 3.7723 -1.2019 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2323 -0.0002 12 8 6.3442 -2.2960 0.0003 13 7 6.0459 -4.4945 0.0001 14 6 5.4245 -5.8370 0.0020 15 6 6.7355 -6.3280 0.6422 16 6 7.3945 -5.0938 -0.0004 17 1 7.7931 -5.2780 -0.9981 18 6 8.3731 -4.3882 0.9027 19 6 7.9519 -3.8875 2.1204 20 6 8.8495 -3.2444 2.9516 21 6 10.1687 -3.0925 2.5595 22 9 11.0460 -2.4599 3.3691 23 6 10.5881 -3.5898 1.3373 24 6 9.6899 -4.2366 0.5100 25 1 -0.4850 0.8400 -0.0004 26 1 3.6442 -3.4312 -0.8904 27 1 3.6435 -3.4317 0.8895 28 1 5.2448 -6.2393 -0.9949 29 1 4.5577 -5.9189 0.6578 30 1 7.0927 -7.2758 0.2393 31 1 6.7276 -6.3042 1.7320 32 1 6.9219 -4.0025 2.4243 33 1 8.5211 -2.8569 3.9047 34 1 11.6170 -3.4721 1.0306 35 1 10.0168 -4.6242 -0.4436 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598101201.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:38 Heat of formation + Delta-G solvation = -39.752498 kcal Electronic energy + Delta-G solvation = -20572.879846 eV Core-core repulsion = 17191.003508 eV Total energy + Delta-G solvation = -3381.876338 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.94397 -41.63967 -39.63349 -38.46285 -34.69848 -32.63588 -32.12071 -31.38456 -29.39027 -27.86611 -26.58547 -24.15632 -23.11131 -22.68141 -20.26346 -19.47624 -18.76463 -18.05198 -17.66561 -17.21202 -17.01704 -16.69618 -16.59013 -16.15100 -15.69353 -15.41100 -14.94075 -14.52168 -14.48109 -14.35668 -14.26742 -13.78599 -13.46758 -13.38503 -13.20585 -13.03884 -12.93875 -12.65108 -12.32015 -12.05006 -11.88934 -11.77059 -11.19658 -10.84071 -10.55905 -10.07311 -9.80669 -9.49523 -9.02550 -8.54181 -6.25091 0.04502 0.27022 0.95192 1.28481 1.42889 1.50125 1.59967 1.97882 2.22402 2.60325 2.68706 2.84170 3.25819 3.45497 3.59592 3.67888 3.73894 3.92744 4.11726 4.19560 4.28879 4.32003 4.41012 4.44376 4.55820 4.69024 4.86593 4.93814 5.00396 5.02349 5.12621 5.21834 5.29376 5.55358 5.68314 5.89463 6.08453 6.63002 6.91234 7.13662 8.58381 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.004095 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.807750 B = 6836.533379 C = 7953.107426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.049 3.951 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.257 1.257 6 H -0.240 1.240 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.101 4.101 11 C 0.551 3.449 12 O -0.557 6.557 13 N -0.646 5.646 14 C 0.096 3.904 15 C -0.122 4.122 16 C 0.168 3.832 17 H 0.126 0.874 18 C -0.104 4.104 19 C -0.071 4.071 20 C -0.169 4.169 21 C 0.078 3.922 22 F -0.150 7.150 23 C -0.156 4.156 24 C -0.074 4.074 25 H 0.277 0.723 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.119 0.881 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.419 -17.587 1.205 26.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.157 4.157 3 Si 0.734 3.266 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.164 1.164 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.050 5.950 10 C -0.252 4.252 11 C 0.340 3.660 12 O -0.435 6.435 13 N -0.383 5.383 14 C -0.025 4.025 15 C -0.160 4.160 16 C 0.066 3.934 17 H 0.144 0.856 18 C -0.104 4.104 19 C -0.089 4.089 20 C -0.187 4.187 21 C 0.059 3.941 22 F -0.129 7.129 23 C -0.175 4.175 24 C -0.092 4.092 25 H 0.087 0.913 26 H 0.124 0.876 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 20.308 -15.902 1.238 25.823 hybrid contribution -1.257 0.312 0.315 1.333 sum 19.051 -15.591 1.553 24.666 Atomic orbital electron populations 1.70010 1.07236 1.29048 1.49101 1.25516 0.95230 1.02090 0.92836 0.85900 0.80624 0.79788 0.80257 1.18625 1.18165 1.16373 1.22447 0.90191 0.96682 1.58346 0.92004 1.84736 1.06494 1.06212 1.97555 1.23180 0.96120 0.99245 1.06671 1.19610 0.88950 0.82046 0.75442 1.90706 1.59229 1.42911 1.50672 1.50464 1.10439 1.04144 1.73258 1.23635 0.98481 0.77416 1.02996 1.23604 0.93409 0.97379 1.01576 1.22076 0.82221 0.90149 0.98947 0.85644 1.20054 0.95237 1.00232 0.94916 1.20790 0.98756 0.95684 0.93693 1.21257 0.92338 1.02843 1.02312 1.17985 0.87565 0.97784 0.90782 1.91464 1.68564 1.80156 1.72674 1.21386 1.02527 1.00703 0.92878 1.21202 0.91596 0.96431 1.00005 0.91304 0.87558 0.87630 0.86868 0.89142 0.85431 0.88951 0.86345 0.84692 0.82505 0.81668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.01 13.97 21.65 0.30 -55.71 16 2 C 0.05 2.89 5.50 84.86 0.47 3.36 16 3 Si 0.91 45.57 27.74 68.60 1.90 47.47 16 4 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 7 C -0.53 -31.14 10.04 67.95 0.68 -30.45 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 9 S -0.18 -9.10 18.55 -56.49 -1.05 -10.15 16 10 C -0.10 -3.93 5.92 71.24 0.42 -3.51 16 11 C 0.55 19.40 7.54 87.66 0.66 20.06 16 12 O -0.56 -24.34 15.62 -3.04 -0.05 -24.39 16 13 N -0.65 -15.11 3.04 -814.48 -2.48 -17.58 16 14 C 0.10 1.23 8.63 86.41 0.75 1.98 16 15 C -0.12 -1.14 7.76 31.26 0.24 -0.89 16 16 C 0.17 2.77 4.44 44.35 0.20 2.97 16 17 H 0.13 1.51 8.09 -2.39 -0.02 1.49 16 18 C -0.10 -2.18 4.80 -19.86 -0.10 -2.27 16 19 C -0.07 -1.78 8.11 22.26 0.18 -1.60 16 20 C -0.17 -4.33 10.03 22.31 0.22 -4.10 16 21 C 0.08 1.93 7.30 22.37 0.16 2.09 16 22 F -0.15 -3.88 17.27 44.97 0.78 -3.11 16 23 C -0.16 -3.09 10.03 22.31 0.22 -2.87 16 24 C -0.07 -1.32 9.71 22.26 0.22 -1.10 16 25 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 27 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 28 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.98 7.71 -2.39 -0.02 0.96 16 32 H 0.12 3.09 7.75 -2.91 -0.02 3.07 16 33 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 35 H 0.17 1.75 8.05 -2.91 -0.02 1.73 16 Total: -1.00 -77.93 321.71 4.80 -73.13 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: 1.06 Total: 6.68 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: 4.33 Total: -16.34 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -2.17 Total: -73.29 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.78 Total: -3.11 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.47 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -77.93 4.80 -73.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598101201.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.378 kcal (2) G-P(sol) polarization free energy of solvation -77.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds