Wall clock time and date at job start Tue Mar 31 2020 06:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48507 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47190 * 299.99871 * 3 2 1 6 6 H 1.48496 * 109.47312 * 59.99776 * 3 2 1 7 7 C 1.38797 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99584 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.47067 * 136.05728 * 359.62604 * 13 11 10 15 15 C 1.53760 * 87.88554 * 152.96685 * 14 13 11 16 16 C 1.47065 * 136.05555 * 180.02562 * 13 11 10 17 17 H 1.08999 * 113.47320 * 92.29670 * 16 13 11 18 18 C 1.50704 * 113.46704 * 321.85510 * 16 13 11 19 19 C 1.38240 * 119.97698 * 319.73674 * 18 16 13 20 20 C 1.38203 * 120.02749 * 179.72473 * 19 18 16 21 21 C 1.38454 * 119.96846 * 0.56235 * 20 19 18 22 22 F 1.35108 * 120.02387 * 179.68493 * 21 20 19 23 23 C 1.38463 * 119.95386 * 359.70790 * 21 20 19 24 24 C 1.38199 * 119.97103 * 359.97438 * 23 21 20 25 25 H 0.97001 * 120.00629 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47654 * 60.00189 * 10 9 7 27 27 H 1.08998 * 109.47543 * 300.00143 * 10 9 7 28 28 H 1.09001 * 113.46603 * 267.69662 * 14 13 11 29 29 H 1.09000 * 113.46640 * 38.13972 * 14 13 11 30 30 H 1.09000 * 114.39462 * 272.67775 * 15 14 13 31 31 H 1.09002 * 114.26542 * 139.78966 * 15 14 13 32 32 H 1.07997 * 119.98626 * 359.96991 * 19 18 16 33 33 H 1.07998 * 120.01190 * 180.29235 * 20 19 18 34 34 H 1.08002 * 120.01365 * 179.97438 * 23 21 20 35 35 H 1.08001 * 119.98349 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0030 12 8 0.7912 -5.5023 0.0030 13 7 2.8443 -6.3430 -0.0013 14 6 4.3052 -6.5117 -0.0140 15 6 4.0983 -7.8625 0.6907 16 6 2.7296 -7.8092 -0.0026 17 1 2.7321 -8.2440 -1.0022 18 6 1.6021 -8.3238 0.8547 19 6 1.3449 -7.7399 2.0811 20 6 0.3076 -8.2073 2.8656 21 6 -0.4668 -9.2683 2.4280 22 9 -1.4771 -9.7302 3.1969 23 6 -0.2048 -9.8560 1.2020 24 6 0.8289 -9.3826 0.4163 25 1 -0.4851 0.8400 -0.0004 26 1 3.1239 -3.7309 0.8925 27 1 3.1252 -3.7317 -0.8874 28 1 4.7227 -6.6046 -1.0165 29 1 4.8321 -5.7782 0.5964 30 1 4.0514 -7.8006 1.7779 31 1 4.7500 -8.6593 0.3321 32 1 1.9524 -6.9157 2.4245 33 1 0.1040 -7.7479 3.8216 34 1 -0.8080 -10.6839 0.8598 35 1 1.0332 -9.8406 -0.5402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598101202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:41 Heat of formation + Delta-G solvation = -14.676842 kcal Electronic energy + Delta-G solvation = -20510.046081 eV Core-core repulsion = 17129.257105 eV Total energy + Delta-G solvation = -3380.788976 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.91936 -40.76902 -38.52445 -37.33612 -32.44454 -31.47828 -31.17889 -30.19166 -28.13666 -25.65909 -25.42735 -23.26081 -22.27544 -21.66310 -18.91008 -17.84800 -17.68513 -16.72453 -16.67275 -15.97954 -15.62856 -15.33155 -14.86458 -14.81631 -14.33187 -13.97056 -13.61472 -13.54731 -13.41621 -13.16541 -12.73338 -12.58163 -12.40935 -12.08793 -11.90347 -11.62745 -11.11378 -11.08184 -11.03340 -10.79565 -10.75699 -9.82330 -9.41751 -9.13227 -9.08866 -8.72364 -8.49859 -8.24294 -6.51882 -6.23115 -3.93965 1.01907 1.20582 2.75045 3.06812 3.20453 3.23163 3.29550 3.47473 3.65586 4.16271 4.19014 4.21302 4.51624 4.63408 4.68151 4.82839 4.88575 5.09928 5.12230 5.16169 5.23888 5.33582 5.38856 5.49962 5.54125 5.80317 5.83707 5.89897 5.94233 5.98991 6.06025 6.12678 6.17711 6.47730 6.82676 7.58323 7.86780 8.33882 8.56247 9.22227 10.84372 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.003671 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.131288 B = 7624.760710 C = 8552.537474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.144 4.144 11 C 0.558 3.442 12 O -0.504 6.504 13 N -0.649 5.649 14 C 0.099 3.901 15 C -0.146 4.146 16 C 0.173 3.827 17 H 0.099 0.901 18 C -0.096 4.096 19 C -0.054 4.054 20 C -0.151 4.151 21 C 0.098 3.902 22 F -0.143 7.143 23 C -0.157 4.157 24 C -0.078 4.078 25 H 0.268 0.732 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.102 -20.085 2.034 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.295 4.295 11 C 0.348 3.652 12 O -0.377 6.377 13 N -0.388 5.388 14 C -0.024 4.024 15 C -0.184 4.184 16 C 0.069 3.931 17 H 0.116 0.884 18 C -0.097 4.097 19 C -0.073 4.073 20 C -0.170 4.170 21 C 0.079 3.921 22 F -0.121 7.121 23 C -0.176 4.176 24 C -0.096 4.096 25 H 0.078 0.922 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 6.946 -20.059 2.058 21.327 hybrid contribution 1.686 1.338 0.015 2.153 sum 8.633 -18.721 2.073 20.720 Atomic orbital electron populations 1.70028 1.05964 1.27378 1.46888 1.24991 0.95016 0.99029 0.94508 0.86117 0.79579 0.81869 0.77931 1.19605 1.20539 1.20540 1.22899 0.94920 0.91606 1.58923 0.90903 1.85425 1.04855 0.96332 1.96709 1.23478 1.06468 0.94768 1.04749 1.19970 0.85468 0.84820 0.74961 1.90741 1.14621 1.84729 1.47584 1.49954 1.07774 1.05057 1.76048 1.22951 0.82353 0.96420 1.00699 1.23613 0.95714 0.97820 1.01275 1.21486 0.92491 0.81345 0.97763 0.88367 1.19827 0.97916 0.96666 0.95262 1.20750 0.95953 0.97585 0.92989 1.21125 0.96819 0.97040 1.01989 1.17731 0.87759 0.96034 0.90585 1.91489 1.57974 1.87998 1.74677 1.21043 1.00250 1.02362 0.93937 1.20807 0.93814 0.95908 0.99089 0.92212 0.89442 0.89425 0.89723 0.90055 0.88500 0.89094 0.85418 0.84744 0.84860 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.28 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.14 -2.95 5.98 36.01 0.22 -2.74 16 11 C 0.56 10.63 7.66 -10.98 -0.08 10.55 16 12 O -0.50 -11.62 15.66 5.56 0.09 -11.53 16 13 N -0.65 -8.86 3.16 -178.62 -0.56 -9.43 16 14 C 0.10 0.88 8.42 -8.37 -0.07 0.81 16 15 C -0.15 -1.06 7.94 -26.07 -0.21 -1.27 16 16 C 0.17 1.83 4.24 -73.53 -0.31 1.51 16 17 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 18 C -0.10 -1.17 4.79 -104.62 -0.50 -1.67 16 19 C -0.05 -0.73 8.10 -39.59 -0.32 -1.05 16 20 C -0.15 -2.00 10.03 -39.51 -0.40 -2.39 16 21 C 0.10 1.29 7.30 -39.42 -0.29 1.00 16 22 F -0.14 -1.92 17.27 2.25 0.04 -1.88 16 23 C -0.16 -1.80 10.03 -39.51 -0.40 -2.19 16 24 C -0.08 -0.85 9.70 -39.59 -0.38 -1.23 16 25 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 27 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.72 7.63 -51.93 -0.40 0.32 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.13 1.72 7.81 -52.49 -0.41 1.31 16 33 H 0.13 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.13 1.06 8.05 -52.49 -0.42 0.64 16 LS Contribution 324.45 15.07 4.89 4.89 Total: -1.00 -35.17 324.45 -8.75 -43.91 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.15 Total: -1.33 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.55 Total: -11.64 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.17 Total: -34.93 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.17 -8.75 -43.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598101202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.236 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds