Wall clock time and date at job start Tue Mar 31 2020 06:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48507 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47190 * 299.99871 * 3 2 1 6 6 H 1.48496 * 109.47312 * 59.99776 * 3 2 1 7 7 C 1.38797 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99584 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.47067 * 136.05728 * 359.62604 * 13 11 10 15 15 C 1.53760 * 87.88554 * 152.96685 * 14 13 11 16 16 C 1.47065 * 136.05555 * 180.02562 * 13 11 10 17 17 H 1.08999 * 113.47320 * 92.29670 * 16 13 11 18 18 C 1.50704 * 113.46704 * 321.85510 * 16 13 11 19 19 C 1.38240 * 119.97698 * 319.73674 * 18 16 13 20 20 C 1.38203 * 120.02749 * 179.72473 * 19 18 16 21 21 C 1.38454 * 119.96846 * 0.56235 * 20 19 18 22 22 F 1.35108 * 120.02387 * 179.68493 * 21 20 19 23 23 C 1.38463 * 119.95386 * 359.70790 * 21 20 19 24 24 C 1.38199 * 119.97103 * 359.97438 * 23 21 20 25 25 H 0.97001 * 120.00629 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47654 * 60.00189 * 10 9 7 27 27 H 1.08998 * 109.47543 * 300.00143 * 10 9 7 28 28 H 1.09001 * 113.46603 * 267.69662 * 14 13 11 29 29 H 1.09000 * 113.46640 * 38.13972 * 14 13 11 30 30 H 1.09000 * 114.39462 * 272.67775 * 15 14 13 31 31 H 1.09002 * 114.26542 * 139.78966 * 15 14 13 32 32 H 1.07997 * 119.98626 * 359.96991 * 19 18 16 33 33 H 1.07998 * 120.01190 * 180.29235 * 20 19 18 34 34 H 1.08002 * 120.01365 * 179.97438 * 23 21 20 35 35 H 1.08001 * 119.98349 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0030 12 8 0.7912 -5.5023 0.0030 13 7 2.8443 -6.3430 -0.0013 14 6 4.3052 -6.5117 -0.0140 15 6 4.0983 -7.8625 0.6907 16 6 2.7296 -7.8092 -0.0026 17 1 2.7321 -8.2440 -1.0022 18 6 1.6021 -8.3238 0.8547 19 6 1.3449 -7.7399 2.0811 20 6 0.3076 -8.2073 2.8656 21 6 -0.4668 -9.2683 2.4280 22 9 -1.4771 -9.7302 3.1969 23 6 -0.2048 -9.8560 1.2020 24 6 0.8289 -9.3826 0.4163 25 1 -0.4851 0.8400 -0.0004 26 1 3.1239 -3.7309 0.8925 27 1 3.1252 -3.7317 -0.8874 28 1 4.7227 -6.6046 -1.0165 29 1 4.8321 -5.7782 0.5964 30 1 4.0514 -7.8006 1.7779 31 1 4.7500 -8.6593 0.3321 32 1 1.9524 -6.9157 2.4245 33 1 0.1040 -7.7479 3.8216 34 1 -0.8080 -10.6839 0.8598 35 1 1.0332 -9.8406 -0.5402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598101202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:40 Heat of formation + Delta-G solvation = -36.488774 kcal Electronic energy + Delta-G solvation = -20510.991917 eV Core-core repulsion = 17129.257105 eV Total energy + Delta-G solvation = -3381.734813 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.94064 -41.74379 -39.61660 -38.55095 -34.60775 -32.60547 -32.11882 -31.36934 -29.39652 -27.67240 -26.44516 -24.17616 -23.17027 -22.67760 -20.22805 -19.45061 -18.76344 -18.01616 -17.63823 -17.05677 -16.90207 -16.72434 -16.60602 -16.12291 -15.72081 -15.39834 -14.72639 -14.50904 -14.37883 -14.27778 -14.23912 -13.77521 -13.43633 -13.26213 -13.15838 -12.93500 -12.90088 -12.61035 -12.35948 -12.02762 -11.73005 -11.60018 -11.17675 -10.83055 -10.29522 -10.06983 -9.78563 -9.49129 -8.69542 -8.36665 -6.15358 0.05922 0.27201 1.22782 1.40286 1.43423 1.55354 1.63874 2.02603 2.25778 2.62919 2.97667 3.24190 3.26047 3.44871 3.66109 3.73753 3.75409 3.92920 4.12624 4.24317 4.30983 4.32189 4.44736 4.46308 4.57157 4.69175 4.87429 4.93893 5.01705 5.03405 5.12635 5.22432 5.29400 5.39559 5.55858 5.90007 6.17803 6.69896 7.04558 7.18914 8.72919 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.003671 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.131288 B = 7624.760710 C = 8552.537474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.118 4.118 11 C 0.557 3.443 12 O -0.558 6.558 13 N -0.650 5.650 14 C 0.094 3.906 15 C -0.122 4.122 16 C 0.164 3.836 17 H 0.125 0.875 18 C -0.105 4.105 19 C -0.071 4.071 20 C -0.169 4.169 21 C 0.077 3.923 22 F -0.150 7.150 23 C -0.156 4.156 24 C -0.076 4.076 25 H 0.271 0.729 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.170 -21.281 0.971 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.179 1.179 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.269 4.269 11 C 0.346 3.654 12 O -0.436 6.436 13 N -0.387 5.387 14 C -0.028 4.028 15 C -0.160 4.160 16 C 0.062 3.938 17 H 0.143 0.857 18 C -0.106 4.106 19 C -0.090 4.090 20 C -0.188 4.188 21 C 0.058 3.942 22 F -0.129 7.129 23 C -0.175 4.175 24 C -0.094 4.094 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.131 0.869 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.151 0.849 32 H 0.136 0.864 33 H 0.152 0.848 34 H 0.175 0.825 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.084 -21.306 0.999 23.593 hybrid contribution 0.807 1.544 0.345 1.776 sum 10.891 -19.762 1.344 22.605 Atomic orbital electron populations 1.70193 1.08041 1.28592 1.48037 1.26138 0.95947 1.03346 0.93643 0.84895 0.78635 0.76218 0.78132 1.17924 1.19838 1.19904 1.23226 0.95293 0.91969 1.58900 0.90005 1.85600 1.10546 0.99250 1.97016 1.23268 1.03286 0.94326 1.06028 1.19577 0.85284 0.85311 0.75274 1.90713 1.16856 1.85450 1.50604 1.49964 1.09763 1.05546 1.73396 1.23387 0.79188 0.97423 1.02762 1.23562 0.93665 0.97923 1.00834 1.22007 0.93654 0.78829 0.99343 0.85698 1.20146 0.98692 0.96904 0.94861 1.20779 0.96310 0.97835 0.94033 1.21258 0.97419 0.97668 1.02456 1.17981 0.88035 0.96649 0.91557 1.91463 1.58280 1.88089 1.75024 1.21394 1.00449 1.02595 0.93043 1.21222 0.92807 0.95295 1.00087 0.91970 0.88035 0.87913 0.86908 0.89489 0.88907 0.84926 0.86420 0.84754 0.82476 0.81663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.61 13.22 21.65 0.29 -56.32 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.53 9.50 67.95 0.65 -30.89 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.12 -4.83 5.98 71.24 0.43 -4.40 16 11 C 0.56 21.15 7.66 87.66 0.67 21.82 16 12 O -0.56 -26.56 15.66 -3.04 -0.05 -26.60 16 13 N -0.65 -16.39 3.16 -837.41 -2.64 -19.04 16 14 C 0.09 1.29 8.42 83.27 0.70 1.99 16 15 C -0.12 -1.24 7.94 31.02 0.25 -1.00 16 16 C 0.16 2.94 4.24 41.05 0.17 3.11 16 17 H 0.13 1.65 8.08 -2.39 -0.02 1.63 16 18 C -0.11 -2.40 4.79 -19.86 -0.10 -2.50 16 19 C -0.07 -1.92 8.10 22.26 0.18 -1.74 16 20 C -0.17 -4.68 10.03 22.31 0.22 -4.46 16 21 C 0.08 2.04 7.30 22.37 0.16 2.20 16 22 F -0.15 -4.13 17.27 44.97 0.78 -3.35 16 23 C -0.16 -3.36 10.03 22.31 0.22 -3.14 16 24 C -0.08 -1.48 9.70 22.26 0.22 -1.27 16 25 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 27 H 0.10 3.84 8.14 -2.40 -0.02 3.82 16 28 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.09 1.08 7.63 -2.39 -0.02 1.07 16 31 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.12 3.30 7.81 -2.91 -0.02 3.27 16 33 H 0.13 3.48 8.06 -2.91 -0.02 3.46 16 34 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 35 H 0.17 2.01 8.05 -2.91 -0.02 1.98 16 Total: -1.00 -81.12 324.45 4.58 -76.53 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 1.10 Total: 11.71 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.24 Total: -18.99 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -2.36 Total: -75.36 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 9 Polarization: -4.13 SS G_CDS: 0.78 Total: -3.35 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -81.12 4.58 -76.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598101202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.046 kcal (2) G-P(sol) polarization free energy of solvation -81.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds