Wall clock time and date at job start Tue Mar 31 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99721 * 2 1 4 4 H 1.48500 * 109.47278 * 269.99644 * 3 2 1 5 5 H 1.48499 * 109.47371 * 29.99733 * 3 2 1 6 6 H 1.48509 * 109.47211 * 149.99817 * 3 2 1 7 7 C 1.38953 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99774 * 198.21403 * 7 2 1 9 9 N 1.37090 * 120.00069 * 18.21179 * 7 2 1 10 10 C 1.34775 * 120.00000 * 44.28725 * 9 7 2 11 11 O 1.21293 * 120.00281 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00023 * 180.02562 * 10 9 7 13 13 C 1.50697 * 109.47183 * 180.02562 * 12 10 9 14 14 C 1.38280 * 119.93778 * 270.02056 * 13 12 10 15 15 C 1.38149 * 120.07711 * 179.70533 * 14 13 12 16 16 C 1.38711 * 119.95437 * 0.54540 * 15 14 13 17 17 O 1.35925 * 120.05750 * 179.72699 * 16 15 14 18 18 C 1.38810 * 119.88287 * 359.45636 * 16 15 14 19 19 Cl 1.73598 * 120.04108 * 180.29945 * 18 16 15 20 20 C 1.38245 * 119.94157 * 89.99670 * 13 12 10 21 21 C 1.46503 * 119.99959 * 224.29262 * 9 7 2 22 22 C 1.52995 * 117.49847 * 3.21894 * 21 9 7 23 23 C 1.52994 * 60.00258 * 252.51713 * 22 21 9 24 24 H 0.97001 * 120.00035 * 354.94427 * 1 2 3 25 25 H 1.09000 * 109.47575 * 59.99631 * 12 10 9 26 26 H 1.09006 * 109.46780 * 299.99920 * 12 10 9 27 27 H 1.08004 * 119.96259 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.02601 * 180.30033 * 15 14 13 29 29 H 0.96706 * 113.99986 * 269.72288 * 17 16 15 30 30 H 1.07996 * 119.98340 * 0.05026 * 20 13 12 31 31 H 1.09001 * 115.55258 * 148.93412 * 21 9 7 32 32 H 1.09002 * 117.50308 * 0.02562 * 22 21 9 33 33 H 1.09000 * 117.50006 * 145.02606 * 22 21 9 34 34 H 1.09008 * 117.49891 * 252.51496 * 23 22 21 35 35 H 1.08996 * 117.52062 * 107.48567 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0483 -1.2266 0.2929 9 7 1.3750 -2.3610 -0.3700 10 6 0.5785 -2.3749 -1.4571 11 8 0.4221 -1.3631 -2.1074 12 6 -0.1189 -3.6474 -1.8641 13 6 -0.9408 -3.3960 -3.1019 14 6 -2.2558 -2.9846 -2.9853 15 6 -3.0101 -2.7474 -4.1181 16 6 -2.4510 -2.9331 -5.3739 17 8 -3.1929 -2.7058 -6.4899 18 6 -1.1308 -3.3462 -5.4890 19 17 -0.4245 -3.5724 -7.0586 20 6 -0.3786 -3.5766 -4.3519 21 6 1.5632 -3.5831 0.4158 22 6 2.4183 -3.4848 1.6807 23 6 2.9643 -4.1973 0.4418 24 1 -0.4850 0.8368 0.0740 25 1 -0.7707 -3.9791 -1.0559 26 1 0.6235 -4.4181 -2.0717 27 1 -2.6925 -2.8443 -2.0075 28 1 -4.0356 -2.4215 -4.0261 29 1 -3.6711 -3.4832 -6.8095 30 1 0.6485 -3.8984 -4.4404 31 1 0.7138 -4.2660 0.4339 32 1 2.8405 -2.5109 1.9285 33 1 2.1315 -4.1031 2.5314 34 1 3.0366 -5.2844 0.4772 35 1 3.7458 -3.6926 -0.1261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601016160.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:16 Heat of formation + Delta-G solvation = -19.235626 kcal Electronic energy + Delta-G solvation = -21288.713151 eV Core-core repulsion = 17893.309995 eV Total energy + Delta-G solvation = -3395.403156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.75354 -38.54186 -36.86635 -36.32532 -35.83889 -32.88023 -31.58980 -30.73164 -30.54876 -27.00250 -24.58419 -22.69924 -21.87394 -21.61330 -21.07837 -19.21905 -18.39083 -16.48368 -16.09637 -15.98520 -15.80186 -15.28989 -14.71412 -14.30304 -13.98561 -13.71220 -13.48373 -13.34549 -12.95687 -12.56017 -12.16625 -11.85176 -11.65018 -11.32186 -11.16059 -10.98223 -10.93516 -10.86883 -10.84141 -10.48170 -10.37754 -10.17633 -9.98722 -9.76534 -8.74344 -8.63823 -8.30974 -7.95173 -7.03767 -6.12140 -3.87425 1.31019 1.44200 2.28640 3.30672 3.37460 3.41886 3.72068 4.09834 4.19140 4.28151 4.74491 4.83430 4.98155 5.12585 5.28421 5.49381 5.51715 5.56363 5.64810 5.70192 5.75962 5.86365 6.03115 6.11704 6.15434 6.19976 6.30573 6.41045 6.45968 6.71138 6.83344 6.89957 6.92477 7.61469 7.64443 8.26482 9.05331 9.15050 9.65400 10.28060 10.96998 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.004790 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.306316 B = 5843.657679 C = 6473.585095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.349 4.349 8 H 0.077 0.923 9 N -0.429 5.429 10 C 0.485 3.515 11 O -0.523 6.523 12 C -0.102 4.102 13 C -0.034 4.034 14 C -0.081 4.081 15 C -0.131 4.131 16 C 0.099 3.901 17 O -0.488 6.488 18 C -0.059 4.059 19 Cl -0.072 7.072 20 C -0.086 4.086 21 C 0.074 3.926 22 C -0.173 4.173 23 C -0.208 4.208 24 H 0.264 0.736 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.384 0.616 30 H 0.133 0.867 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -11.472 -5.123 13.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.475 4.475 8 H 0.094 0.906 9 N -0.150 5.150 10 C 0.272 3.728 11 O -0.400 6.400 12 C -0.142 4.142 13 C -0.035 4.035 14 C -0.100 4.100 15 C -0.150 4.150 16 C 0.054 3.946 17 O -0.298 6.298 18 C -0.086 4.086 19 Cl -0.043 7.043 20 C -0.105 4.105 21 C -0.032 4.032 22 C -0.211 4.211 23 C -0.247 4.247 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.240 0.760 30 H 0.151 0.849 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.062 -10.234 -5.629 12.366 hybrid contribution 0.262 0.352 -0.014 0.439 sum -3.801 -9.882 -5.644 11.998 Atomic orbital electron populations 1.69806 1.06519 1.27383 1.42920 1.25217 0.94824 0.99320 0.94215 0.86236 0.79297 0.82272 0.78357 1.20329 1.21301 1.19907 1.18828 0.94464 0.83807 1.50424 0.90559 1.42752 1.44290 1.06809 1.21163 1.19577 0.83166 0.88429 0.81635 1.90575 1.62080 1.34325 1.52986 1.20767 0.98915 0.99521 0.95039 1.19452 0.93673 0.96653 0.93739 1.21020 0.93642 0.96662 0.98644 1.21258 1.00931 1.01884 0.90941 1.18087 0.89014 1.00986 0.86552 1.84882 1.64253 1.38556 1.42076 1.21247 0.94144 1.06418 0.86808 1.98337 1.83868 1.95650 1.26427 1.20795 0.99578 0.99984 0.90131 1.21711 0.92524 0.91621 0.97389 1.23052 1.04494 1.02487 0.91067 1.23317 0.99796 0.98467 1.03139 0.92626 0.89380 0.89480 0.85038 0.84868 0.76049 0.84918 0.88006 0.87501 0.89830 0.89803 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.32 11.74 55.50 0.65 -23.67 16 2 C 0.07 2.09 4.38 -17.47 -0.08 2.01 16 3 Si 0.91 22.00 29.59 -169.99 -5.03 16.97 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.35 -9.34 7.92 -14.94 -0.12 -9.46 16 8 H 0.08 2.00 7.26 -52.48 -0.38 1.62 16 9 N -0.43 -10.35 2.83 -107.73 -0.31 -10.66 16 10 C 0.49 11.78 6.96 -10.99 -0.08 11.70 16 11 O -0.52 -15.09 13.79 5.55 0.08 -15.01 16 12 C -0.10 -1.83 4.45 -29.04 -0.13 -1.96 16 13 C -0.03 -0.60 4.37 -104.61 -0.46 -1.06 16 14 C -0.08 -1.35 9.69 -39.60 -0.38 -1.73 16 15 C -0.13 -1.97 9.99 -39.44 -0.39 -2.37 16 16 C 0.10 1.51 6.70 -39.19 -0.26 1.24 16 17 O -0.49 -6.43 12.96 -19.50 -0.25 -6.68 16 18 C -0.06 -0.95 6.33 -39.36 -0.25 -1.20 16 19 Cl -0.07 -1.04 28.50 -51.86 -1.48 -2.51 16 20 C -0.09 -1.45 9.48 -39.57 -0.38 -1.82 16 21 C 0.07 1.40 5.87 -67.93 -0.40 1.00 16 22 C -0.17 -3.01 9.80 -26.74 -0.26 -3.27 16 23 C -0.21 -3.39 10.36 -26.73 -0.28 -3.67 16 24 H 0.26 7.44 8.32 -40.82 -0.34 7.10 16 25 H 0.09 1.42 7.51 -51.93 -0.39 1.03 16 26 H 0.09 1.34 8.05 -51.93 -0.42 0.92 16 27 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 28 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 29 H 0.38 3.05 9.06 45.56 0.41 3.46 16 30 H 0.13 2.09 8.06 -52.49 -0.42 1.67 16 31 H 0.10 1.68 6.96 -51.93 -0.36 1.32 16 32 H 0.11 2.08 6.72 -51.93 -0.35 1.74 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 35 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 319.53 15.07 4.82 4.82 Total: -1.00 -33.62 319.53 -8.14 -41.76 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.16 Total: 5.56 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -3.46 Total: -10.57 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.35 Total: -34.33 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.18 Total: -21.69 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.48 Total: -2.51 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.62 -8.14 -41.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601016160.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.524 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds