Wall clock time and date at job start Tue Mar 31 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 119.99721 * 2 1 4 4 H 1.48500 * 109.47278 * 269.99644 * 3 2 1 5 5 H 1.48499 * 109.47371 * 29.99733 * 3 2 1 6 6 H 1.48509 * 109.47211 * 149.99817 * 3 2 1 7 7 C 1.38953 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99774 * 198.21403 * 7 2 1 9 9 N 1.37090 * 120.00069 * 18.21179 * 7 2 1 10 10 C 1.34775 * 120.00000 * 44.28725 * 9 7 2 11 11 O 1.21293 * 120.00281 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00023 * 180.02562 * 10 9 7 13 13 C 1.50697 * 109.47183 * 180.02562 * 12 10 9 14 14 C 1.38280 * 119.93778 * 270.02056 * 13 12 10 15 15 C 1.38149 * 120.07711 * 179.70533 * 14 13 12 16 16 C 1.38711 * 119.95437 * 0.54540 * 15 14 13 17 17 O 1.35925 * 120.05750 * 179.72699 * 16 15 14 18 18 C 1.38810 * 119.88287 * 359.45636 * 16 15 14 19 19 Cl 1.73598 * 120.04108 * 180.29945 * 18 16 15 20 20 C 1.38245 * 119.94157 * 89.99670 * 13 12 10 21 21 C 1.46503 * 119.99959 * 224.29262 * 9 7 2 22 22 C 1.52995 * 117.49847 * 3.21894 * 21 9 7 23 23 C 1.52994 * 60.00258 * 252.51713 * 22 21 9 24 24 H 0.97001 * 120.00035 * 354.94427 * 1 2 3 25 25 H 1.09000 * 109.47575 * 59.99631 * 12 10 9 26 26 H 1.09006 * 109.46780 * 299.99920 * 12 10 9 27 27 H 1.08004 * 119.96259 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.02601 * 180.30033 * 15 14 13 29 29 H 0.96706 * 113.99986 * 269.72288 * 17 16 15 30 30 H 1.07996 * 119.98340 * 0.05026 * 20 13 12 31 31 H 1.09001 * 115.55258 * 148.93412 * 21 9 7 32 32 H 1.09002 * 117.50308 * 0.02562 * 22 21 9 33 33 H 1.09000 * 117.50006 * 145.02606 * 22 21 9 34 34 H 1.09008 * 117.49891 * 252.51496 * 23 22 21 35 35 H 1.08996 * 117.52062 * 107.48567 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5456 1.4403 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0483 -1.2266 0.2929 9 7 1.3750 -2.3610 -0.3700 10 6 0.5785 -2.3749 -1.4571 11 8 0.4221 -1.3631 -2.1074 12 6 -0.1189 -3.6474 -1.8641 13 6 -0.9408 -3.3960 -3.1019 14 6 -2.2558 -2.9846 -2.9853 15 6 -3.0101 -2.7474 -4.1181 16 6 -2.4510 -2.9331 -5.3739 17 8 -3.1929 -2.7058 -6.4899 18 6 -1.1308 -3.3462 -5.4890 19 17 -0.4245 -3.5724 -7.0586 20 6 -0.3786 -3.5766 -4.3519 21 6 1.5632 -3.5831 0.4158 22 6 2.4183 -3.4848 1.6807 23 6 2.9643 -4.1973 0.4418 24 1 -0.4850 0.8368 0.0740 25 1 -0.7707 -3.9791 -1.0559 26 1 0.6235 -4.4181 -2.0717 27 1 -2.6925 -2.8443 -2.0075 28 1 -4.0356 -2.4215 -4.0261 29 1 -3.6711 -3.4832 -6.8095 30 1 0.6485 -3.8984 -4.4404 31 1 0.7138 -4.2660 0.4339 32 1 2.8405 -2.5109 1.9285 33 1 2.1315 -4.1031 2.5314 34 1 3.0366 -5.2844 0.4772 35 1 3.7458 -3.6926 -0.1261 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601016160.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:16 Heat of formation + Delta-G solvation = -41.026066 kcal Electronic energy + Delta-G solvation = -21289.658055 eV Core-core repulsion = 17893.309995 eV Total energy + Delta-G solvation = -3396.348060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.03606 -40.14227 -38.12501 -37.53080 -37.33321 -34.77383 -33.14721 -32.39626 -31.78934 -28.51277 -26.38481 -23.91417 -23.29466 -22.93762 -22.58203 -20.95444 -19.49945 -18.27019 -17.77424 -17.22420 -17.11425 -16.66800 -16.39844 -15.86977 -15.59823 -15.09357 -14.87375 -14.71895 -14.51972 -13.89388 -13.64177 -13.41277 -13.08268 -12.95445 -12.79785 -12.64788 -12.38472 -12.29795 -12.16350 -12.04857 -12.00594 -11.61383 -11.50878 -11.16905 -10.71291 -9.99410 -9.82985 -9.41607 -8.92128 -8.18229 -5.94820 0.09173 0.22369 1.09419 1.34619 1.43417 1.47051 2.26479 2.44939 2.51108 3.11069 3.14904 3.23008 3.41196 3.74823 3.86626 4.17069 4.20031 4.28161 4.29009 4.34609 4.47391 4.54639 4.68292 4.79745 4.89744 4.94353 5.06642 5.12442 5.21048 5.33877 5.49848 5.53392 5.56889 5.72249 6.23353 6.75725 7.07505 7.25213 7.75417 8.42095 8.89996 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.004790 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.306316 B = 5843.657679 C = 6473.585095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.295 1.295 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.353 4.353 8 H 0.074 0.926 9 N -0.446 5.446 10 C 0.472 3.528 11 O -0.581 6.581 12 C -0.086 4.086 13 C -0.056 4.056 14 C -0.092 4.092 15 C -0.133 4.133 16 C 0.105 3.895 17 O -0.494 6.494 18 C -0.073 4.073 19 Cl -0.061 7.061 20 C -0.095 4.095 21 C 0.046 3.954 22 C -0.173 4.173 23 C -0.181 4.181 24 H 0.257 0.743 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.157 0.843 29 H 0.409 0.591 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.126 0.874 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.142 -13.340 -5.092 14.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.181 4.181 3 Si 0.787 3.213 4 H -0.223 1.223 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.481 4.481 8 H 0.092 0.908 9 N -0.167 5.167 10 C 0.261 3.739 11 O -0.462 6.462 12 C -0.126 4.126 13 C -0.057 4.057 14 C -0.111 4.111 15 C -0.151 4.151 16 C 0.060 3.940 17 O -0.306 6.306 18 C -0.100 4.100 19 Cl -0.033 7.033 20 C -0.114 4.114 21 C -0.059 4.059 22 C -0.211 4.211 23 C -0.220 4.220 24 H 0.067 0.933 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.151 0.849 28 H 0.175 0.825 29 H 0.268 0.732 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.144 0.856 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.107 -12.155 -5.569 13.987 hybrid contribution 0.307 0.854 -0.101 0.913 sum -3.800 -11.302 -5.669 13.203 Atomic orbital electron populations 1.69904 1.07698 1.27331 1.45313 1.25933 0.95490 1.02174 0.94506 0.85444 0.79243 0.79286 0.77292 1.22267 1.20669 1.17847 1.19019 0.94578 0.85292 1.49167 0.90840 1.43002 1.43994 1.07725 1.21982 1.20592 0.82635 0.89796 0.80891 1.90529 1.63976 1.36927 1.54734 1.20628 0.99398 0.96681 0.95891 1.19516 0.94201 0.98140 0.93816 1.21180 0.93714 0.96766 0.99396 1.21507 1.01932 1.01274 0.90421 1.18167 0.88964 0.99702 0.87201 1.84818 1.64243 1.40289 1.41290 1.21394 0.94644 1.06766 0.87175 1.98333 1.83797 1.95603 1.25521 1.20898 0.99881 1.00240 0.90338 1.22065 0.95086 0.90493 0.98279 1.23097 1.03852 1.02013 0.92134 1.23323 0.96923 1.00499 1.01222 0.93340 0.87416 0.86766 0.84851 0.82511 0.73170 0.84558 0.85072 0.90403 0.86491 0.85609 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -52.10 11.74 21.66 0.25 -51.85 16 2 C 0.03 1.44 4.38 84.93 0.37 1.82 16 3 Si 0.96 46.18 29.59 68.60 2.03 48.21 16 4 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.35 -19.21 7.92 84.04 0.67 -18.54 16 8 H 0.07 3.92 7.26 -2.91 -0.02 3.89 16 9 N -0.45 -21.51 2.83 -613.13 -1.74 -23.24 16 10 C 0.47 23.02 6.96 87.66 0.61 23.63 16 11 O -0.58 -34.42 13.79 -3.07 -0.04 -34.46 16 12 C -0.09 -2.99 4.45 29.10 0.13 -2.86 16 13 C -0.06 -1.93 4.37 -19.85 -0.09 -2.02 16 14 C -0.09 -3.00 9.69 22.26 0.22 -2.78 16 15 C -0.13 -3.81 9.99 22.36 0.22 -3.59 16 16 C 0.11 3.05 6.70 22.52 0.15 3.20 16 17 O -0.49 -11.92 12.96 -92.70 -1.20 -13.12 16 18 C -0.07 -2.25 6.33 22.41 0.14 -2.11 16 19 Cl -0.06 -1.70 28.50 -2.72 -0.08 -1.78 16 20 C -0.09 -3.13 9.48 22.28 0.21 -2.92 16 21 C 0.05 1.64 5.87 44.99 0.26 1.90 16 22 C -0.17 -5.64 9.80 30.59 0.30 -5.34 16 23 C -0.18 -5.36 10.36 30.59 0.32 -5.04 16 24 H 0.26 15.05 8.32 -92.71 -0.77 14.27 16 25 H 0.11 3.26 7.51 -2.39 -0.02 3.24 16 26 H 0.11 3.26 8.05 -2.38 -0.02 3.24 16 27 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.16 3.63 8.06 -2.91 -0.02 3.60 16 29 H 0.41 5.41 9.06 -74.05 -0.67 4.74 16 30 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.13 3.89 6.96 -2.39 -0.02 3.88 16 32 H 0.08 3.00 6.72 -2.39 -0.02 2.99 16 33 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.13 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -74.96 319.53 3.20 -71.77 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 0.46 Total: 19.14 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 3.51 Total: -14.65 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -1.48 Total: -75.09 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -1.24 Total: -47.59 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Atomic # 17 Polarization: -1.70 SS G_CDS: -0.08 Total: -1.78 kcal Total: -74.96 3.20 -71.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601016160.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.739 kcal (2) G-P(sol) polarization free energy of solvation -74.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds