Wall clock time and date at job start Tue Mar 31 2020 07:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99623 * 2 1 4 4 H 1.48502 * 109.46967 * 269.99949 * 3 2 1 5 5 H 1.48499 * 109.47109 * 30.00223 * 3 2 1 6 6 H 1.48505 * 109.46816 * 150.00156 * 3 2 1 7 7 C 1.37871 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00167 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00548 * 89.99339 * 10 9 7 12 12 O 1.21293 * 120.00308 * 186.22047 * 11 10 9 13 13 C 1.50696 * 120.00074 * 6.22778 * 11 10 9 14 14 C 1.55882 * 110.82462 * 205.52535 * 13 11 10 15 15 S 1.83096 * 82.43971 * 217.25387 * 14 13 11 16 16 C 1.55887 * 110.82848 * 91.86619 * 13 11 10 17 17 C 1.40034 * 119.99558 * 270.00058 * 10 9 7 18 18 C 1.38857 * 120.04331 * 187.64754 * 17 10 9 19 19 C 1.38109 * 119.95069 * 179.76545 * 18 17 10 20 20 C 1.38478 * 120.05002 * 0.50836 * 19 18 17 21 21 F 1.35100 * 119.95764 * 179.72309 * 20 19 18 22 22 C 1.38472 * 120.08434 * 359.74389 * 20 19 18 23 23 C 1.38116 * 120.04914 * 0.02562 * 22 20 19 24 24 H 0.96993 * 120.00664 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47305 * 59.99876 * 9 7 2 26 26 H 1.09004 * 109.46942 * 300.00074 * 9 7 2 27 27 H 1.09007 * 110.43149 * 328.72102 * 13 11 10 28 28 H 1.09000 * 114.38416 * 103.86464 * 14 13 11 29 29 H 1.08998 * 114.41265 * 330.64363 * 14 13 11 30 30 H 1.09004 * 114.37409 * 29.35448 * 16 13 11 31 31 H 1.09001 * 114.38172 * 256.13555 * 16 13 11 32 32 H 1.08000 * 120.02327 * 0.02562 * 18 17 10 33 33 H 1.08006 * 119.97866 * 180.22946 * 19 18 17 34 34 H 1.07999 * 119.97542 * 179.97438 * 22 20 19 35 35 H 1.08000 * 120.02072 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6413 -4.1247 1.1666 12 8 3.5126 -4.9686 1.1696 13 6 2.0486 -3.6491 2.4679 14 6 3.0588 -3.8403 3.6396 15 16 1.5352 -4.2609 4.5639 16 6 0.8478 -4.5484 2.8915 17 6 2.6582 -4.1447 -1.2133 18 6 3.4330 -5.2970 -1.2198 19 6 3.8766 -5.8228 -2.4174 20 6 3.5582 -5.1959 -3.6103 21 9 3.9978 -5.7088 -4.7803 22 6 2.7900 -4.0438 -3.6056 23 6 2.3404 -3.5173 -2.4105 24 1 -0.4851 0.8399 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6249 -2.5571 0.8897 27 1 1.7413 -2.6064 2.3875 28 1 3.5455 -2.9222 3.9685 29 1 3.7493 -4.6733 3.5077 30 1 0.9159 -5.5808 2.5484 31 1 -0.1314 -4.0997 2.7242 32 1 3.6850 -5.7840 -0.2894 33 1 4.4762 -6.7211 -2.4232 34 1 2.5430 -3.5561 -4.5370 35 1 1.7416 -2.6184 -2.4073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601129543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:17 Heat of formation + Delta-G solvation = -18.765536 kcal Electronic energy + Delta-G solvation = -21464.912381 eV Core-core repulsion = 18083.946105 eV Total energy + Delta-G solvation = -3380.966275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.50595 -40.51453 -38.06371 -35.41594 -34.73527 -32.82824 -30.73035 -29.27056 -27.45381 -26.89935 -24.12386 -23.53709 -22.34741 -21.20349 -18.83997 -17.49220 -17.29046 -16.98178 -16.56244 -16.13215 -15.55727 -15.22992 -14.91100 -14.69453 -14.22884 -13.91043 -13.50823 -13.20832 -13.02795 -12.91280 -12.67713 -12.46842 -12.34658 -11.98805 -11.89514 -11.58439 -11.31669 -11.18249 -10.89019 -10.78303 -10.39504 -10.22657 -9.77407 -9.27062 -8.92618 -8.75013 -8.70460 -7.64753 -7.32972 -6.39279 -4.49489 1.46408 1.65229 1.71931 2.09373 2.88881 3.12409 3.20790 3.23066 3.37644 4.09677 4.18299 4.49108 4.61363 4.69536 4.75800 4.95004 5.15765 5.20899 5.34146 5.42884 5.55934 5.69464 5.71800 5.73867 5.91928 6.09783 6.27319 6.50030 6.59732 6.65267 6.68841 6.88260 7.06077 7.49010 7.55496 7.74171 7.86449 8.42743 8.60992 9.20341 10.66820 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.006988 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.923294 B = 4005.996854 C = 6256.713002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.226 3.774 10 N -0.530 5.530 11 C 0.526 3.474 12 O -0.538 6.538 13 C -0.138 4.138 14 C -0.043 4.043 15 S -0.312 6.312 16 C -0.047 4.047 17 C 0.161 3.839 18 C -0.147 4.147 19 C -0.137 4.137 20 C 0.053 3.947 21 F -0.152 7.152 22 C -0.134 4.134 23 C -0.116 4.116 24 H 0.269 0.731 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.146 0.854 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.180 0.820 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -7.152 0.589 7.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.107 3.893 10 N -0.248 5.248 11 C 0.315 3.685 12 O -0.419 6.419 13 C -0.160 4.160 14 C -0.191 4.191 15 S -0.086 6.086 16 C -0.196 4.196 17 C 0.064 3.936 18 C -0.166 4.166 19 C -0.157 4.157 20 C 0.033 3.967 21 F -0.131 7.131 22 C -0.153 4.153 23 C -0.136 4.136 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.196 0.804 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 1.943 -7.478 1.954 7.969 hybrid contribution 0.749 1.180 -1.528 2.071 sum 2.693 -6.298 0.425 6.862 Atomic orbital electron populations 1.69893 1.06001 1.27846 1.48507 1.24904 0.94868 0.99391 0.94174 0.86472 0.79889 0.82564 0.78540 1.20297 1.20853 1.19626 1.21366 0.93736 0.89886 1.53630 0.91760 1.19790 0.87455 0.82181 0.99855 1.46104 1.42768 1.33069 1.02891 1.20603 0.81590 0.80969 0.85353 1.90328 1.31306 1.33619 1.86621 1.23877 0.94073 1.05338 0.92723 1.24738 0.95682 1.06054 0.92637 1.88334 1.14580 1.90457 1.15233 1.24646 1.00647 1.02627 0.91694 1.18098 0.96225 0.93118 0.86120 1.22344 0.98375 0.95608 1.00306 1.21025 1.02558 1.01094 0.91001 1.17715 1.01659 0.96244 0.81132 1.91428 1.88278 1.86787 1.46581 1.20882 0.99668 0.95680 0.99095 1.21021 1.01866 1.00850 0.89861 0.92130 0.93410 0.93272 0.83651 0.86822 0.86361 0.87491 0.86212 0.80359 0.85346 0.85047 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.32 13.29 55.43 0.74 -21.59 16 2 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -12.89 9.04 -34.44 -0.31 -13.20 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.23 4.73 4.13 -5.20 -0.02 4.71 16 10 N -0.53 -10.14 2.68 -114.72 -0.31 -10.45 16 11 C 0.53 9.44 6.79 -10.99 -0.07 9.36 16 12 O -0.54 -10.08 12.41 5.55 0.07 -10.01 16 13 C -0.14 -2.16 2.27 -88.69 -0.20 -2.36 16 14 C -0.04 -0.60 8.37 38.70 0.32 -0.28 16 15 S -0.31 -4.54 24.06 -107.50 -2.59 -7.12 16 16 C -0.05 -0.65 8.44 38.70 0.33 -0.33 16 17 C 0.16 3.01 6.49 -83.66 -0.54 2.47 16 18 C -0.15 -2.56 8.97 -39.40 -0.35 -2.92 16 19 C -0.14 -2.17 10.02 -39.54 -0.40 -2.57 16 20 C 0.05 0.85 7.30 -39.41 -0.29 0.56 16 21 F -0.15 -2.40 17.27 2.25 0.04 -2.36 16 22 C -0.13 -2.15 10.02 -39.54 -0.40 -2.55 16 23 C -0.12 -2.07 9.14 -39.40 -0.36 -2.43 16 24 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 25 H 0.05 1.05 6.57 -51.93 -0.34 0.71 16 26 H 0.05 1.03 6.23 -51.93 -0.32 0.70 16 27 H 0.15 2.53 6.34 -51.93 -0.33 2.20 16 28 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.12 1.65 7.32 -51.93 -0.38 1.27 16 30 H 0.11 1.38 8.10 -51.93 -0.42 0.96 16 31 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.18 3.20 4.73 -55.12 -0.26 2.94 16 33 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 34 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 35 H 0.15 2.82 6.27 -52.49 -0.33 2.49 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -25.30 311.06 -8.40 -33.70 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.62 Total: 6.74 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -2.39 Total: -7.91 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.43 Total: -32.03 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.07 Total: -10.01 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Atomic # 16 Polarization: -4.54 SS G_CDS: -2.59 Total: -7.12 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.30 -8.40 -33.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601129543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.934 kcal (2) G-P(sol) polarization free energy of solvation -25.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds