Wall clock time and date at job start Tue Mar 31 2020 07:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86809 * 119.99623 * 2 1 4 4 H 1.48502 * 109.46967 * 269.99949 * 3 2 1 5 5 H 1.48499 * 109.47109 * 30.00223 * 3 2 1 6 6 H 1.48505 * 109.46816 * 150.00156 * 3 2 1 7 7 C 1.37871 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00366 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00167 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00548 * 89.99339 * 10 9 7 12 12 O 1.21293 * 120.00308 * 186.22047 * 11 10 9 13 13 C 1.50696 * 120.00074 * 6.22778 * 11 10 9 14 14 C 1.55882 * 110.82462 * 205.52535 * 13 11 10 15 15 S 1.83096 * 82.43971 * 217.25387 * 14 13 11 16 16 C 1.55887 * 110.82848 * 91.86619 * 13 11 10 17 17 C 1.40034 * 119.99558 * 270.00058 * 10 9 7 18 18 C 1.38857 * 120.04331 * 187.64754 * 17 10 9 19 19 C 1.38109 * 119.95069 * 179.76545 * 18 17 10 20 20 C 1.38478 * 120.05002 * 0.50836 * 19 18 17 21 21 F 1.35100 * 119.95764 * 179.72309 * 20 19 18 22 22 C 1.38472 * 120.08434 * 359.74389 * 20 19 18 23 23 C 1.38116 * 120.04914 * 0.02562 * 22 20 19 24 24 H 0.96993 * 120.00664 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47305 * 59.99876 * 9 7 2 26 26 H 1.09004 * 109.46942 * 300.00074 * 9 7 2 27 27 H 1.09007 * 110.43149 * 328.72102 * 13 11 10 28 28 H 1.09000 * 114.38416 * 103.86464 * 14 13 11 29 29 H 1.08998 * 114.41265 * 330.64363 * 14 13 11 30 30 H 1.09004 * 114.37409 * 29.35448 * 16 13 11 31 31 H 1.09001 * 114.38172 * 256.13555 * 16 13 11 32 32 H 1.08000 * 120.02327 * 0.02562 * 18 17 10 33 33 H 1.08006 * 119.97866 * 180.22946 * 19 18 17 34 34 H 1.07999 * 119.97542 * 179.97438 * 22 20 19 35 35 H 1.08000 * 120.02072 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6413 -4.1247 1.1666 12 8 3.5126 -4.9686 1.1696 13 6 2.0486 -3.6491 2.4679 14 6 3.0588 -3.8403 3.6396 15 16 1.5352 -4.2609 4.5639 16 6 0.8478 -4.5484 2.8915 17 6 2.6582 -4.1447 -1.2133 18 6 3.4330 -5.2970 -1.2198 19 6 3.8766 -5.8228 -2.4174 20 6 3.5582 -5.1959 -3.6103 21 9 3.9978 -5.7088 -4.7803 22 6 2.7900 -4.0438 -3.6056 23 6 2.3404 -3.5173 -2.4105 24 1 -0.4851 0.8399 0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6249 -2.5571 0.8897 27 1 1.7413 -2.6064 2.3875 28 1 3.5455 -2.9222 3.9685 29 1 3.7493 -4.6733 3.5077 30 1 0.9159 -5.5808 2.5484 31 1 -0.1314 -4.0997 2.7242 32 1 3.6850 -5.7840 -0.2894 33 1 4.4762 -6.7211 -2.4232 34 1 2.5430 -3.5561 -4.5370 35 1 1.7416 -2.6184 -2.4073 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601129543.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:16 Heat of formation + Delta-G solvation = -29.330435 kcal Electronic energy + Delta-G solvation = -21465.370509 eV Core-core repulsion = 18083.946105 eV Total energy + Delta-G solvation = -3381.424404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.078 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.78268 -41.93570 -39.41192 -36.94644 -35.98116 -34.62469 -32.07075 -30.70475 -29.11574 -28.03593 -25.57337 -25.10041 -23.74851 -22.54534 -20.20018 -18.88267 -18.72946 -18.62815 -17.99338 -17.38235 -16.88973 -16.51730 -16.47456 -16.23834 -15.56333 -15.32061 -14.82265 -14.54593 -14.38781 -14.17282 -14.08835 -13.89367 -13.72096 -13.43758 -13.34544 -12.91416 -12.81176 -12.71426 -12.49529 -12.23622 -12.03435 -11.90459 -11.05016 -10.82736 -10.64993 -10.22359 -10.03047 -8.80949 -8.77968 -8.23678 -6.39680 0.10899 0.32262 0.57391 0.93379 1.40451 1.44079 1.49754 1.54918 1.94755 2.38852 2.75423 3.06902 3.28367 3.35225 3.39505 3.42613 3.89336 3.97305 4.10079 4.31530 4.33581 4.38672 4.46050 4.51758 4.59027 4.85004 4.89243 5.04832 5.09558 5.26332 5.29199 5.33680 5.61585 5.68230 5.93847 6.11217 6.34853 6.70930 7.02518 7.32583 8.79941 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.006988 C = 0.004474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.923294 B = 4005.996854 C = 6256.713002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.034 3.966 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.241 3.759 10 N -0.536 5.536 11 C 0.525 3.475 12 O -0.546 6.546 13 C -0.137 4.137 14 C -0.034 4.034 15 S -0.323 6.323 16 C -0.038 4.038 17 C 0.138 3.862 18 C -0.152 4.152 19 C -0.129 4.129 20 C 0.052 3.948 21 F -0.147 7.147 22 C -0.127 4.127 23 C -0.128 4.128 24 H 0.270 0.730 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.815 -7.683 0.341 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.168 4.168 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.586 4.586 8 H 0.069 0.931 9 C 0.122 3.878 10 N -0.254 5.254 11 C 0.314 3.686 12 O -0.427 6.427 13 C -0.160 4.160 14 C -0.183 4.183 15 S -0.097 6.097 16 C -0.186 4.186 17 C 0.042 3.958 18 C -0.171 4.171 19 C -0.148 4.148 20 C 0.032 3.968 21 F -0.126 7.126 22 C -0.147 4.147 23 C -0.148 4.148 24 H 0.079 0.921 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.146 0.854 32 H 0.193 0.807 33 H 0.173 0.827 34 H 0.171 0.829 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.634 -8.020 1.706 8.613 hybrid contribution 0.576 1.284 -1.518 2.070 sum 3.211 -6.737 0.188 7.465 Atomic orbital electron populations 1.69958 1.06897 1.28399 1.49590 1.25461 0.95436 1.01736 0.94138 0.85701 0.78811 0.79795 0.78314 1.20290 1.20561 1.19694 1.21477 0.93125 0.91143 1.52885 0.93134 1.19443 0.87341 0.81943 0.99093 1.46048 1.42832 1.32864 1.03668 1.20965 0.81358 0.80694 0.85599 1.90320 1.31610 1.33993 1.86789 1.23954 0.95285 1.04595 0.92120 1.24775 0.95365 1.06744 0.91380 1.88378 1.15003 1.90556 1.15716 1.24710 1.00242 1.02891 0.90777 1.18380 0.97205 0.93997 0.86176 1.22318 0.98578 0.95337 1.00895 1.21272 1.01784 1.01545 0.90173 1.17764 1.01440 0.96151 0.81414 1.91446 1.88167 1.86672 1.46292 1.21072 0.98765 0.95552 0.99279 1.20944 1.02587 1.00785 0.90515 0.92083 0.94706 0.93218 0.85438 0.85668 0.86035 0.86376 0.85397 0.80701 0.82668 0.82880 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.04 13.29 21.44 0.28 -45.75 16 2 C 0.03 1.66 5.46 84.65 0.46 2.12 16 3 Si 0.95 39.44 29.54 68.60 2.03 41.47 16 4 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.55 -25.99 9.04 25.60 0.23 -25.76 16 8 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 9 C 0.24 10.24 4.13 85.63 0.35 10.59 16 10 N -0.54 -20.55 2.68 -635.25 -1.71 -22.26 16 11 C 0.52 18.61 6.79 87.66 0.60 19.20 16 12 O -0.55 -20.03 12.41 -3.07 -0.04 -20.07 16 13 C -0.14 -4.22 2.27 -9.54 -0.02 -4.24 16 14 C -0.03 -0.93 8.37 72.98 0.61 -0.32 16 15 S -0.32 -9.00 24.06 -56.49 -1.36 -10.36 16 16 C -0.04 -1.00 8.44 72.98 0.62 -0.39 16 17 C 0.14 5.14 6.49 38.12 0.25 5.39 16 18 C -0.15 -5.13 8.97 22.39 0.20 -4.93 16 19 C -0.13 -3.79 10.02 22.30 0.22 -3.57 16 20 C 0.05 1.58 7.30 22.38 0.16 1.74 16 21 F -0.15 -4.26 17.27 44.97 0.78 -3.49 16 22 C -0.13 -3.92 10.02 22.30 0.22 -3.70 16 23 C -0.13 -4.56 9.14 22.39 0.20 -4.35 16 24 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 25 H 0.03 1.57 6.57 -2.39 -0.02 1.56 16 26 H 0.05 2.10 6.23 -2.39 -0.01 2.09 16 27 H 0.13 4.44 6.34 -2.38 -0.02 4.42 16 28 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.12 3.24 7.32 -2.39 -0.02 3.22 16 30 H 0.12 2.87 8.10 -2.38 -0.02 2.85 16 31 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.18 6.10 4.73 -44.56 -0.21 5.89 16 33 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 34 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.13 5.18 6.27 -2.91 -0.02 5.16 16 Total: -1.00 -52.01 311.06 5.02 -46.99 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.93 Total: 21.67 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 4.11 Total: -8.21 kcal Atomic # 7 Polarization: -66.59 SS G_CDS: -1.42 Total: -68.01 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.04 Total: -20.07 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.36 Total: -10.36 kcal Total: -52.01 5.02 -46.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601129543.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.656 kcal (2) G-P(sol) polarization free energy of solvation -52.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds