Wall clock time and date at job start Tue Mar 31 2020 06:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00180 * 2 1 4 4 H 1.48498 * 109.47321 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47409 * 300.00329 * 3 2 1 6 6 H 1.48504 * 109.46860 * 60.00043 * 3 2 1 7 7 C 1.38808 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00194 * 200.49739 * 7 2 1 9 9 N 1.36941 * 120.00417 * 20.49480 * 7 2 1 10 10 C 1.46507 * 119.99475 * 38.10178 * 9 7 2 11 11 C 1.50704 * 109.46825 * 90.00216 * 10 9 7 12 12 C 1.38267 * 119.92647 * 269.72532 * 11 10 9 13 13 C 1.38539 * 120.04928 * 179.70596 * 12 11 10 14 14 C 1.39256 * 119.83677 * 0.56899 * 13 12 11 15 15 C 1.38601 * 119.82304 * 359.72811 * 14 13 12 16 16 Cl 1.73605 * 119.99274 * 180.02562 * 15 14 13 17 17 C 1.38215 * 119.91989 * 89.99778 * 11 10 9 18 18 O 1.36527 * 108.63692 * 179.72371 * 14 13 12 19 19 C 1.43986 * 105.48041 * 342.72305 * 18 14 13 20 20 O 1.36503 * 131.52155 * 180.22665 * 13 12 11 21 21 C 1.46492 * 120.00398 * 218.37965 * 9 7 2 22 22 C 1.53001 * 117.49732 * 13.75208 * 21 9 7 23 23 C 1.53003 * 117.50120 * 305.09415 * 21 9 7 24 24 H 0.97003 * 119.99441 * 354.96411 * 1 2 3 25 25 H 1.08994 * 109.46921 * 210.00195 * 10 9 7 26 26 H 1.08996 * 109.47439 * 330.00403 * 10 9 7 27 27 H 1.08007 * 119.97086 * 359.97438 * 12 11 10 28 28 H 1.07994 * 119.93693 * 359.97438 * 17 11 10 29 29 H 1.09010 * 110.57252 * 268.55742 * 19 18 14 30 30 H 1.09000 * 110.70133 * 145.74800 * 19 18 14 31 31 H 1.09001 * 115.54992 * 159.41613 * 21 9 7 32 32 H 1.09001 * 117.50029 * 359.97438 * 22 21 9 33 33 H 1.09005 * 117.49982 * 145.01799 * 22 21 9 34 34 H 1.08992 * 117.49736 * 214.97951 * 23 21 9 35 35 H 1.08997 * 117.49366 * 359.96974 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0390 -1.2320 0.3270 9 7 1.3906 -2.3504 -0.4163 10 6 0.4592 -2.3121 -1.5465 11 6 1.2142 -2.5551 -2.8280 12 6 1.7413 -1.4876 -3.5311 13 6 2.4411 -1.7085 -4.7062 14 6 2.6018 -3.0069 -5.1832 15 6 2.0657 -4.0721 -4.4767 16 17 2.2640 -5.6926 -5.0670 17 6 1.3733 -3.8441 -3.3005 18 8 3.3145 -2.9592 -6.3467 19 6 3.2362 -1.5914 -6.7895 20 8 3.0530 -0.8473 -5.5705 21 6 1.6543 -3.6159 0.2730 22 6 2.3626 -3.5483 1.6275 23 6 3.1124 -4.0628 0.3961 24 1 -0.4849 0.8369 0.0737 25 1 -0.2986 -3.0850 -1.4191 26 1 -0.0218 -1.3349 -1.5880 27 1 1.6111 -0.4810 -3.1616 28 1 0.9568 -4.6750 -2.7506 29 1 2.3839 -1.4524 -7.4548 30 1 4.1601 -1.2933 -7.2851 31 1 0.9000 -4.3910 0.1376 32 1 2.6328 -2.5623 2.0055 33 1 2.0746 -4.2793 2.3831 34 1 3.3173 -5.1319 0.3421 35 1 3.8753 -3.4155 -0.0362 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609203471.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:15 Heat of formation + Delta-G solvation = 8.961358 kcal Electronic energy + Delta-G solvation = -21690.011531 eV Core-core repulsion = 18295.831088 eV Total energy + Delta-G solvation = -3394.180443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 295.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.91886 -38.18241 -36.89045 -36.28676 -35.85724 -33.58879 -31.35858 -29.97272 -29.37346 -26.24634 -25.17777 -23.77102 -22.62151 -21.43140 -21.36870 -19.92174 -17.76641 -17.47155 -17.21174 -16.38160 -15.98928 -15.47402 -14.56265 -14.47686 -14.31273 -13.89102 -13.84351 -13.38313 -13.26246 -12.89379 -12.70257 -12.14064 -11.84283 -11.61443 -11.29502 -11.16139 -10.90187 -10.81620 -10.70466 -10.62837 -10.31024 -10.29160 -10.07257 -9.70593 -9.33331 -8.58267 -8.28005 -7.75267 -6.62535 -5.98515 -3.53340 1.42126 1.44938 2.28894 2.92971 3.25423 3.35927 3.39548 3.59230 3.83942 4.33609 4.74103 4.86592 4.90849 4.92891 5.19147 5.24560 5.34871 5.45051 5.60994 5.74645 5.86318 6.00279 6.07929 6.17986 6.28521 6.41868 6.47544 6.56876 6.59759 6.73942 6.94584 7.03123 7.14676 7.33820 7.41671 7.71240 8.36552 8.99618 9.60907 10.17792 11.02769 Molecular weight = 295.08amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.006424 C = 0.004918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.683040 B = 4357.546774 C = 5691.584513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.019 3.981 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.287 1.287 7 C -0.259 4.259 8 H 0.064 0.936 9 N -0.540 5.540 10 C 0.179 3.821 11 C -0.046 4.046 12 C -0.074 4.074 13 C 0.040 3.960 14 C 0.012 3.988 15 C -0.015 4.015 16 Cl -0.073 7.073 17 C -0.102 4.102 18 O -0.306 6.306 19 C 0.213 3.787 20 O -0.308 6.308 21 C 0.126 3.874 22 C -0.193 4.193 23 C -0.225 4.225 24 H 0.259 0.741 25 H 0.047 0.953 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.079 0.921 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.806 -5.824 -9.538 11.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.182 4.182 3 Si 0.723 3.277 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.213 1.213 7 C -0.388 4.388 8 H 0.081 0.919 9 N -0.254 5.254 10 C 0.053 3.947 11 C -0.050 4.050 12 C -0.093 4.093 13 C -0.005 4.005 14 C -0.033 4.033 15 C -0.043 4.043 16 Cl -0.044 7.044 17 C -0.121 4.121 18 O -0.222 6.222 19 C 0.101 3.899 20 O -0.224 6.224 21 C 0.017 3.983 22 C -0.232 4.232 23 C -0.266 4.266 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.129 0.871 27 H 0.157 0.843 28 H 0.157 0.843 29 H 0.097 0.903 30 H 0.144 0.856 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.853 -5.718 -9.727 11.434 hybrid contribution 0.832 0.805 -0.284 1.192 sum 2.686 -4.913 -10.011 11.471 Atomic orbital electron populations 1.69882 1.05539 1.26375 1.50666 1.25214 0.95091 0.98720 0.99186 0.86358 0.80033 0.83679 0.77669 1.19867 1.21029 1.21332 1.18988 0.94354 0.84678 1.40816 0.91861 1.43320 1.50791 1.02847 1.28479 1.20093 0.89895 1.04142 0.80565 1.21100 0.97339 0.90167 0.96430 1.20238 0.96244 1.01603 0.91262 1.19723 0.98945 0.86325 0.95482 1.19175 0.99961 0.93649 0.90499 1.19776 1.03883 0.83440 0.97171 1.98338 1.96535 1.21179 1.88348 1.20782 0.99781 0.98225 0.93334 1.87350 1.68873 1.29310 1.36669 1.25526 1.03319 0.73846 0.87256 1.87374 1.75352 1.36479 1.23215 1.21143 0.91624 0.90382 0.95141 1.23085 1.06547 1.02124 0.91451 1.23359 0.99781 0.99059 1.04392 0.93039 0.93503 0.87110 0.84260 0.84264 0.90315 0.85579 0.89248 0.88277 0.90730 0.90855 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.21 11.45 55.49 0.64 -22.57 16 2 C 0.02 0.48 4.97 -17.43 -0.09 0.40 16 3 Si 0.89 20.43 29.60 -169.99 -5.03 15.40 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.26 -6.50 8.03 -15.06 -0.12 -6.62 16 8 H 0.06 1.65 7.25 -52.49 -0.38 1.27 16 9 N -0.54 -12.25 2.76 -167.02 -0.46 -12.71 16 10 C 0.18 3.74 5.46 -5.19 -0.03 3.72 16 11 C -0.05 -0.88 5.46 -104.62 -0.57 -1.45 16 12 C -0.07 -1.43 9.71 -39.46 -0.38 -1.81 16 13 C 0.04 0.72 7.15 -39.09 -0.28 0.44 16 14 C 0.01 0.22 6.94 -39.07 -0.27 -0.06 16 15 C -0.02 -0.26 6.33 -39.40 -0.25 -0.51 16 16 Cl -0.07 -1.08 28.96 -51.86 -1.50 -2.59 16 17 C -0.10 -1.72 9.47 -39.54 -0.37 -2.10 16 18 O -0.31 -4.83 11.40 -45.78 -0.52 -5.36 16 19 C 0.21 2.66 8.89 101.05 0.90 3.56 16 20 O -0.31 -5.13 11.40 -45.70 -0.52 -5.65 16 21 C 0.13 2.53 6.61 -67.93 -0.45 2.08 16 22 C -0.19 -3.71 9.81 -26.69 -0.26 -3.98 16 23 C -0.23 -4.21 10.10 -26.69 -0.27 -4.48 16 24 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 25 H 0.05 0.90 7.98 -51.93 -0.41 0.48 16 26 H 0.11 2.61 5.46 -51.93 -0.28 2.32 16 27 H 0.14 2.84 8.06 -52.48 -0.42 2.42 16 28 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 29 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 30 H 0.13 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 32 H 0.10 2.12 6.95 -51.93 -0.36 1.75 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.08 1.73 8.02 -51.93 -0.42 1.31 16 LS Contribution 316.59 15.07 4.77 4.77 Total: -1.00 -27.27 316.59 -9.03 -36.29 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.95 Total: 3.22 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -2.45 Total: -10.82 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.17 Total: -35.29 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -1.04 Total: -11.00 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.50 Total: -2.59 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.27 -9.03 -36.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609203471.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.256 kcal (2) G-P(sol) polarization free energy of solvation -27.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds